RLG00000027498

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
12187222 .. 12194385
7164 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027498

Sequence Viewer

Length: 1446 bp
ATGGAAGCCTCTGAGATTCAAAGAGGTTGTGATGAGAATACTGAGGACCCTAAACTAGGAGGCTGGACAACCTTCCCTTTTGTTATTGCAACTGTGTTTGGTCTCTCTCTAGCTGCTGGCGGATGGGGATCGAATATGATAGTGTTTCTGATTTCAAAATTTCGTGTGAAGACCATTACTGCCACACAGATCAGTAACATCATCTTTGGTACCAACAATCTCTTTCCAATTGCAGGAGCCTTCATCACCGATTCCTTCTTCACCTCCTTCTTGGTCGTCACAGTTTTTTCTTTCATTTCTTTACTGGGTGTGATCATCTTAACCCTAATAGCAACTATCCCTTCCTTGAGGCCTTCACCGTGTTCAATTAGCACTCTCATCAGGTGTGAAGCTCCATCAAAGTTTCACTACTTAGTCCTATATGCAGCATTATCACTAGCTTCACTAGGACTTGGAGGCACCCGCTTCACAATTGCAACCATGGGAGCAGACCAATTCAACAATCCGAATGATCAAGGGGTTTTCTTTAATTGGTATTTTTTGGCTTTGTATATGTCCAGTGGTTTGGACTTTGGAATATGCTGCATTGCAAATGGTGTTGGATTGGGGGCGTTCTTATTGGGGAAACGATTTTATAAGCAAGTAAAACCAAAAGGGAGTCCATTCTTGAGCATAGCACGAGTATTGGTTGCAGCAATTCGGAAGAGGAAGATGTCATCAGAAACTTCAACAGAGCCTGATTACTATTATGGCGCAGGAGCGATGACTGACAATCCACCAACTAAAAGTTTCAGATTCCTGAACTGTGCAGCCTTGAAAATTGAAGAAGACAAACAATTTGAAGGCTCGTATGGAAACCCATGGAGGCTTTGCACTGTGAAAGAAGTGGAAGACCTCAAAACCCTAATTAAGATTATGCCACTGTGGTCTACTGGCATCTTCCTAAGCACACCAATAGGCATTTTCCGCAGCCTTACTATACTCCAAGCCCTAACCATGGATAGACACCTTGGTCCACACTTCAAAATCCCTGCTGCTTCATTTCTAGTGCTCAACCTCTTAGCCACAGCCATCTCCATCTTTATAATTGATCGCTTCATACTCCTCAAGTACAAGAATCTCACTGGACGAACTTTAAAACCGATCCAGCGAATAGGGATCGGTCACATCATCAACATTATTTCTGTAATTGGGTCTGCCCTAATCGAAAGAAGACGACTTGGAGTGGTAAGATCACATAGCCTTATGGACCAACCTGGTTCAGAGGTTCCCATGTTCGCCCTTTGGCTTGTGGCACGGTTATCTGTTATGGGAATCGCTTTGGAAAAGCACCTTATCCTCTCCACTATTCTTATGACTATTGGAATTGCAATTCTTTGCTGGGGTGCTCTGGCATCATCCTTCACAATCTACAATTTTGGAGTTCAGGAAGTTGTAAAGAACTAG

Protein Analysis

482

Amino Acids

52.84

Weight (kDa)

