Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010432

Physical Location & Seq

Genomic Coordinates Forward (+)

10367667 .. 10371200

Gene Structure 3534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027294

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGAGAGGGGAAAGTCTGTAGTAAACCATCATTTAACTCACCCAGAATCCCTAGTCACATGGGAGATTATCAGAGCGCGCCCTAACCAAGGGAAGGTAAAGAAGCGAGGCACTACATGTGATTTTTATGGCCCAGAGTCGCCAGAATATGCCTCATTGCTACCGGAAGGCTGGCTCGCCGAAAAGAGAGTCATGGACCATGGGAGGAAATATATGTATTACTATGATCTGCTGGGGCATCAGTATACCACAAAAAAGGAAGTCAAGAAAGCTAAGCAAGCATCTAGGGTTCAGAATATTGAGGAGCCAGCTAGAGCTAAGGATCATACACTTCAGCTGATAGAATTAAATAAGCAACAAATTTTCAAATTCGGACATGAACCTGTGCAAAATGATTCACATGCATTCACCAATTCAAGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.48

Weight (kDa)

9.41

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0010432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13825
fragaria_vesca	FvH4_3g02010 FvH4_7g22495 FvH4_7g22496
prunus_persica	Prupe.2G235600_v2.0.a1 Prupe.2G235700_v2.0.a1
rosa_laevigata	RLG00000027290 RLG00000027294
rosa_roxburghii	Rroxscaffold_4G00289540 Rroxscaffold_4G00289580 Rroxscaffold_6G00394720
rosa_rugosa	Rorug01G0334900 Rorug01G0335100 Rorug01G0335300
rosa_samantha	Rh1AG341800 Rh1AG342100 Rh1BG302500 Rh1CG318900 Rh1DG335000
rosa_wichuraiana	Rw1G030370 Rw1G030400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	245
AccII	CGCG	1 cut(s)	79
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	360, 368
AcuI	CTGAAG	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	89, 94
AflIII	ACRYGT	1 cut(s)	116
AgsI	TTSAA	2 cut(s)	367, 417
AluBI	AGCT	4 cut(s)	272, 311, 317, 337
AluI	AGCT	4 cut(s)	272, 311, 317, 337
AlwI	GGATC	1 cut(s)	330
AoxI	GGCC	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	360, 368
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspLEI	GCGC	2 cut(s)	79, 81
AspS9I	GGNCC	2 cut(s)	131, 196
AsuHPI	GGTGA	2 cut(s)	32, 400
AvaII	GGWCC	1 cut(s)	196
BccI	CCATC	1 cut(s)	36
BfaI	CTAG	3 cut(s)	53, 285, 312
BfmI	CTRYAG	1 cut(s)	18
BlpI	GCTNAGC	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	2 cut(s)	131, 196
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	2 cut(s)	247, 290
Bpu10I	CCTNAGC	1 cut(s)	318
Bpu1102I	GCTNAGC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	88, 199
BsaWI	WCCGGW	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 94
Bse3DI	GCAATG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	88, 199
BseLI	CCNNNNNNNGG	2 cut(s)	89, 94
BseMI	GCAATG	1 cut(s)	155
BsePI	GCGCGC	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	89, 94
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	226, 322
Bsp1720I	GCTNAGC	1 cut(s)	273
Bsp19I	CCATGG	1 cut(s)	199
BspANI	GGCC	1 cut(s)	132
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	1 cut(s)	330
BsrDI	GCAATG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	88, 199
BssHII	GCGCGC	1 cut(s)	77
BssMI	GATC	2 cut(s)	226, 322
BssNAI	GTATAC	1 cut(s)	246
BssT1I	CCWWGG	2 cut(s)	88, 199
Bst1107I	GTATAC	1 cut(s)	246
BstC8I	GCNNGC	5 cut(s)	79, 173, 177, 279, 309
BstDEI	CTNAG	2 cut(s)	273, 318
BstDSI	CCRYGG	1 cut(s)	199
BstENI	CCTNNNNNAGG	1 cut(s)	87
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	79, 81
BstKTI	GATC	2 cut(s)	229, 325
BstMBI	GATC	2 cut(s)	226, 322
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	120, 404
BstSFI	CTRYAG	1 cut(s)	18
BstUI	CGCG	1 cut(s)	79
