Prupe.2G235600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0010432
Physical Location & Seq
Forward (+)
25751804 .. 25752756
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G235600.1

Sequence Viewer

Length: 372 bp
ATGAAGCTGCTCCTGTTCAGCAGCATGGCATGTCGTGGAGATAGTCCAAGATCGGGCACGCCGCAGGTGGATGCAGCACCATGCCACATCCACCTTCTTCGACTATACATCCCGCGGGGTATAGCTAGCTGGCTCTTTCTGGGATGGGTGGTCGAAGAGCGACGGATGCCCACCAGGAGACTCTACAAACATATTACCAAAAGAAGGAAAAAACTTGAACTCACAGAGAATCTTCAGCAAGCTAGTGAAGCTGCTCGTGGCATGTCGCCATTGTCAACGACGGTACACAAAATAGAAGAACTAGCAAGACGAAGGGAGAGGAAGCTACCCTTTTCAGCTGTTTTTCTTGACTTTTGTTCATCTTTGATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.22

Weight (kDa)

10.46

Isoelectric Point (pI)

90.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 55
Acc36I ACCTGC 1 cut(s) 55
AccII CGCG 1 cut(s) 115
AciI CCGC 3 cut(s) 62, 113, 115
AcuI CTGAAG 1 cut(s) 218
AfaI GTAC 1 cut(s) 285
AfiI CCNNNNNNNGG 2 cut(s) 53, 204
AgsI TTSAA 1 cut(s) 218
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 7 cut(s) 7, 125, 129, 242, 251, 325, 338
AluI AGCT 7 cut(s) 7, 125, 129, 242, 251, 325, 338
Alw26I GTCTC 1 cut(s) 172
ApeKI GCWGC 4 cut(s) 7, 21, 74, 251
AsuNHI GCTAGC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 59
BauI CACGAG 1 cut(s) 255
BbvI GCAGC 3 cut(s) 33, 86, 238
BccI CCATC 1 cut(s) 138
BciT130I CCWGG 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 172
BfaI CTAG 3 cut(s) 126, 243, 302
BfuAI ACCTGC 1 cut(s) 55
BisI GCNGC 5 cut(s) 8, 22, 62, 75, 252
BlsI GCNGC 5 cut(s) 9, 23, 63, 76, 253
Bme1390I CCNGG 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 2 cut(s) 61, 156
BmtI GCTAGC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 113
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 204
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 5 cut(s) 76, 87, 108, 149, 171
BseLI CCNNNNNNNGG 2 cut(s) 53, 204
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 3 cut(s) 33, 86, 238
Bsh1236I CGCG 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 53, 204
BsmAI GTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 50
BspACI CCGC 3 cut(s) 62, 113, 115
BspFNI CGCG 1 cut(s) 115
BspMI ACCTGC 1 cut(s) 55
BspOI GCTAGC 1 cut(s) 129
BspQI GCTCTTC 1 cut(s) 150
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 50
BssSI CACGAG 1 cut(s) 255
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 4 cut(s) 59, 127, 131, 240
BstDSI CCRYGG 1 cut(s) 113
BstF5I GGATG 5 cut(s) 76, 87, 108, 149, 171
BstFNI CGCG 1 cut(s) 115
BstKTI GATC 1 cut(s) 53
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 1 cut(s) 50
BstMWI GCNNNNNNNGC 2 cut(s) 166, 248
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 33, 265
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 3 cut(s) 33, 86, 238
BtgI CCRYGG 1 cut(s) 113
BtsCI GGATG 5 cut(s) 76, 87, 108, 149, 171
BveI ACCTGC 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 59, 127, 131, 240
Cfr42I CCGCGG 1 cut(s) 116
Csp6I GTAC 1 cut(s) 284
CviAII CATG 4 cut(s) 25, 30, 81, 262
CviJI RGCY 8 cut(s) 7, 125, 129, 133, 242, 251, 325, 338
CviKI_1 RGCY 8 cut(s) 7, 125, 129, 133, 242, 251, 325, 338
CviQI GTAC 1 cut(s) 284
DpnI GATC 1 cut(s) 52
DpnII GATC 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 173
FaeI CATG 4 cut(s) 28, 33, 84, 265
FaiI YATR 8 cut(s) 26, 31, 82, 106, 122, 192, 263, 370
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 4 cut(s) 24, 29, 80, 261
FauI CCCGC 2 cut(s) 108, 120
Fnu4HI GCNGC 5 cut(s) 8, 22, 62, 75, 252
FokI GGATG 5 cut(s) 74, 83, 95, 156, 178
Fsp4HI GCNGC 5 cut(s) 8, 22, 62, 75, 252
FspBI CTAG 3 cut(s) 126, 243, 302
GluI GCNGC 5 cut(s) 8, 22, 62, 75, 252
Hin1II CATG 4 cut(s) 28, 33, 84, 265
HincII GTYRAC 1 cut(s) 276
HindII GTYRAC 1 cut(s) 276
HinfI GANTC 2 cut(s) 180, 229
Hpy166II GTNNAC 2 cut(s) 276, 286
Hpy188III TCNNGA 1 cut(s) 347
Hpy8I GTNNAC 2 cut(s) 276, 286
Hpy99I CGWCG 2 cut(s) 165, 283
HpyAV CCTTC 3 cut(s) 104, 198, 306
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 166, 248
Hsp92II CATG 4 cut(s) 28, 33, 84, 265
KspI CCGCGG 1 cut(s) 116
Kzo9I GATC 1 cut(s) 50
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 6 cut(s) 26, 50, 115, 125, 160, 187
Lsp1109I GCAGC 3 cut(s) 33, 86, 238
LweI GCATC 2 cut(s) 61, 156
MaeI CTAG 3 cut(s) 126, 243, 302
MalI GATC 1 cut(s) 52
MboI GATC 1 cut(s) 50
MboII GAAGA 4 cut(s) 89, 167, 224, 308
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 1 cut(s) 312
MspA1I CMGCKG 2 cut(s) 115, 338
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 166, 248
NdeII GATC 1 cut(s) 50
NheI GCTAGC 1 cut(s) 125
NlaIII CATG 4 cut(s) 28, 33, 84, 265
NspI RCATGY 2 cut(s) 33, 265
PaqCI CACCTGC 1 cut(s) 55
PciSI GCTCTTC 1 cut(s) 150
PfeI GAWTC 1 cut(s) 229
PkrI GCNGC 5 cut(s) 9, 23, 63, 76, 253
PleI GAGTC 1 cut(s) 174
PpsI GAGTC 1 cut(s) 174
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
SacII CCGCGG 1 cut(s) 116
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 5 cut(s) 8, 22, 62, 75, 252
Sau3AI GATC 1 cut(s) 50
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 59
SetI ASST 9 cut(s) 9, 69, 96, 127, 131, 244, 253, 327, 340
SfaNI GCATC 2 cut(s) 61, 156
Sfr303I CCGCGG 1 cut(s) 116
SgrBI CCGCGG 1 cut(s) 116
SsiI CCGC 3 cut(s) 62, 113, 115
SspMI CTAG 3 cut(s) 126, 243, 302
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 2 cut(s) 100, 153
TauI GCSGC 1 cut(s) 64
TfiI GAWTC 1 cut(s) 229
TseI GCWGC 4 cut(s) 7, 21, 74, 251
TspDTI ATGAA 2 cut(s) 17, 348
TspGWI ACGGA 1 cut(s) 178
XceI RCATGY 2 cut(s) 33, 265
XspI CTAG 3 cut(s) 126, 243, 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.