Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000296

Physical Location & Seq

Genomic Coordinates Reverse (-)

68633658 .. 68634951

Gene Structure 1294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGTTGCACTAATTTATTTCCCGTCATTGGATCAATTATTGCAGACTCTTTCTTGGGCTGTTTCCTTGTCATCTTCATCTCTTTCTGGTATCCCTTTGCTGGGAATGGTCTTATTCACTTTGACTGCAACTGTTGACTCATTGAGGCCTCCAGCATGTGAGAATGGATCAATCTCATGCAGACCACCATCAAGAATTCAGTTTGCAGTCCTCTATGCCAGTATAGATCTAGCATCAAGTGGGGTGGGAGGCGATCGCTTTACTATAGCAACAATAGGAGCAAATCAATTTGATAAACTGAAATATCAAGGGATTTTCTTTAACTGGTTTTTCTTCACACTATATACAGCTTCTGTCATAAGTGCTACTGCCATTGTCTATATTGAGGACAATGTCAGTTGGGGATTAGGATTTGGCCTATGTGCTGTTGCTAATTTGATTGGTTTAATCATTTTCTTTATAGGGAGCCATTTATACCATCACGATAAGCCACAGTGTAGCCCATTCGATCATGAGTTTAGCTCGTGTTATGGTCGCAGTATCCAGAAAAGGAAGGTCCTACTCTCATCCGGGATAGATGATGACCACTACAGGAATGATGGAAAGGCAGAGATGGTGCCTGCAACACCTAAAAAGAGTTTCGGGTGCAAATTTGACTTACCTCCCATGTCCATATACTTGCCTGTTTATAACCTTCATCTTCCTTGTATATTAAGAAACCTGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009268 GO:0009605 GO:0009607 GO:0009624 GO:0009628 GO:0009651 GO:0009987 GO:0010447 GO:0010542 GO:0015075 GO:0015103 GO:0015108 GO:0015112 GO:0015291 GO:0015318 GO:0015513 GO:0015562 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022857 GO:0033554 GO:0034220 GO:0042221 GO:0043207 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0051716 GO:0055085 GO:0070887 GO:0071214 GO:0071470 GO:0071472 GO:0071705 GO:0071944 GO:0098656 GO:0098660 GO:0098661 GO:0104004 GO:1902074 GO:1902075 GO:1902476

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

242

Amino Acids

26.68

Weight (kDa)

6.57

Isoelectric Point (pI)