BstZ17I	GTATAC	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	199
Cac8I	GCNNGC	5 cut(s)	79, 173, 177, 279, 309
CfoI	GCGC	2 cut(s)	79, 81
Cfr13I	GGNCC	2 cut(s)	131, 196
CviAII	CATG	6 cut(s)	60, 117, 193, 200, 377, 401
CviJI	RGCY	8 cut(s)	132, 171, 175, 272, 307, 311, 317, 337
CviKI_1	RGCY	8 cut(s)	132, 171, 175, 272, 307, 311, 317, 337
DdeI	CTNAG	2 cut(s)	273, 318
DpnI	GATC	2 cut(s)	228, 324
DpnII	GATC	2 cut(s)	226, 322
Eco130I	CCWWGG	2 cut(s)	88, 199
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	317
EcoNI	CCTNNNNNAGG	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	88, 199
EcoT22I	ATGCAT	1 cut(s)	406
ErhI	CCWWGG	2 cut(s)	88, 199
FaeI	CATG	6 cut(s)	63, 120, 196, 203, 380, 404
FatI	CATG	6 cut(s)	59, 116, 192, 199, 376, 400
FblI	GTMKAC	1 cut(s)	245
FspBI	CTAG	3 cut(s)	53, 285, 312
GlaI	GCGC	2 cut(s)	78, 80
GsaI	CCCAGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	2 cut(s)	79, 81
Hin1II	CATG	6 cut(s)	63, 120, 196, 203, 380, 404
Hin6I	GCGC	2 cut(s)	77, 79
HinP1I	GCGC	2 cut(s)	77, 79
HinfI	GANTC	4 cut(s)	47, 137, 189, 395
HpaII	CCGG	1 cut(s)	164
HphI	GGTGA	2 cut(s)	32, 400
Hpy166II	GTNNAC	2 cut(s)	25, 246
Hpy188I	TCNGA	3 cut(s)	74, 294, 374
Hpy188III	TCNNGA	2 cut(s)	265, 417
Hpy8I	GTNNAC	2 cut(s)	25, 246
HpyAV	CCTTC	2 cut(s)	88, 161
HpyCH4V	TGCA	2 cut(s)	388, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	2 cut(s)	273, 318
Hsp92II	CATG	6 cut(s)	63, 120, 196, 203, 380, 404
HspAI	GCGC	2 cut(s)	77, 79
Kzo9I	GATC	2 cut(s)	226, 322
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	57, 147, 156, 157, 177, 218, 321, 396
LweI	GCATC	2 cut(s)	247, 290
MaeI	CTAG	3 cut(s)	53, 285, 312
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	228, 324
MboI	GATC	2 cut(s)	226, 322
MluCI	AATT	4 cut(s)	344, 360, 368, 412
MlyI	GAGTC	2 cut(s)	146, 198
MnlI	CCTC	4 cut(s)	101, 163, 198, 295
Mph1103I	ATGCAT	1 cut(s)	406
MseI	TTAA	2 cut(s)	35, 347
MspA1I	CMGCKG	1 cut(s)	337
MspI	CCGG	1 cut(s)	164
Mva1269I	GAATGC	1 cut(s)	404
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	226, 322
NlaIII	CATG	6 cut(s)	63, 120, 196, 203, 380, 404
NlaIV	GGNNCC	1 cut(s)	306
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	406
NspI	RCATGY	2 cut(s)	120, 404
PauI	GCGCGC	1 cut(s)	77
PciI	ACATGT	1 cut(s)	116
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	47, 395
PleI	GAGTC	2 cut(s)	145, 197
PpsI	GAGTC	2 cut(s)	145, 197
PscI	ACATGT	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	232
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	2 cut(s)	131, 196
PteI	GCGCGC	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	35, 347
Sau3AI	GATC	2 cut(s)	226, 322
Sau96I	GGNCC	2 cut(s)	131, 196
SchI	GAGTC	2 cut(s)	146, 198
SetI	ASST	6 cut(s)	99, 274, 313, 319, 339, 385
SfaNI	GCATC	2 cut(s)	247, 290
SfcI	CTRYAG	1 cut(s)	18
SinI	GGWCC	1 cut(s)	196
Sse9I	AATT	4 cut(s)	344, 360, 368, 412
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	3 cut(s)	53, 285, 312
StyI	CCWWGG	2 cut(s)	88, 199
TasI	AATT	4 cut(s)	344, 360, 368, 412
TfiI	GAWTC	2 cut(s)	47, 395
Tru1I	TTAA	2 cut(s)	35, 347
Tru9I	TTAA	2 cut(s)	35, 347
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	196
XagI	CCTNNNNNAGG	1 cut(s)	87
XapI	RAATTY	2 cut(s)	360, 368
XceI	RCATGY	2 cut(s)	120, 404
XmiI	GTMKAC	1 cut(s)	245
XspI	CTAG	3 cut(s)	53, 285, 312
Zsp2I	ATGCAT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.