FvH4_7g20360

Uncharacterised ACR, YagE family COG1723

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014410
Physical Location & Seq
Reverse (-)
16562167 .. 16565690
3524 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g20360.t1

Sequence Viewer

Length: 1224 bp
ATGCGGCGCGCCATAGACGCCCACCTCAAGGCCATGCGCCTCCTTCATCCGCTCTCTCCCTTCTCCTCTACTCCTTCTTCTCCTTCTCTCTTTTCCGTCCGTACATTTCTAACCCTAACCCACCCTCGCGCCGTTCCCAATTCCGTCTCCAAAACCCTAATCTTCCACTCAATTTCCACTCCTTCTCACTCGAGCTTCAGCAGCCGCGAAATTGGGCCGATCAGTAGTCTTGGGCTGTTTTCGATACGGTGCGTTTCGACGACGGCGTCGCCGGAGGGCGCGTTGGACTGGAACGAGCCGGTGTCGTGTTCGGAGGTCGGCGAGGGCAGTATGGGAAGTGTTGATAAAGATGCTAAGCCCAATGTTCCGGTCAGAGCTTACTTCTTTTCCACTAGTGTGGATTTGAGAAGCTTGGTGGAGCAGAACAGGGTGAATTTCATCCCACCCACGTCGAGAATGACCAACTATGTTGTGTTTAAATTCGGGGAGCTAAACAAGTCTAACAATGCATTGGGTCCTAGTTTAAGTGGGAGTGACTGTTGCTACATGGTAGTTTTCCAATATGGGTCCATTGTCTTGTTTAATGTTCGTGAACATGAGATTGATGGGTACTTGAAAATCGTGGAAAAACATGCATCTGGATTGCTACCTGAGATGAGAAAGGACGAGTATGAGGTGAGAGAGAAGCCAGATTTAGACACATGGATGGAAGGCGGATTGGATTACATAATGTTGCAGCACTTGAATACTGATGGAATTCGTACCATTGGTAGTGTTCTCGGTCAAAGTATTGCACTAGATTACTATGTTCGCCAGGTTGATGGAATGGTTGCCGAGTTTACTGACATCAATCGTGAAATGGAAACTACTGGAAAATTTAAGATGAAGAGGAAGAAACTTTTTCAGCTAGTGGGGAAAGCAAATTCTAATCTTGCTGATGTGATTCTTAAACTTGGACTTTTTGAGAGATCAGACATTGCCTGGAAGGATGCCAAATATGCTCAGATTTGGGAATACCTCAGGGATGAATTTGAATTAACTCAGAGATTTGCAAGTCTTGATTTTAAGTTGAAGTTTGTGGAGCACAATATTCGCTTTCTTCAGGAAATTCTTCAAAACAGGAAATCAGATTTTTTGGAATGGCTCATCATTGCACTAATAGGTGCTGAGATTATGCTCTCTCTTTATGACATTCTCCACAGATCAGCAATCGCATCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF155

Protein Analysis

408

Amino Acids

46.05

Weight (kDa)

