Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010432

Physical Location & Seq

Genomic Coordinates Reverse (-)

4464967 .. 4466052

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13825.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAGGCTGAATCTAGTAGTTCTGGACATCGACGACAGAAACGTCCACGACAAAAGAGATCATCGGATGTGATCAGTTATGAGAGCAGCGTTGCAAATCTGTCAAGAGAAGGGAAAGAGACGTTGATGATTGTGAGTCGCAGAAGACAATTGAATAAAATCCCCAATACGTCTTCTACTGTGTTTGATAATACATGTCCTCGTTACAACTGGCTTCGTTCTGGTTGGATCGCTGAGGAGCGTCTTAAGGTCTATGACCGACTCTACCGGTATTTTTATGATCCATTAGGGCAAATGTATCATACTCGTGGAGAAGTGGATCAAATCTATGCAGATATTGAAAAATCGCGCGCAATAGTCGTCTTCCGAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

14.74

Weight (kDa)

9.94

Isoelectric Point (pI)

68.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13825
fragaria_vesca	FvH4_3g02010 FvH4_7g22495 FvH4_7g22496
prunus_persica	Prupe.2G235600_v2.0.a1 Prupe.2G235700_v2.0.a1
rosa_laevigata	RLG00000027290 RLG00000027294
rosa_roxburghii	Rroxscaffold_4G00289540 Rroxscaffold_4G00289580 Rroxscaffold_6G00394720
rosa_rugosa	Rorug01G0334900 Rorug01G0335100 Rorug01G0335300
rosa_samantha	Rh1AG341800 Rh1AG342100 Rh1BG302500 Rh1CG318900 Rh1DG335000
rosa_wichuraiana	Rw1G030370 Rw1G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	42
AccII	CGCG	2 cut(s)	349, 351
AclWI	GGATC	3 cut(s)	236, 275, 327
AflII	CTTAAG	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	194
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	2 cut(s)	154, 341
Alw26I	GTCTC	1 cut(s)	113
AlwI	GGATC	3 cut(s)	236, 275, 327
ApeKI	GCWGC	1 cut(s)	87
AsiGI	ACCGGT	1 cut(s)	267
AspLEI	GCGC	2 cut(s)	351, 353
BauI	CACGAG	1 cut(s)	306
BbsI	GAAGAC	3 cut(s)	151, 165, 355
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	99
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	245
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
BpiI	GAAGAC	3 cut(s)	151, 165, 355
Bpu10I	CCTNAGC	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	73
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	1 cut(s)	215
BsePI	GCGCGC	1 cut(s)	349
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	349, 351
BshTI	ACCGGT	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	113
BsmBI	CGTCTC	1 cut(s)	113
Bsp143I	GATC	5 cut(s)	59, 72, 228, 280, 319
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	349, 351
BspPI	GGATC	3 cut(s)	236, 275, 327
BspTI	CTTAAG	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	267
BsrI	ACTGG	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	267
BssHII	GCGCGC	1 cut(s)	349
BssMI	GATC	5 cut(s)	59, 72, 228, 280, 319
BssSI	CACGAG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	181
BstAFI	CTTAAG	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	349, 351
BstHHI	GCGC	2 cut(s)	351, 353
BstKTI	GATC	5 cut(s)	62, 75, 231, 283, 322
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	5 cut(s)	59, 72, 228, 280, 319
BstNSI	RCATGY	1 cut(s)	198
BstUI	CGCG	2 cut(s)	349, 351
BstV1I	GCAGC	1 cut(s)	99
BstV2I	GAAGAC	3 cut(s)	151, 165, 355
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	351, 353
Cfr10I	RCCGGY	1 cut(s)	267
CseI	GACGC	1 cut(s)	230
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	2 cut(s)	8, 214
CviKI_1	RGCY	2 cut(s)	8, 214
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	5 cut(s)	61, 74, 230, 282, 321
DpnII	GATC	5 cut(s)	59, 72, 228, 280, 319
DrdI	GACNNNNNNGTC	1 cut(s)	42
DseDI	GACNNNNNNGTC	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	1 cut(s)	198
FaiI	YATR	6 cut(s)	81, 196, 255, 279, 303, 330
FatI	CATG	1 cut(s)	194
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	2 cut(s)	350, 352
GluI	GCNGC	1 cut(s)	88
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	2 cut(s)	351, 353
Hin1II	CATG	1 cut(s)	198
Hin6I	GCGC	2 cut(s)	349, 351
HinP1I	GCGC	2 cut(s)	349, 351
HinfI	GANTC	3 cut(s)	11, 136, 261
HpaII	CCGG	1 cut(s)	268
Hpy166II	GTNNAC	1 cut(s)	47
Hpy188I	TCNGA	2 cut(s)	67, 368
Hpy188III	TCNNGA	2 cut(s)	24, 105
Hpy8I	GTNNAC	1 cut(s)	47
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	3 cut(s)	43, 122, 170
HpyCH4V	TGCA	2 cut(s)	95, 332
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	3 cut(s)	43, 122, 170
Hsp92II	CATG	1 cut(s)	198
HspAI	GCGC	2 cut(s)	349, 351
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	59, 72, 228, 280, 319
LmnI	GCTCC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	9, 196, 207, 281
Lsp1109I	GCAGC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	3 cut(s)	43, 122, 170
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	5 cut(s)	61, 74, 230, 282, 321
MboI	GATC	5 cut(s)	59, 72, 228, 280, 319
MboII	GAAGA	3 cut(s)	156, 165, 355
MfeI	CAATTG	1 cut(s)	149
MluCI	AATT	1 cut(s)	149
MlyI	GAGTC	2 cut(s)	145, 255
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	2 cut(s)	210, 229
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	306
MspCI	CTTAAG	1 cut(s)	245
MspI	CCGG	1 cut(s)	268
MunI	CAATTG	1 cut(s)	149
MvnI	CGCG	2 cut(s)	349, 351
NdeII	GATC	5 cut(s)	59, 72, 228, 280, 319
NlaIII	CATG	1 cut(s)	198
NspI	RCATGY	1 cut(s)	198
PauI	GCGCGC	1 cut(s)	349
PciI	ACATGT	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	11
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	1 cut(s)	89
PleI	GAGTC	2 cut(s)	144, 255
PpsI	GAGTC	2 cut(s)	144, 255
PscI	ACATGT	1 cut(s)	194
PteI	GCGCGC	1 cut(s)	349
RseI	CAYNNNNRTG	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	88
Sau3AI	GATC	5 cut(s)	59, 72, 228, 280, 319
SchI	GAGTC	2 cut(s)	145, 255
SetI	ASST	4 cut(s)	46, 125, 173, 252
SmiMI	CAYNNNNRTG	1 cut(s)	306
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	1 cut(s)	149
SspMI	CTAG	1 cut(s)	15
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	3 cut(s)	46, 125, 173
TaqI	TCGA	1 cut(s)	31
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	149
TfiI	GAWTC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	1 cut(s)	87
Vha464I	CTTAAG	1 cut(s)	245
XceI	RCATGY	1 cut(s)	198
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.