9.44

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 91 - 184 6.5e-11 POT family
PTR2 PF00854 190 - 440 1.1e-31 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45650 AT3G45650 AT3G45660 AT3G45660 AT3G45660 AT3G45680 AT3G45690 AT3G45700 AT3G45710 AT3G45720
fragaria_vesca FvH4_3g33820 FvH4_3g33850 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g33880 FvH4_3g45870 FvH4_7g20320 FvH4_7g20340 FvH4_7g20350 FvH4_7g20350
malus_domestica MD01G1112600.v1.1 MD03G1108700.v1.1 MD03G1108900.v1.1 MD03G1109100.v1.1 MD03G1109300.v1.1 MD07G1180500.v1.1 MD11G1121600.v1.1 MD11G1122000.v1.1 MD11G1122200.v1.1 MD11G1122300.v1.1 MD11G1122500.v1.1
prunus_persica Prupe.2G219800_v2.0.a1 Prupe.2G219800_v2.0.a1 Prupe.2G219900_v2.0.a1 Prupe.3G138100_v2.0.a1 Prupe.4G208900_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091800_v2.0.a1 Prupe.6G091900_v2.0.a1
pyrus_communis pycom01g14110 pycom03g08880 pycom03g08900 pycom03g08910 pycom07g17370 pycom11g10350 pycom11g10360
rosa_chinensis RchiOBHm_Chr1g0364271 RchiOBHm_Chr1g0364281 RchiOBHm_Chr1g0364291 RchiOBHm_Chr1g0364311 RchiOBHm_Chr5g0061391 RchiOBHm_Chr5g0061441
rosa_laevigata RLG00000014217 RLG00000027496 RLG00000027497 RLG00000027498 RLG00000035463 RLG00000035473 RLG00000035475 RLG00000035477
rosa_multiflora Rmu_co8497605.1_g000001 Rmu_sc0000671.1_g000002 Rmu_sc0003643.1_g000004 Rmu_sc0006608.1_g000010 Rmu_sc0006640.1_g000001 Rmu_sc0007470.1_g000001 Rmu_sc0015455.1_g000001 Rmu_sc0024335.1_g000001 Rmu_sc0031872.1_g000001 Rmu_sc0035434.1_g000001 Rmu_sc0035434.1_g000002
rosa_roxburghii Rroxscaffold_1G00019240 Rroxscaffold_1G00019270 Rroxscaffold_1G00019280 Rroxscaffold_4G00292440 Rroxscaffold_4G00292450 Rroxscaffold_4G00292460 Rroxscaffold_4G00292470
rosa_rugosa Rorug01G0315400 Rorug01G0315400 Rorug05G0340000 Rorug05G0340100 Rorug05G0340200 Rorug05G0340300
rosa_samantha Rh1AG322600 Rh1AG322700 Rh1AG322800 Rh1AG322900 Rh1AG323000 Rh1BG285500 Rh1BG285600 Rh1CG302100 Rh1CG302200 Rh1CG302300 Rh1DG317000 Rh1DG317100 Rh5AG402200 Rh5AG402300 Rh5AG402400 Rh5AG402600 Rh5BG414600 Rh5BG414700 Rh5BG414900 Rh5BG415100 Rh5CG439300 Rh5CG439400 Rh5CG439600 Rh5CG439800 Rh5DG429100 Rh5DG429500 Rh5DG429700
rosa_wichuraiana Rw1G028580 Rw1G028610 Rw1G028620 Rw5G037740 Rw5G037860 Rw5G037870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 636, 1085
AasI GACNNNNNNGTC 1 cut(s) 1011
Acc65I GGTACC 1 cut(s) 209
AccB1I GGYRCC 2 cut(s) 209, 458
AccI GTMKAC 1 cut(s) 929
AciI CCGC 3 cut(s) 120, 463, 967
AclWI GGATC 3 cut(s) 136, 1138, 1166
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 2 cut(s) 211, 1112
AfiI CCNNNNNNNGG 3 cut(s) 56, 233, 997
AgsI TTSAA 9 cut(s) 20, 156, 366, 499, 729, 817, 824, 842, 1024
AjnI CCWGG 1 cut(s) 1255
AluBI AGCT 3 cut(s) 113, 392, 440
AluI AGCT 3 cut(s) 113, 392, 440
Alw21I GWGCWC 2 cut(s) 1053, 1390
Alw26I GTCTC 1 cut(s) 107
