Prupe.2G235700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010432
Physical Location & Seq
Forward (+)
25754428 .. 25754661
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G235700.1

Sequence Viewer

Length: 234 bp
ATGAACAACAATAATCCGCAGAGAGCTAATGAAGCTGCTCCTGTTCATGAGCAGCCTGGCATGTCGCCATTCTCAATGGTGACAGTGGAGAACGTCCAGGCACGGGCGCGCCGCAGGTGGAGGCAGCCCGATGCCACATCCACCTTCTTTGACTATACATCTGGCCGGTATAGCTGGCTTCTTCCAGGATGGGTGGTCGAAGAGCGACGGATGCCCACTAGCAGGCTCTACAGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

9.2

Weight (kDa)

10.69

Isoelectric Point (pI)

83.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 105
Acc36I ACCTGC 1 cut(s) 105
AccII CGCG 1 cut(s) 109
AciI CCGC 2 cut(s) 17, 112
AcoI YGGCCR 1 cut(s) 163
AfiI CCNNNNNNNGG 2 cut(s) 103, 222
AjnI CCWGG 3 cut(s) 55, 96, 184
AluBI AGCT 3 cut(s) 26, 35, 174
AluI AGCT 3 cut(s) 26, 35, 174
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 3 cut(s) 35, 52, 124
AscI GGCGCGCC 1 cut(s) 107
AspLEI GCGC 2 cut(s) 109, 111
AsuHPI GGTGA 1 cut(s) 91
BbvI GCAGC 3 cut(s) 22, 64, 136
BccI CCATC 1 cut(s) 183
BciT130I CCWGG 3 cut(s) 57, 98, 186
BfaI CTAG 1 cut(s) 219
BfmI CTRYAG 1 cut(s) 229
BfuAI ACCTGC 1 cut(s) 105
BisI GCNGC 4 cut(s) 36, 53, 112, 125
BlsI GCNGC 4 cut(s) 37, 54, 113, 126
Bme1390I CCNGG 3 cut(s) 57, 98, 186
BmrFI CCNGG 3 cut(s) 57, 98, 186
BmsI GCATC 2 cut(s) 121, 201
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 222
Bse118I RCCGGY 1 cut(s) 165
BseBI CCWGG 3 cut(s) 57, 98, 186
BseGI GGATG 3 cut(s) 137, 194, 216
BseLI CCNNNNNNNGG 2 cut(s) 103, 222
BsePI GCGCGC 1 cut(s) 107
BseXI GCAGC 3 cut(s) 22, 64, 136
Bsh1236I CGCG 1 cut(s) 109
BshFI GGCC 1 cut(s) 165
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 2 cut(s) 103, 222
BsnI GGCC 1 cut(s) 165
BspACI CCGC 2 cut(s) 17, 112
BspANI GGCC 1 cut(s) 165
BspFNI CGCG 1 cut(s) 109
BspHI TCATGA 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 105
BspQI GCTCTTC 1 cut(s) 195
BsrFI RCCGGY 1 cut(s) 165
BssAI RCCGGY 1 cut(s) 165
BssHII GCGCGC 1 cut(s) 107
Bst2UI CCWGG 3 cut(s) 57, 98, 186
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 3 cut(s) 109, 176, 224
BstF5I GGATG 3 cut(s) 137, 194, 216
BstFNI CGCG 1 cut(s) 109
BstHHI GCGC 2 cut(s) 109, 111
BstMWI GCNNNNNNNGC 3 cut(s) 32, 171, 211
BstNI CCWGG 3 cut(s) 57, 98, 186
BstNSI RCATGY 1 cut(s) 64
BstSCI CCNGG 3 cut(s) 55, 96, 184
BstSFI CTRYAG 1 cut(s) 229
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 22, 64, 136
BsuRI GGCC 1 cut(s) 165
BtsCI GGATG 3 cut(s) 137, 194, 216
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 105
Cac8I GCNNGC 3 cut(s) 109, 176, 224
CciI TCATGA 1 cut(s) 46
CfoI GCGC 2 cut(s) 109, 111
Cfr10I RCCGGY 1 cut(s) 165
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 47, 61
CviJI RGCY 8 cut(s) 26, 35, 55, 127, 165, 174, 178, 226
CviKI_1 RGCY 8 cut(s) 26, 35, 55, 127, 165, 174, 178, 226
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
EcoRII CCWGG 3 cut(s) 55, 96, 184
FaeI CATG 2 cut(s) 50, 64
FaiI YATR 4 cut(s) 48, 62, 156, 171
FatI CATG 2 cut(s) 46, 60
Fnu4HI GCNGC 4 cut(s) 36, 53, 112, 125
FokI GGATG 3 cut(s) 124, 201, 223
Fsp4HI GCNGC 4 cut(s) 36, 53, 112, 125
FspBI CTAG 1 cut(s) 219
GlaI GCGC 2 cut(s) 108, 110
GluI GCNGC 4 cut(s) 36, 53, 112, 125
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 166
HhaI GCGC 2 cut(s) 109, 111
Hin1II CATG 2 cut(s) 50, 64
Hin6I GCGC 2 cut(s) 107, 109
HinP1I GCGC 2 cut(s) 107, 109
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 91
Hpy188III TCNNGA 1 cut(s) 47
Hpy99I CGWCG 1 cut(s) 210
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 171, 211
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 2 cut(s) 50, 64
HspAI GCGC 2 cut(s) 107, 109
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 43
Lsp1109I GCAGC 3 cut(s) 22, 64, 136
LweI GCATC 2 cut(s) 121, 201
MaeI CTAG 1 cut(s) 219
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 2 cut(s) 173, 212
MnlI CCTC 1 cut(s) 114
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 3 cut(s) 57, 98, 186
MvaI CCWGG 3 cut(s) 57, 98, 186
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 3 cut(s) 32, 171, 211
NlaIII CATG 2 cut(s) 50, 64
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 64
PagI TCATGA 1 cut(s) 46
PalAI GGCGCGCC 1 cut(s) 107
PaqCI CACCTGC 1 cut(s) 105
PauI GCGCGC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 184
PkrI GCNGC 4 cut(s) 37, 54, 113, 126
Psp6I CCWGG 3 cut(s) 55, 96, 184
PspGI CCWGG 3 cut(s) 55, 96, 184
PteI GCGCGC 1 cut(s) 107
SapI GCTCTTC 1 cut(s) 195
SatI GCNGC 4 cut(s) 36, 53, 112, 125
ScrFI CCNGG 3 cut(s) 57, 98, 186
SetI ASST 6 cut(s) 28, 37, 96, 119, 146, 176
SfaNI GCATC 2 cut(s) 121, 201
SfcI CTRYAG 1 cut(s) 229
SgsI GGCGCGCC 1 cut(s) 107
SsiI CCGC 2 cut(s) 17, 112
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 55, 96, 184
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 198
TauI GCSGC 1 cut(s) 114
TscAI CASTG 1 cut(s) 90
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 3 cut(s) 35, 52, 124
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 3 cut(s) 17, 35, 45
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 90
XceI RCATGY 1 cut(s) 64
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.