6.57

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF155 PF02582 183 - 353 9.2e-35 RMND1/Sif2-Sif3/Mrx10, DUF155
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014410)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13610
fragaria_vesca FvH4_7g20360
malus_domestica MD01G1113300.v1.1 MD07G1180700.v1.1
prunus_persica Prupe.2G220000_v2.0.a1
pyrus_communis pycom01g14160 pycom07g17400
rosa_chinensis RchiOBHm_Chr1g0364321
rosa_laevigata RLG00000027495
rosa_multiflora Rmu_sc0007470.1_g000002
rosa_roxburghii Rroxscaffold_4G00292430
rosa_rugosa Rorug01G0315400
rosa_samantha Rh1AG323100 Rh1BG285700 Rh1CG302400 Rh1DG317200
rosa_wichuraiana Rw1G028630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 265
AccBSI CCGCTC 1 cut(s) 52
AccII CGCG 4 cut(s) 9, 129, 207, 281
AciI CCGC 4 cut(s) 4, 50, 205, 714
AcsI RAATTY 7 cut(s) 433, 479, 756, 875, 922, 1028, 1107
AcuI CTGAAG 2 cut(s) 181, 1085
AcyI GRCGYC 2 cut(s) 18, 266
AfaI GTAC 3 cut(s) 103, 611, 763
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 5 cut(s) 616, 745, 1034, 1072, 1115
AhlI ACTAGT 1 cut(s) 392
AjiI CACGTC 1 cut(s) 450
AjnI CCWGG 2 cut(s) 813, 980
AleI CACNNNNGTG 1 cut(s) 395
AluBI AGCT 5 cut(s) 195, 377, 411, 490, 907
AluI AGCT 5 cut(s) 195, 377, 411, 490, 907
Alw21I GWGCWC 1 cut(s) 1086
Alw26I GTCTC 1 cut(s) 151
Ama87I CYCGRG 1 cut(s) 190
AoxI GGCC 2 cut(s) 30, 215
ApeKI GCWGC 2 cut(s) 201, 736
ApoI RAATTY 7 cut(s) 433, 479, 756, 875, 922, 1028, 1107
AscI GGCGCGCC 1 cut(s) 7
Asp700I GAANNNNTTC 1 cut(s) 1110
AspLEI GCGC 5 cut(s) 9, 11, 39, 131, 281
AspS9I GGNCC 3 cut(s) 215, 515, 567
AsuHPI GGTGA 2 cut(s) 442, 688
AvaI CYCGRG 1 cut(s) 190
AvaII GGWCC 2 cut(s) 515, 567
AxyI CCTNAGG 1 cut(s) 1019
Bbv12I GWGCWC 1 cut(s) 1086
BbvI GCAGC 2 cut(s) 213, 748
BccI CCATC 4 cut(s) 599, 700, 746, 815
BceAI ACGGC 2 cut(s) 116, 279
BcgI CGANNNNNNTGC 2 cut(s) 1073, 1107
BciT130I CCWGG 2 cut(s) 815, 982
BcoDI GTCTC 1 cut(s) 151
BcuI ACTAGT 1 cut(s) 392
BfaI CTAG 4 cut(s) 393, 519, 797, 908
BisI GCNGC 4 cut(s) 5, 202, 205, 737
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 4 cut(s) 6, 203, 206, 738
Bme1390I CCNGG 2 cut(s) 815, 982
Bme18I GGWCC 2 cut(s) 515, 567
BmeT110I CYCGRG 1 cut(s) 190
BmgBI CACGTC 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 215, 515, 567
BmiI GGNNCC 2 cut(s) 516, 568
BmrFI CCNGG 2 cut(s) 815, 982
BmsI GCATC 3 cut(s) 340, 644, 979
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 11
BsaHI GRCGYC 2 cut(s) 18, 266
BsaWI WCCGGW 1 cut(s) 367
BsaXI ACNNNNNCTCC 4 cut(s) 266, 296, 523, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 298
Bse1I ACTGG 2 cut(s) 293, 874
Bse21I CCTNAGG 1 cut(s) 1019
Bse3DI GCAATG 2 cut(s) 975, 1149
BseBI CCWGG 2 cut(s) 815, 982
BseGI GGATG 5 cut(s) 46, 438, 711, 994, 1030
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMI GCAATG 2 cut(s) 975, 1149
BseMII CTCAG 5 cut(s) 642, 1016, 1033, 1055, 1158
BseNI ACTGG 2 cut(s) 293, 874
BsePI GCGCGC 1 cut(s) 7
BseRI GAGGAG 1 cut(s) 55
BseXI GCAGC 2 cut(s) 213, 748
Bsh1236I CGCG 4 cut(s) 9, 129, 207, 281
BshFI GGCC 2 cut(s) 32, 217
BsiHKAI GWGCWC 1 cut(s) 1086
BsiHKCI CYCGRG 1 cut(s) 190
BsiSI CCGG 3 cut(s) 272, 299, 368
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
BsnI GGCC 2 cut(s) 32, 217
BsoBI CYCGRG 1 cut(s) 190
Bsp1286I GDGCHC 1 cut(s) 1086
Bsp143I GATC 3 cut(s) 219, 968, 1202