AlwI GGATC 3 cut(s) 136, 1138, 1166
AlwNI CAGNNNCTG 1 cut(s) 737
AoxI GGCC 1 cut(s) 350
ApeKI GCWGC 7 cut(s) 113, 425, 582, 692, 809, 969, 1034
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
Asp718I GGTACC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 3 cut(s) 46, 1013, 1249
AsuHPI GGTGA 3 cut(s) 238, 253, 348
AvaII GGWCC 3 cut(s) 46, 1013, 1249
BanI GGYRCC 2 cut(s) 209, 458
BauI CACGAG 1 cut(s) 678
BbsI GAAGAC 4 cut(s) 176, 834, 897, 1219
Bbv12I GWGCWC 2 cut(s) 1053, 1390
BbvI GCAGC 7 cut(s) 100, 437, 569, 704, 821, 981, 1021
BccI CCATC 4 cut(s) 117, 403, 1079, 1085
BciT130I CCWGG 1 cut(s) 1257
BclI TGATCA 2 cut(s) 312, 511
BcoDI GTCTC 1 cut(s) 107
BfaI CTAG 6 cut(s) 56, 110, 437, 446, 1046, 1444
BisI GCNGC 7 cut(s) 114, 426, 583, 693, 810, 970, 1035
BlsI GCNGC 7 cut(s) 115, 427, 584, 694, 811, 971, 1036
Bme1390I CCNGG 1 cut(s) 1257
Bme18I GGWCC 3 cut(s) 46, 1013, 1249
BmgT120I GGNCC 3 cut(s) 46, 1013, 1249
BmiI GGNNCC 5 cut(s) 48, 211, 238, 460, 1269
BmrFI CCNGG 1 cut(s) 1257
BmrI ACTGGG 1 cut(s) 314
BmsI GCATC 2 cut(s) 945, 1403
BmuI ACTGGG 1 cut(s) 314
BpiI GAAGAC 4 cut(s) 176, 834, 897, 1219
Bpu10I CCTNAGC 1 cut(s) 944
BpuEI CTTGAG 3 cut(s) 367, 688, 1091
BsaBI GATNNNNATC 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 4 cut(s) 480, 860, 996, 1009
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 233, 997
Bse1I ACTGG 4 cut(s) 309, 558, 937, 1129
Bse3DI GCAATG 1 cut(s) 585
Bse8I GATNNNNATC 1 cut(s) 127
BseBI CCWGG 1 cut(s) 1257
BseDI CCNNGG 4 cut(s) 480, 860, 996, 1009
BseGI GGATG 2 cut(s) 128, 1397
BseJI GATNNNNATC 1 cut(s) 127
BseLI CCNNNNNNNGG 3 cut(s) 56, 233, 997
BseMI GCAATG 1 cut(s) 585
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 4 cut(s) 309, 558, 937, 1129
BseRI GAGGAG 1 cut(s) 1094
BseXI GCAGC 7 cut(s) 100, 437, 569, 704, 821, 981, 1021
BseYI CCCAGC 1 cut(s) 1380
BsgI GTGCAG 1 cut(s) 828
BshFI GGCC 1 cut(s) 352
BshNI GGYRCC 2 cut(s) 209, 458
BsiHKAI GWGCWC 2 cut(s) 1053, 1390
BslI CCNNNNNNNGG 3 cut(s) 56, 233, 997
BsmAI GTCTC 1 cut(s) 107
BsnI GGCC 1 cut(s) 352
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 2 cut(s) 1053, 1390
Bsp143I GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
Bsp19I CCATGG 3 cut(s) 480, 860, 996
BspACI CCGC 3 cut(s) 120, 463, 967
BspANI GGCC 1 cut(s) 352
BspCNI CTCAG 2 cut(s) 4, 34
BspLI GGNNCC 5 cut(s) 48, 211, 238, 460, 1269
BspPI GGATC 3 cut(s) 136, 1138, 1166
BspT107I GGYRCC 2 cut(s) 209, 458
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 585
BsrI ACTGG 4 cut(s) 309, 558, 937, 1129
BssECI CCNNGG 4 cut(s) 480, 860, 996, 1009
BssMI GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
BssSI CACGAG 1 cut(s) 678
BssT1I CCWWGG 4 cut(s) 480, 860, 996, 1009
Bst2BI CACGAG 1 cut(s) 678
Bst2UI CCWGG 1 cut(s) 1257
Bst4CI ACNGT 7 cut(s) 94, 283, 360, 806, 877, 924, 1299
Bst6I CTCTTC 1 cut(s) 698
