Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0010432

Physical Location & Seq

Genomic Coordinates Reverse (-)

58307962 .. 58309148

Gene Structure 1187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G030370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAGAGGGGAAAGTCCTTAGTAAACCATCATTTAACTCAACCAGAATCCCTAGTCACATGGGAGATTATCAGAGCGCGCCCTAACCAAGGGAAGGTGAAGAAGCGAGGCATTACATGTGATTTTTATGGCCCAGAGTCGCCAGAATATGCCTCATTGCTACCGGAAGGCTGGCTCGCCGAGAAGAGAGTCATGCACCATGGGAGGAAATATATGTATTACTATGATCCGTTGGGGCATCAGTATACCACAAAAAAGGAAGTCAAGAAAGCTAAGAAAGCATCTAGGGTTCAGAATGTTGAGGAGCCAGCTAGAGCTGAGGACCATACACTTCAGGTGTATCCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

13.52

Weight (kDa)

9.43

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13825
fragaria_vesca	FvH4_3g02010 FvH4_7g22495 FvH4_7g22496
prunus_persica	Prupe.2G235600_v2.0.a1 Prupe.2G235700_v2.0.a1
rosa_laevigata	RLG00000027290 RLG00000027294
rosa_roxburghii	Rroxscaffold_4G00289540 Rroxscaffold_4G00289580 Rroxscaffold_6G00394720
rosa_rugosa	Rorug01G0334900 Rorug01G0335100 Rorug01G0335300
rosa_samantha	Rh1AG341800 Rh1AG342100 Rh1BG302500 Rh1CG318900 Rh1DG335000
rosa_wichuraiana	Rw1G030370 Rw1G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	89, 94
AflIII	ACRYGT	1 cut(s)	116
AluBI	AGCT	4 cut(s)	272, 311, 317, 347
AluI	AGCT	4 cut(s)	272, 311, 317, 347
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	130
AspLEI	GCGC	2 cut(s)	79, 81
AspS9I	GGNCC	2 cut(s)	131, 322
AsuHPI	GGTGA	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	322
BbvCI	CCTCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	36
BciVI	GTATCC	1 cut(s)	351
BfaI	CTAG	3 cut(s)	53, 285, 312
BfuI	GTATCC	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	131, 322
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	2 cut(s)	247, 290
Bpu10I	CCTNAGC	1 cut(s)	318
BsaJI	CCNNGG	2 cut(s)	88, 199
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 94
Bse3DI	GCAATG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	88, 199
BseLI	CCNNNNNNNGG	2 cut(s)	89, 94
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	309
BsePI	GCGCGC	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	89, 94
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	1 cut(s)	226
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	310
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	88, 199
BssHII	GCGCGC	1 cut(s)	77
BssMI	GATC	1 cut(s)	226
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	88, 199
Bst1107I	GTATAC	1 cut(s)	246
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	4 cut(s)	79, 173, 177, 309
BstDEI	CTNAG	3 cut(s)	19, 273, 318
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	79, 81
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	120
BstUI	CGCG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	246
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	199
Cac8I	GCNNGC	4 cut(s)	79, 173, 177, 309
CfoI	GCGC	2 cut(s)	79, 81
Cfr13I	GGNCC	2 cut(s)	131, 322
CviAII	CATG	4 cut(s)	60, 117, 193, 200
CviJI	RGCY	8 cut(s)	132, 171, 175, 272, 307, 311, 317, 347
CviKI_1	RGCY	8 cut(s)	132, 171, 175, 272, 307, 311, 317, 347
DdeI	CTNAG	3 cut(s)	19, 273, 318
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	88, 199
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	88, 199
ErhI	CCWWGG	2 cut(s)	88, 199
FaeI	CATG	4 cut(s)	63, 120, 196, 203
FatI	CATG	4 cut(s)	59, 116, 192, 199
FblI	GTMKAC	1 cut(s)	245
FspBI	CTAG	3 cut(s)	53, 285, 312
GlaI	GCGC	2 cut(s)	78, 80
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	2 cut(s)	79, 81
Hin1II	CATG	4 cut(s)	63, 120, 196, 203
Hin6I	GCGC	2 cut(s)	77, 79
HinP1I	GCGC	2 cut(s)	77, 79
HinfI	GANTC	3 cut(s)	47, 137, 189
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	2 cut(s)	25, 246
Hpy188I	TCNGA	2 cut(s)	74, 294
Hpy188III	TCNNGA	1 cut(s)	265
Hpy8I	GTNNAC	2 cut(s)	25, 246
HpyAV	CCTTC	2 cut(s)	88, 161
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	19, 273, 318
Hsp92II	CATG	4 cut(s)	63, 120, 196, 203
HspAI	GCGC	2 cut(s)	77, 79
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	57, 147, 156, 157, 177, 320, 321
LweI	GCATC	2 cut(s)	247, 290
MaeI	CTAG	3 cut(s)	53, 285, 312
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	112, 196
MlyI	GAGTC	2 cut(s)	146, 198
MnlI	CCTC	5 cut(s)	101, 163, 198, 295, 313
MseI	TTAA	1 cut(s)	35
MspI	CCGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	226
NlaIII	CATG	4 cut(s)	63, 120, 196, 203
NlaIV	GGNNCC	1 cut(s)	306
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	120
PauI	GCGCGC	1 cut(s)	77
PciI	ACATGT	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	47
PleI	GAGTC	2 cut(s)	145, 197
PpsI	GAGTC	2 cut(s)	145, 197
PscI	ACATGT	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	131, 322
PteI	GCGCGC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	35
Sau3AI	GATC	1 cut(s)	226
Sau96I	GGNCC	2 cut(s)	131, 322
SchI	GAGTC	2 cut(s)	146, 198
SetI	ASST	6 cut(s)	99, 274, 313, 319, 339, 349
SfaNI	GCATC	2 cut(s)	247, 290
SinI	GGWCC	1 cut(s)	322
SspMI	CTAG	3 cut(s)	53, 285, 312
StyI	CCWWGG	2 cut(s)	88, 199
TfiI	GAWTC	1 cut(s)	47
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspGWI	ACGGA	1 cut(s)	219
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	87
XceI	RCATGY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	3 cut(s)	53, 285, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.