Bsp1720I GCTNAGC 1 cut(s) 354
BspACI CCGC 4 cut(s) 4, 50, 205, 714
BspANI GGCC 2 cut(s) 32, 217
BspCNI CTCAG 5 cut(s) 643, 1015, 1032, 1054, 1159
BspFNI CGCG 4 cut(s) 9, 129, 207, 281
BspLI GGNNCC 2 cut(s) 516, 568
BsrBI CCGCTC 1 cut(s) 52
BsrDI GCAATG 2 cut(s) 975, 1149
BsrFI RCCGGY 1 cut(s) 298
BsrI ACTGG 2 cut(s) 293, 874
BssAI RCCGGY 1 cut(s) 298
BssHII GCGCGC 1 cut(s) 7
BssMI GATC 3 cut(s) 219, 968, 1202
BssNI GRCGYC 2 cut(s) 18, 266
Bst2UI CCWGG 2 cut(s) 815, 982
Bst4CI ACNGT 2 cut(s) 249, 539
Bst6I CTCTTC 1 cut(s) 881
BstACI GRCGYC 2 cut(s) 18, 266
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 6 cut(s) 354, 651, 1002, 1019, 1041, 1167
BstF5I GGATG 5 cut(s) 46, 438, 711, 994, 1030
BstFNI CGCG 4 cut(s) 9, 129, 207, 281
BstHHI GCGC 5 cut(s) 9, 11, 39, 131, 281
BstKTI GATC 3 cut(s) 222, 971, 1205
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 3 cut(s) 219, 968, 1202
BstMWI GCNNNNNNNGC 3 cut(s) 17, 201, 998
BstNI CCWGG 2 cut(s) 815, 982
BstNSI RCATGY 1 cut(s) 635
BstSCI CCNGG 2 cut(s) 813, 980
BstUI CGCG 4 cut(s) 9, 129, 207, 281
BstV1I GCAGC 2 cut(s) 213, 748
BstXI CCANNNNNNTGG 2 cut(s) 397, 821
Bsu36I CCTNAGG 1 cut(s) 1019
BsuRI GGCC 2 cut(s) 32, 217
BtrI CACGTC 1 cut(s) 450
BtsCI GGATG 5 cut(s) 46, 438, 711, 994, 1030
Cac8I GCNNGC 1 cut(s) 9
CfoI GCGC 5 cut(s) 9, 11, 39, 131, 281
Cfr10I RCCGGY 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 215, 515, 567
CseI GACGC 2 cut(s) 26, 255
Csp6I GTAC 3 cut(s) 102, 610, 762
CviAII CATG 5 cut(s) 34, 547, 596, 632, 702
CviQI GTAC 3 cut(s) 102, 610, 762
DdeI CTNAG 6 cut(s) 354, 651, 1002, 1019, 1041, 1167
DpnI GATC 3 cut(s) 221, 970, 1204
DpnII GATC 3 cut(s) 219, 968, 1202
DraI TTTAAA 1 cut(s) 478
DrdI GACNNNNNNGTC 1 cut(s) 265
DseDI GACNNNNNNGTC 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 881
EarI CTCTTC 1 cut(s) 881
EciI GGCGGA 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 515, 567
Eco57I CTGAAG 2 cut(s) 181, 1085
Eco81I CCTNAGG 1 cut(s) 1019
Eco88I CYCGRG 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 515
EcoRI GAATTC 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 813, 980
EcoT22I ATGCAT 2 cut(s) 511, 637
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 5 cut(s) 37, 550, 599, 635, 705
FatI CATG 5 cut(s) 33, 546, 595, 631, 701
Fnu4HI GCNGC 4 cut(s) 5, 202, 205, 737
FokI GGATG 5 cut(s) 33, 425, 718, 1001, 1037
Fsp4HI GCNGC 4 cut(s) 5, 202, 205, 737
FspBI CTAG 4 cut(s) 393, 519, 797, 908
GlaI GCGC 5 cut(s) 8, 10, 38, 130, 280
GluI GCNGC 4 cut(s) 5, 202, 205, 737
HaeIII GGCC 2 cut(s) 32, 217
HapII CCGG 3 cut(s) 272, 299, 368
HgaI GACGC 2 cut(s) 26, 255
HhaI GCGC 5 cut(s) 9, 11, 39, 131, 281
Hin1I GRCGYC 2 cut(s) 18, 266
Hin1II CATG 5 cut(s) 37, 550, 599, 635, 705
Hin6I GCGC 5 cut(s) 7, 9, 37, 129, 279
HinP1I GCGC 5 cut(s) 7, 9, 37, 129, 279
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 1 cut(s) 943
HpaII CCGG 3 cut(s) 272, 299, 368
HphI GGTGA 2 cut(s) 442, 688
Hpy166II GTNNAC 2 cut(s) 593, 840
Hpy188I TCNGA 6 cut(s) 313, 374, 973, 1005, 1044, 1129
Hpy188III TCNNGA 6 cut(s) 453, 590, 639, 854, 1058, 1103
Hpy8I GTNNAC 2 cut(s) 593, 840
Hpy99I CGWCG 4 cut(s) 262, 265, 271, 454
HpyAV CCTTC 7 cut(s) 53, 70, 84, 93, 192, 704, 979
HpyCH4III ACNGT 2 cut(s) 249, 539
HpyCH4IV ACGT 1 cut(s) 449
HpyCH4V TGCA 6 cut(s) 509, 635, 736, 794, 1052, 1154
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 201, 998