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 5 cut(s) 12, 42, 412, 944, 1060
BstDSI CCRYGG 3 cut(s) 480, 860, 996
BstENI CCTNNNNNAGG 1 cut(s) 54
BstF5I GGATG 2 cut(s) 128, 1397
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 8 cut(s) 131, 192, 315, 514, 1093, 1146, 1161, 1235
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
BstMWI GCNNNNNNNGC 1 cut(s) 966
BstNI CCWGG 1 cut(s) 1257
BstSCI CCNGG 1 cut(s) 1255
BstV1I GCAGC 7 cut(s) 100, 437, 569, 704, 821, 981, 1021
BstV2I GAAGAC 4 cut(s) 176, 834, 897, 1219
BstXI CCANNNNNNTGG 1 cut(s) 565
BsuRI GGCC 1 cut(s) 352
BtgI CCRYGG 3 cut(s) 480, 860, 996
BtgZI GCGATG 1 cut(s) 776
BtsCI GGATG 2 cut(s) 128, 1397
BtsIMutI CAGTG 4 cut(s) 565, 873, 920, 1122
Cac8I GCNNGC 1 cut(s) 118
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 3 cut(s) 46, 1013, 1249
CsiI ACCWGGT 1 cut(s) 1255
Csp6I GTAC 2 cut(s) 210, 1111
CviAII CATG 4 cut(s) 481, 861, 997, 1273
CviQI GTAC 2 cut(s) 210, 1111
DdeI CTNAG 5 cut(s) 12, 42, 412, 944, 1060
DpnI GATC 8 cut(s) 130, 191, 314, 513, 1092, 1145, 1160, 1234
DpnII GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
DraI TTTAAA 1 cut(s) 1137
DrdI GACNNNNNNGTC 1 cut(s) 1011
DseDI GACNNNNNNGTC 1 cut(s) 1011
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
EciI GGCGGA 1 cut(s) 135
Eco130I CCWWGG 4 cut(s) 480, 860, 996, 1009
Eco147I AGGCCT 1 cut(s) 352
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 3 cut(s) 46, 1013, 1249
EcoNI CCTNNNNNAGG 1 cut(s) 54
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 1255
EcoT14I CCWWGG 4 cut(s) 480, 860, 996, 1009
ErhI CCWWGG 4 cut(s) 480, 860, 996, 1009
FaeI CATG 4 cut(s) 484, 864, 1000, 1276
FatI CATG 4 cut(s) 480, 860, 996, 1272
FauI CCCGC 1 cut(s) 470
FbaI TGATCA 2 cut(s) 312, 511
FblI GTMKAC 1 cut(s) 929
Fnu4HI GCNGC 7 cut(s) 114, 426, 583, 693, 810, 970, 1035
FokI GGATG 2 cut(s) 135, 1384
Fsp4HI GCNGC 7 cut(s) 114, 426, 583, 693, 810, 970, 1035
FspBI CTAG 6 cut(s) 56, 110, 437, 446, 1046, 1444
GlaI GCGC 1 cut(s) 754
GluI GCNGC 7 cut(s) 114, 426, 583, 693, 810, 970, 1035
GsaI CCCAGC 1 cut(s) 1384
HaeIII GGCC 1 cut(s) 352
HhaI GCGC 1 cut(s) 755
Hin1II CATG 4 cut(s) 484, 864, 1000, 1276
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HinfI GANTC 6 cut(s) 16, 251, 658, 795, 1117, 1314
HphI GGTGA 3 cut(s) 238, 253, 348
Hpy166II GTNNAC 2 cut(s) 930, 1016
Hpy188I TCNGA 7 cut(s) 13, 150, 507, 702, 721, 794, 1264
Hpy188III TCNNGA 3 cut(s) 667, 799, 1427
Hpy8I GTNNAC 2 cut(s) 930, 1016
HpyAV CCTTC 8 cut(s) 82, 250, 265, 277, 351, 363, 836, 1411
HpyCH4III ACNGT 7 cut(s) 94, 283, 360, 806, 877, 924, 1299
HpyF10VI GCNNNNNNNGC 1 cut(s) 966
HpyF3I CTNAG 5 cut(s) 12, 42, 412, 944, 1060
Hsp92II CATG 4 cut(s) 484, 864, 1000, 1276
HspAI GCGC 1 cut(s) 753
KpnI GGTACC 1 cut(s) 213
Ksp22I TGATCA 2 cut(s) 312, 511
Kzo9I GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
LmnI GCTCC 4 cut(s) 236, 397, 485, 758
