FvH4_7g22495

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010432
Physical Location & Seq
Forward (+)
17707754 .. 17709218
1465 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22495.t1

Sequence Viewer

Length: 372 bp
ATGGAACAGGAAAATCAGATTAAAGATCCACTCAGCCTAGAAACCATTCACACTATCAAAACACAGCGAATGAAATGGAAGAATGTCCCTAAGAACCCTGGAGCAGAAATCTTTTTCAAGGACTACAGCAGCGAATCCCACAAAAGCAAGAGGAAGCTGTATGAATGGCTACCACCTGGATGGGTTGTCCAGGAAAGGGTCATGCCGTCGGGAAGGGTATACAGGTACTATTATGACCCCTCGGGGTTTATGTACCCGAAAAAGCATATAGCAAAGGCTGCGTATAAAGATATGGAAACAAGAGAAGTTGAAGACAATCCGCCGCCCTCTCTGGATTTTGGTGGCAAGGGGAAAGCTCCGATGGTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.44

Weight (kDa)

9.18

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 219, 366
AciI CCGC 2 cut(s) 320, 323
AclWI GGATC 1 cut(s) 20
AfaI GTAC 2 cut(s) 227, 254
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 2 cut(s) 118, 311
AjnI CCWGG 3 cut(s) 97, 175, 189
AluBI AGCT 2 cut(s) 157, 356
AluI AGCT 2 cut(s) 157, 356
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 129, 278
Asp700I GAANNNNTTC 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 141, 265
BccI CCATC 2 cut(s) 174, 355
BceAI ACGGC 1 cut(s) 190
BciT130I CCWGG 3 cut(s) 99, 177, 191
BfaI CTAG 1 cut(s) 38
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 3 cut(s) 130, 279, 323
BlsI GCNGC 3 cut(s) 131, 280, 324
Bme1390I CCNGG 3 cut(s) 99, 177, 191
BmeT110I CYCGRG 1 cut(s) 241
BmrFI CCNGG 3 cut(s) 99, 177, 191
BpiI GAAGAC 1 cut(s) 318
BpmI CTGGAG 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 97, 240
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseBI CCWGG 3 cut(s) 99, 177, 191
BseDI CCNNGG 2 cut(s) 97, 240
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 46
BseXI GCAGC 2 cut(s) 141, 265
BsiHKCI CYCGRG 1 cut(s) 241
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 71
BsoBI CYCGRG 1 cut(s) 241
Bsp143I GATC 1 cut(s) 25
BspACI CCGC 2 cut(s) 320, 323
BspCNI CTCAG 1 cut(s) 45
BspPI GGATC 1 cut(s) 20
BssECI CCNNGG 2 cut(s) 97, 240
BssMI GATC 1 cut(s) 25
BssNAI GTATAC 1 cut(s) 220
Bst1107I GTATAC 1 cut(s) 220
Bst2UI CCWGG 3 cut(s) 99, 177, 191
BstAPI GCANNNNNTGC 1 cut(s) 278
BstDEI CTNAG 2 cut(s) 32, 90
BstF5I GGATG 1 cut(s) 185
BstKTI GATC 1 cut(s) 28
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 278
BstNI CCWGG 3 cut(s) 99, 177, 191
BstSCI CCNGG 3 cut(s) 97, 175, 189
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 2 cut(s) 141, 265
BstV2I GAAGAC 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 180
BstYI RGATCY 1 cut(s) 25
BstZ17I GTATAC 1 cut(s) 220
BtsCI GGATG 1 cut(s) 185
Csp6I GTAC 2 cut(s) 226, 253
CviAII CATG 1 cut(s) 202
CviJI RGCY 5 cut(s) 36, 157, 169, 278, 356
CviKI_1 RGCY 5 cut(s) 36, 157, 169, 278, 356
CviQI GTAC 2 cut(s) 226, 253
DdeI CTNAG 2 cut(s) 32, 90
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
EciI GGCGGA 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 241
EcoRII CCWGG 3 cut(s) 97, 175, 189
FaeI CATG 1 cut(s) 205
FaiI YATR 9 cut(s) 162, 203, 220, 234, 251, 267, 269, 285, 293
FaqI GGGAC 1 cut(s) 71
FatI CATG 1 cut(s) 201
FblI GTMKAC 2 cut(s) 219, 366
Fnu4HI GCNGC 3 cut(s) 130, 279, 323
FokI GGATG 1 cut(s) 192
Fsp4HI GCNGC 3 cut(s) 130, 279, 323
FspBI CTAG 1 cut(s) 38
GluI GCNGC 3 cut(s) 130, 279, 323
GsuI CTGGAG 1 cut(s) 120
Hin1II CATG 1 cut(s) 205
HincII GTYRAC 1 cut(s) 367
HindII GTYRAC 1 cut(s) 367
HinfI GANTC 1 cut(s) 134
Hpy166II GTNNAC 2 cut(s) 220, 367
Hpy188I TCNGA 2 cut(s) 18, 360
Hpy188III TCNNGA 2 cut(s) 210, 332
Hpy8I GTNNAC 2 cut(s) 220, 367
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 1 cut(s) 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 278
HpyF3I CTNAG 2 cut(s) 32, 90
Hsp92II CATG 1 cut(s) 205
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 101, 361
LpnPI CCDG 8 cut(s) 84, 111, 162, 176, 189, 203, 208, 317
Lsp1109I GCAGC 2 cut(s) 141, 265
MaeI CTAG 1 cut(s) 38
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 2 cut(s) 91, 323
MflI RGATCY 1 cut(s) 25
MnlI CCTC 3 cut(s) 144, 250, 337
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 178
MspR9I CCNGG 3 cut(s) 99, 177, 191
MvaI CCWGG 3 cut(s) 99, 177, 191
MwoI GCNNNNNNNGC 1 cut(s) 278
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 134
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 3 cut(s) 131, 280, 324
Psp6I CCWGG 3 cut(s) 97, 175, 189
PspGI CCWGG 3 cut(s) 97, 175, 189
PsuI RGATCY 1 cut(s) 25
RsaI GTAC 2 cut(s) 227, 254
RsaNI GTAC 2 cut(s) 226, 253
RseI CAYNNNNRTG 1 cut(s) 178
SalI GTCGAC 1 cut(s) 365
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 130, 279, 323
Sau3AI GATC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 99, 177, 191
SetI ASST 4 cut(s) 159, 178, 227, 358
SfcI CTRYAG 1 cut(s) 124
SmiMI CAYNNNNRTG 1 cut(s) 178
SsiI CCGC 2 cut(s) 320, 323
SspMI CTAG 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 97, 175, 189
TaqI TCGA 1 cut(s) 366
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 2 cut(s) 129, 278
TspDTI ATGAA 2 cut(s) 86, 177
XmiI GTMKAC 2 cut(s) 219, 366
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.