HpyF3I CTNAG 6 cut(s) 354, 651, 1002, 1019, 1041, 1167
HpySE526I ACGT 1 cut(s) 449
Hsp92I GRCGYC 2 cut(s) 18, 266
Hsp92II CATG 5 cut(s) 37, 550, 599, 635, 705
HspAI GCGC 5 cut(s) 7, 9, 37, 129, 279
Kzo9I GATC 3 cut(s) 219, 968, 1202
LmnI GCTCC 3 cut(s) 418, 487, 1081
Lsp1109I GCAGC 2 cut(s) 213, 748
LweI GCATC 3 cut(s) 340, 644, 979
MaeI CTAG 4 cut(s) 393, 519, 797, 908
MaeII ACGT 1 cut(s) 449
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 221, 970, 1204
MbiI CCGCTC 1 cut(s) 52
MboI GATC 3 cut(s) 219, 968, 1202
MboII GAAGA 6 cut(s) 69, 154, 898, 904, 1091, 1103
MhlI GDGCHC 1 cut(s) 1086
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 2 cut(s) 511, 637
MroXI GAANNNNTTC 1 cut(s) 1110
MseI TTAA 7 cut(s) 477, 524, 582, 879, 948, 1037, 1065
MslI CAYNNNNRTG 2 cut(s) 395, 704
MspI CCGG 3 cut(s) 272, 299, 368
MspR9I CCNGG 2 cut(s) 815, 982
MvaI CCWGG 2 cut(s) 815, 982
MvnI CGCG 4 cut(s) 9, 129, 207, 281
MwoI GCNNNNNNNGC 3 cut(s) 17, 201, 998
NdeII GATC 3 cut(s) 219, 968, 1202
NlaIII CATG 5 cut(s) 37, 550, 599, 635, 705
NlaIV GGNNCC 2 cut(s) 516, 568
NmeAIII GCCGAG 1 cut(s) 859
NmuCI GTSAC 1 cut(s) 533
NsiI ATGCAT 2 cut(s) 511, 637
NspI RCATGY 1 cut(s) 635
OliI CACNNNNGTG 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 190
PalAI GGCGCGCC 1 cut(s) 7
PauI GCGCGC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PdmI GAANNNNTTC 1 cut(s) 1110
PfeI GAWTC 1 cut(s) 943
PflFI GACNNNGTC 1 cut(s) 265
PkrI GCNGC 4 cut(s) 6, 203, 206, 738
PpuMI RGGWCCY 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 813, 980
PspGI CCWGG 2 cut(s) 813, 980
PspN4I GGNNCC 2 cut(s) 516, 568
PspPI GGNCC 3 cut(s) 215, 515, 567
PspPPI RGGWCCY 1 cut(s) 515
PspXI VCTCGAGB 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 265
PteI GCGCGC 1 cut(s) 7
RsaI GTAC 3 cut(s) 103, 611, 763
RsaNI GTAC 3 cut(s) 102, 610, 762
RseI CAYNNNNRTG 2 cut(s) 395, 704
SaqAI TTAA 7 cut(s) 477, 524, 582, 879, 948, 1037, 1065
SatI GCNGC 4 cut(s) 5, 202, 205, 737
Sau3AI GATC 3 cut(s) 219, 968, 1202
Sau96I GGNCC 3 cut(s) 215, 515, 567
ScrFI CCNGG 2 cut(s) 815, 982
SduI GDGCHC 1 cut(s) 1086
SfaNI GCATC 3 cut(s) 340, 644, 979
Sfr274I CTCGAG 1 cut(s) 190
SgsI GGCGCGCC 1 cut(s) 7
SinI GGWCC 2 cut(s) 515, 567
SlaI CTCGAG 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 395, 704
SmlI CTYRAG 2 cut(s) 26, 190
SmoI CTYRAG 2 cut(s) 26, 190
SpeI ACTAGT 1 cut(s) 392
SsiI CCGC 4 cut(s) 4, 50, 205, 714
SspI AATATT 1 cut(s) 1090
SspMI CTAG 4 cut(s) 393, 519, 797, 908
StyD4I CCNGG 2 cut(s) 813, 980
TaaI ACNGT 2 cut(s) 249, 539
TaiI ACGT 1 cut(s) 452
TaqI TCGA 4 cut(s) 191, 242, 257, 452
TaqII GACCGA 1 cut(s) 770
TauI GCSGC 2 cut(s) 7, 207
TfiI GAWTC 1 cut(s) 943
Tru1I TTAA 7 cut(s) 477, 524, 582, 879, 948, 1037, 1065
Tru9I TTAA 7 cut(s) 477, 524, 582, 879, 948, 1037, 1065
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 2 cut(s) 201, 736
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 4 cut(s) 35, 427, 899, 1041
TspGWI ACGGA 3 cut(s) 85, 89, 133
Tth111I GACNNNGTC 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 515, 567
XapI RAATTY 7 cut(s) 433, 479, 756, 875, 922, 1028, 1107
XceI RCATGY 1 cut(s) 635
XhoI CTCGAG 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 1110
XspI CTAG 4 cut(s) 393, 519, 797, 908
Zsp2I ATGCAT 2 cut(s) 511, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.