42.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	28 - 202	6.4e-27	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca	FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica	MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica	Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis	pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis	RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata	RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora	Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii	Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa	Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha	Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana	Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	690
AccB1I	GGYRCC	1 cut(s)	616
AclWI	GGATC	2 cut(s)	39, 175
AcsI	RAATTY	2 cut(s)	195, 650
AfiI	CCNNNNNNNGG	3 cut(s)	28, 100, 101
AjnI	CCWGG	1 cut(s)	720
AluBI	AGCT	2 cut(s)	350, 522
AluI	AGCT	2 cut(s)	350, 522
AlwI	GGATC	2 cut(s)	39, 175
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	146, 415
ApoI	RAATTY	2 cut(s)	195, 650
AsiSI	GCGATCGC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	556
AsuC2I	CCSGG	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	556
BanI	GGYRCC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	523
BccI	CCATC	4 cut(s)	196, 486, 593, 607
BciT130I	CCWGG	1 cut(s)	722
BciVI	GTATCC	2 cut(s)	101, 551
BcnI	CCSGG	1 cut(s)	571
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	264, 589
BfuI	GTATCC	2 cut(s)	101, 551
BglII	AGATCT	1 cut(s)	226
Bme1390I	CCNGG	2 cut(s)	571, 722
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	467, 618
BmrFI	CCNGG	2 cut(s)	571, 722
BmsI	GCATC	1 cut(s)	242
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BpmI	CTGGAG	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 100, 101
Bse1I	ACTGG	2 cut(s)	219, 329
BseBI	CCWGG	1 cut(s)	722
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	3 cut(s)	28, 100, 101
BseNI	ACTGG	2 cut(s)	219, 329
BseYI	CCCAGC	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	2 cut(s)	148, 417
BshNI	GGYRCC	1 cut(s)	616
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	3 cut(s)	28, 100, 101
BsnI	GGCC	2 cut(s)	148, 417
Bsp143I	GATC	5 cut(s)	31, 167, 226, 253, 508
BspANI	GGCC	2 cut(s)	148, 417
BspHI	TCATGA	1 cut(s)	511
BspLI	GGNNCC	2 cut(s)	467, 618
BspPI	GGATC	2 cut(s)	39, 175
BspT107I	GGYRCC	1 cut(s)	616
BsrI	ACTGG	2 cut(s)	219, 329
BssMI	GATC	5 cut(s)	31, 167, 226, 253, 508
BssSI	CACGAG	1 cut(s)	523
Bst2BI	CACGAG	1 cut(s)	523
Bst2UI	CCWGG	1 cut(s)	722
Bst4CI	ACNGT	2 cut(s)	133, 495
BstC8I	GCNNGC	1 cut(s)	621
BstF5I	GGATG	1 cut(s)	566
BstKTI	GATC	5 cut(s)	34, 170, 229, 256, 511
BstMBI	GATC	5 cut(s)	31, 167, 226, 253, 508
BstMCI	CGRYCG	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	722
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	569, 720
BstSFI	CTRYAG	2 cut(s)	264, 589
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuI	GTATCC	2 cut(s)	101, 551
BsuRI	GGCC	2 cut(s)	148, 417
BtsCI	GGATG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	500
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	1 cut(s)	511
Cfr13I	GGNCC	1 cut(s)	556
CspCI	CAANNNNNGTGG	2 cut(s)	225, 260
CviAII	CATG	4 cut(s)	156, 177, 512, 667
CviJI	RGCY	8 cut(s)	59, 148, 350, 417, 468, 490, 501, 522
CviKI_1	RGCY	8 cut(s)	59, 148, 350, 417, 468, 490, 501, 522
DpnI	GATC	5 cut(s)	33, 169, 228, 255, 510
DpnII	GATC	5 cut(s)	31, 167, 226, 253, 508
Eco147I	AGGCCT	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRI	GAATTC	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	720
FaeI	CATG	4 cut(s)	159, 180, 515, 670
FatI	CATG	4 cut(s)	155, 176, 511, 666
FokI	GGATG	1 cut(s)	553
FspBI	CTAG	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	104
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	2 cut(s)	148, 417
HapII	CCGG	1 cut(s)	570
Hin1II	CATG	4 cut(s)	159, 180, 515, 670
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HinfI	GANTC	2 cut(s)	46, 137
HpaII	CCGG	1 cut(s)	570
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188III	TCNNGA	4 cut(s)	192, 482, 512, 544
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	547, 704
HpyCH4III	ACNGT	2 cut(s)	133, 495
HpyCH4V	TGCA	7 cut(s)	8, 43, 128, 180, 206, 623, 648
Hsp92II	CATG	4 cut(s)	159, 180, 515, 670
Kzo9I	GATC	5 cut(s)	31, 167, 226, 253, 508
LmnI	GCTCC	2 cut(s)	278, 465
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	230
MalI	GATC	5 cut(s)	33, 169, 228, 255, 510
MboI	GATC	5 cut(s)	31, 167, 226, 253, 508
MboII	GAAGA	3 cut(s)	66, 325, 692
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	6 cut(s)	12, 35, 195, 287, 433, 650
MlyI	GAGTC	2 cut(s)	40, 131
MnlI	CCTC	6 cut(s)	138, 159, 221, 242, 379, 672
MseI	TTAA	3 cut(s)	321, 446, 713
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	2 cut(s)	571, 722
MvaI	CCWGG	1 cut(s)	722
NciI	CCSGG	1 cut(s)	571
NdeII	GATC	5 cut(s)	31, 167, 226, 253, 508
NlaIII	CATG	4 cut(s)	159, 180, 515, 670
NlaIV	GGNNCC	2 cut(s)	467, 618
NspI	RCATGY	1 cut(s)	159
PagI	TCATGA	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	148
PflFI	GACNNNGTC	1 cut(s)	392
PfoI	TCCNGGA	1 cut(s)	569
Ple19I	CGATCG	1 cut(s)	256
PleI	GAGTC	2 cut(s)	40, 131
PpsI	GAGTC	2 cut(s)	40, 131
PpuMI	RGGWCCY	1 cut(s)	556
PsiI	TTATAA	1 cut(s)	690
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	720
PspFI	CCCAGC	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	720
PspN4I	GGNNCC	2 cut(s)	467, 618
PspPI	GGNCC	1 cut(s)	556
PspPPI	RGGWCCY	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	1 cut(s)	226
PsyI	GACNNNGTC	1 cut(s)	392
PvuI	CGATCG	1 cut(s)	256
RgaI	GCGATCGC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	321, 446, 713
Sau3AI	GATC	5 cut(s)	31, 167, 226, 253, 508
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	2 cut(s)	40, 131
ScrFI	CCNGG	2 cut(s)	571, 722
SetI	ASST	7 cut(s)	352, 524, 558, 631, 664, 696, 723
SfaAI	GCGATCGC	1 cut(s)	256
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	2 cut(s)	264, 589
SgfI	GCGATCGC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	556
Sse9I	AATT	6 cut(s)	12, 35, 195, 287, 433, 650
SseBI	AGGCCT	1 cut(s)	148
SspMI	CTAG	1 cut(s)	230
StuI	AGGCCT	1 cut(s)	148
StyD4I	CCNGG	2 cut(s)	569, 720
TaaI	ACNGT	2 cut(s)	133, 495
TaqI	TCGA	1 cut(s)	507
TasI	AATT	6 cut(s)	12, 35, 195, 287, 433, 650
Tru1I	TTAA	3 cut(s)	321, 446, 713
Tru9I	TTAA	3 cut(s)	321, 446, 713
TscAI	CASTG	1 cut(s)	500
TspDTI	ATGAA	2 cut(s)	66, 686
TspRI	CASTG	1 cut(s)	500
Tth111I	GACNNNGTC	1 cut(s)	392
VpaK11BI	GGWCC	1 cut(s)	556
XapI	RAATTY	2 cut(s)	195, 650
XceI	RCATGY	1 cut(s)	159
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.