Lsp1109I GCAGC 7 cut(s) 100, 437, 569, 704, 821, 981, 1021
LweI GCATC 2 cut(s) 945, 1403
MabI ACCWGGT 1 cut(s) 1255
MaeI CTAG 6 cut(s) 56, 110, 437, 446, 1046, 1444
MaeIII GTNAC 3 cut(s) 194, 277, 1163
MalI GATC 8 cut(s) 130, 191, 314, 513, 1092, 1145, 1160, 1234
MboI GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
MboII GAAGA 9 cut(s) 181, 250, 715, 721, 836, 839, 902, 931, 1224
MfeI CAATTG 2 cut(s) 228, 471
MhlI GDGCHC 2 cut(s) 1053, 1390
MlyI GAGTC 1 cut(s) 667
MmeI TCCRAC 1 cut(s) 580
MseI TTAA 4 cut(s) 320, 528, 909, 1136
MspR9I CCNGG 1 cut(s) 1257
MunI CAATTG 2 cut(s) 228, 471
MvaI CCWGG 1 cut(s) 1257
MwoI GCNNNNNNNGC 1 cut(s) 966
NcoI CCATGG 3 cut(s) 480, 860, 996
NdeII GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
NlaIII CATG 4 cut(s) 484, 864, 1000, 1276
NlaIV GGNNCC 5 cut(s) 48, 211, 238, 460, 1269
NmuCI GTSAC 2 cut(s) 277, 1163
PceI AGGCCT 1 cut(s) 352
PfeI GAWTC 5 cut(s) 16, 251, 795, 1117, 1314
PkrI GCNGC 7 cut(s) 115, 427, 584, 694, 811, 971, 1036
PleI GAGTC 1 cut(s) 666
PpsI GAGTC 1 cut(s) 666
PpuMI RGGWCCY 1 cut(s) 46
PsiI TTATAA 2 cut(s) 636, 1085
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 1 cut(s) 1255
PspFI CCCAGC 1 cut(s) 1380
PspGI CCWGG 1 cut(s) 1255
PspN4I GGNNCC 5 cut(s) 48, 211, 238, 460, 1269
PspPI GGNCC 3 cut(s) 46, 1013, 1249
PspPPI RGGWCCY 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 211, 1112
RsaNI GTAC 2 cut(s) 210, 1111
SaqAI TTAA 4 cut(s) 320, 528, 909, 1136
SatI GCNGC 7 cut(s) 114, 426, 583, 693, 810, 970, 1035
Sau3AI GATC 8 cut(s) 128, 189, 312, 511, 1090, 1143, 1158, 1232
Sau96I GGNCC 3 cut(s) 46, 1013, 1249
SchI GAGTC 1 cut(s) 667
ScrFI CCNGG 1 cut(s) 1257
SduI GDGCHC 2 cut(s) 1053, 1390
SexAI ACCWGGT 1 cut(s) 1255
SfaNI GCATC 2 cut(s) 945, 1403
SinI GGWCC 3 cut(s) 46, 1013, 1249
SmlI CTYRAG 3 cut(s) 346, 667, 1106
SmoI CTYRAG 3 cut(s) 346, 667, 1106
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 3 cut(s) 120, 463, 967
SspMI CTAG 6 cut(s) 56, 110, 437, 446, 1046, 1444
StuI AGGCCT 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 1255
StyI CCWWGG 4 cut(s) 480, 860, 996, 1009
TaaI ACNGT 7 cut(s) 94, 283, 360, 806, 877, 924, 1299
TaqI TCGA 2 cut(s) 131, 1206
TaqII GACCGA 1 cut(s) 1151
TatI WGTACW 1 cut(s) 1110
TfiI GAWTC 5 cut(s) 16, 251, 795, 1117, 1314
Tru1I TTAA 4 cut(s) 320, 528, 909, 1136
Tru9I TTAA 4 cut(s) 320, 528, 909, 1136
TscAI CASTG 4 cut(s) 565, 880, 927, 1129
TseFI GTSAC 2 cut(s) 277, 1163
TseI GCWGC 7 cut(s) 113, 425, 582, 692, 809, 969, 1034
Tsp45I GTSAC 2 cut(s) 277, 1163
TspDTI ATGAA 4 cut(s) 232, 283, 1029, 1087
TspRI CASTG 4 cut(s) 565, 880, 927, 1129
VpaK11BI GGWCC 3 cut(s) 46, 1013, 1249
XagI CCTNNNNNAGG 1 cut(s) 54
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 929
XspI CTAG 6 cut(s) 56, 110, 437, 446, 1046, 1444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.