Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010432

Physical Location & Seq

Genomic Coordinates Reverse (-)

10141731 .. 10142898

Gene Structure 1168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGAGGGGAGAGTCGACAGTAAACCATCACTTAACTCACCCAGAATCTCTAGTCACATGGGAGATTATCAGAGCGCATCCTAACCAAGGGAAGGTGAAGAAGCGAGGCACTACATGTGATTTTTATGGCCCAGAGTCTCCAGAATATGCCTCATTGCTACCGGAAGGCTGGCTTGCCGAGAAGAGAGTCATGCACCACGGGAGAAAATATATGTATTACTATGATCCGTTGGGGCATCAGTATACCACAAAAAAGGAAGTCCAGAAGGCTAAGCAAGAAGCTACGATTCAGAATATTGAGGAGCCAGCTAAAGCTGAGGATAATGCTGTCTCCAGCTTAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.37

Weight (kDa)

6.37

Isoelectric Point (pI)

65.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13825
fragaria_vesca	FvH4_3g02010 FvH4_7g22495 FvH4_7g22496
prunus_persica	Prupe.2G235600_v2.0.a1 Prupe.2G235700_v2.0.a1
rosa_laevigata	RLG00000027290 RLG00000027294
rosa_roxburghii	Rroxscaffold_4G00289540 Rroxscaffold_4G00289580 Rroxscaffold_6G00394720
rosa_rugosa	Rorug01G0334900 Rorug01G0335100 Rorug01G0335300
rosa_samantha	Rh1AG341800 Rh1AG342100 Rh1BG302500 Rh1CG318900 Rh1DG335000
rosa_wichuraiana	Rw1G030370 Rw1G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	17, 245
AclWI	GGATC	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	89, 94
AflIII	ACRYGT	1 cut(s)	116
AluBI	AGCT	4 cut(s)	284, 311, 317, 339
AluI	AGCT	4 cut(s)	284, 311, 317, 339
Alw26I	GTCTC	2 cut(s)	144, 337
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	131
AsuHPI	GGTGA	2 cut(s)	32, 109
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	36
BcoDI	GTCTC	2 cut(s)	144, 337
BfaI	CTAG	1 cut(s)	53
BlpI	GCTNAGC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	2 cut(s)	88, 247
BpmI	CTGGAG	2 cut(s)	126, 319
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	88, 199
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 94
Bse3DI	GCAATG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	88, 199
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	89, 94
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	309
BseRI	GAGGAG	1 cut(s)	317
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	89, 94
BsmAI	GTCTC	2 cut(s)	144, 337
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	226
Bsp1720I	GCTNAGC	1 cut(s)	273
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	88, 199
BssMI	GATC	1 cut(s)	226
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	88
Bst1107I	GTATAC	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	173, 177, 309
BstDEI	CTNAG	2 cut(s)	273, 318
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	1 cut(s)	229
BstMAI	GTCTC	2 cut(s)	144, 337
BstMBI	GATC	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	120
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	173, 177, 309
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	1 cut(s)	131
CviAII	CATG	3 cut(s)	60, 117, 193
CviJI	RGCY	9 cut(s)	132, 171, 175, 272, 284, 307, 311, 317, 339
CviKI_1	RGCY	9 cut(s)	132, 171, 175, 272, 284, 307, 311, 317, 339
DdeI	CTNAG	2 cut(s)	273, 318
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	63, 120, 196
FaiI	YATR	9 cut(s)	61, 118, 129, 150, 194, 213, 215, 225, 246
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FatI	CATG	3 cut(s)	59, 116, 192
FblI	GTMKAC	2 cut(s)	17, 245
FokI	GGATG	1 cut(s)	66
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	126, 319
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	3 cut(s)	63, 120, 196
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	5 cut(s)	14, 47, 137, 189, 289
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	32, 109
Hpy166II	GTNNAC	3 cut(s)	18, 25, 246
Hpy188I	TCNGA	2 cut(s)	74, 294
Hpy188III	TCNNGA	2 cut(s)	143, 265
Hpy8I	GTNNAC	3 cut(s)	18, 25, 246
HpyAV	CCTTC	3 cut(s)	88, 161, 262
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	273, 318
Hsp92II	CATG	3 cut(s)	63, 120, 196
HspAI	GCGC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	57, 147, 156, 157, 177, 278, 321
LweI	GCATC	2 cut(s)	88, 247
MaeI	CTAG	1 cut(s)	53
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	112, 196
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	3 cut(s)	23, 146, 198
MnlI	CCTC	4 cut(s)	101, 163, 295, 313
MseI	TTAA	2 cut(s)	35, 341
MspI	CCGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	3 cut(s)	63, 120, 196
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	120
PciI	ACATGT	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	47, 289
PleI	GAGTC	3 cut(s)	22, 145, 197
PpsI	GAGTC	3 cut(s)	22, 145, 197
PscI	ACATGT	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	131
SalI	GTCGAC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	35, 341
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	1 cut(s)	131
SchI	GAGTC	3 cut(s)	23, 146, 198
SetI	ASST	5 cut(s)	99, 286, 313, 319, 341
SfaNI	GCATC	2 cut(s)	88, 247
Sse9I	AATT	1 cut(s)	342
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	1 cut(s)	53
StyI	CCWWGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	17
TasI	AATT	1 cut(s)	342
TfiI	GAWTC	2 cut(s)	47, 289
Tru1I	TTAA	2 cut(s)	35, 341
Tru9I	TTAA	2 cut(s)	35, 341
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	219
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	120
XmiI	GTMKAC	2 cut(s)	17, 245
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.