FvH4_7g22496

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010432
Physical Location & Seq
Forward (+)
17710744 .. 17712133
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22496.t1

Sequence Viewer

Length: 339 bp
ATGGAAAGAGGAGAGTCAAGTCGAGCAGCTTATCGGCGAGGCTTAGAAGCTGAGAAGGTGTTCCTCCGCTTTGAAGATTTAGAGTCGGAAGAGACGTGGGAAAGAGTGACAGAACGCCCTAAGAAAGGCGCCAAGAAGCAGCCTGAGACAAAATCAGAGATATATGGGTATCAGAGTGCTGGATTCGAATCTGTTCTCCGAAGAGGCTGGCTAGCCGAAAGGAGAAAGATGGAGCATGGAAGGATCTACATGTATTACTATGATCGGTCAGGAAAACAATACACCAGATTGAAGAAAGCAAAAGAAGCCATGGAACTGGAAGCTGCTAGGGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.38

Weight (kDa)

9.42

Isoelectric Point (pI)

65.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 128
AciI CCGC 1 cut(s) 67
AclWI GGATC 1 cut(s) 251
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 2 cut(s) 74, 292
AjiI CACGTC 1 cut(s) 96
AluBI AGCT 3 cut(s) 29, 50, 323
AluI AGCT 3 cut(s) 29, 50, 323
Alw26I GTCTC 2 cut(s) 86, 140
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 3 cut(s) 26, 139, 323
Asp700I GAANNNNTTC 2 cut(s) 59, 192
AspLEI GCGC 1 cut(s) 131
AsuII TTCGAA 1 cut(s) 186
AsuNHI GCTAGC 1 cut(s) 211
BanI GGYRCC 1 cut(s) 128
BbvI GCAGC 3 cut(s) 38, 151, 310
BccI CCATC 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 86, 140
BfaI CTAG 2 cut(s) 212, 327
BfoI RGCGCY 1 cut(s) 132
BisI GCNGC 3 cut(s) 27, 140, 324
BlsI GCNGC 3 cut(s) 28, 141, 325
BmgBI CACGTC 1 cut(s) 96
BmiI GGNNCC 1 cut(s) 130
BmtI GCTAGC 1 cut(s) 215
Bpu14I TTCGAA 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 309
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 309
BseJI GATNNNNATC 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 2 cut(s) 42, 135
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 24
BseXI GCAGC 3 cut(s) 38, 151, 310
BshNI GGYRCC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 2 cut(s) 86, 140
BsmBI CGTCTC 1 cut(s) 86
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 2 cut(s) 243, 262
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 67
BspCNI CTCAG 2 cut(s) 43, 136
BspLI GGNNCC 1 cut(s) 130
BspOI GCTAGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 251
BspT104I TTCGAA 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 128
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 2 cut(s) 243, 262
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 309
Bst6I CTCTTC 2 cut(s) 84, 196
BstACI GRCGYC 1 cut(s) 129
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 209, 213
BstDEI CTNAG 4 cut(s) 43, 51, 120, 144
BstDSI CCRYGG 1 cut(s) 309
BstENI CCTNNNNNAGG 1 cut(s) 123
BstH2I RGCGCY 1 cut(s) 132
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 2 cut(s) 246, 265
BstMAI GTCTC 2 cut(s) 86, 140
BstMBI GATC 2 cut(s) 243, 262
BstMWI GCNNNNNNNGC 2 cut(s) 305, 329
BstNSI RCATGY 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 38, 151, 310
BstX2I RGATCY 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 316
BstYI RGATCY 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 309
BtrI CACGTC 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 209, 213
CfoI GCGC 1 cut(s) 131
CviAII CATG 3 cut(s) 236, 250, 310
DdeI CTNAG 4 cut(s) 43, 51, 120, 144
DinI GGCGCC 1 cut(s) 130
DpnI GATC 2 cut(s) 245, 264
DpnII GATC 2 cut(s) 243, 262
Eam1104I CTCTTC 2 cut(s) 84, 196
EarI CTCTTC 2 cut(s) 84, 196
Eco130I CCWWGG 1 cut(s) 309
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoT14I CCWWGG 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 130
EheI GGCGCC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 309
Esp3I CGTCTC 1 cut(s) 86
FaeI CATG 3 cut(s) 239, 253, 313
FaiI YATR 6 cut(s) 163, 165, 237, 251, 261, 311
FatI CATG 3 cut(s) 235, 249, 309
Fnu4HI GCNGC 3 cut(s) 27, 140, 324
Fsp4HI GCNGC 3 cut(s) 27, 140, 324
FspBI CTAG 2 cut(s) 212, 327
GlaI GCGC 1 cut(s) 130
GluI GCNGC 3 cut(s) 27, 140, 324
HaeII RGCGCY 1 cut(s) 132
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 3 cut(s) 239, 253, 313
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 4 cut(s) 14, 83, 183, 188
Hpy188I TCNGA 4 cut(s) 88, 157, 174, 200
Hpy188III TCNNGA 1 cut(s) 270
HpyAV CCTTC 2 cut(s) 49, 234
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 329
HpyF3I CTNAG 4 cut(s) 43, 51, 120, 144
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 3 cut(s) 239, 253, 313
HspAI GCGC 1 cut(s) 129
KasI GGCGCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 243, 262
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 6 cut(s) 156, 165, 193, 255, 298, 302
Lsp1109I GCAGC 3 cut(s) 38, 151, 310
MaeI CTAG 2 cut(s) 212, 327
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 245, 264
MboI GATC 2 cut(s) 243, 262
MboII GAAGA 4 cut(s) 86, 101, 213, 304
MflI RGATCY 1 cut(s) 243
Mly113I GGCGCC 1 cut(s) 129
MlyI GAGTC 2 cut(s) 23, 92
MmeI TCCRAC 1 cut(s) 66
MnlI CCTC 3 cut(s) 32, 74, 197
MroXI GAANNNNTTC 2 cut(s) 59, 192
MwoI GCNNNNNNNGC 2 cut(s) 305, 329
NarI GGCGCC 1 cut(s) 129
NcoI CCATGG 1 cut(s) 309
NdeII GATC 2 cut(s) 243, 262
NheI GCTAGC 1 cut(s) 211
NlaIII CATG 3 cut(s) 239, 253, 313
NlaIV GGNNCC 1 cut(s) 130
NmuCI GTSAC 1 cut(s) 106
NspI RCATGY 1 cut(s) 253
NspV TTCGAA 1 cut(s) 186
PciI ACATGT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PdmI GAANNNNTTC 2 cut(s) 59, 192
PfeI GAWTC 2 cut(s) 183, 188
PkrI GCNGC 3 cut(s) 28, 141, 325
PleI GAGTC 2 cut(s) 22, 91
PluTI GGCGCC 1 cut(s) 132
PpsI GAGTC 2 cut(s) 22, 91
PscI ACATGT 1 cut(s) 249
PspN4I GGNNCC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 243
SatI GCNGC 3 cut(s) 27, 140, 324
Sau3AI GATC 2 cut(s) 243, 262
SchI GAGTC 2 cut(s) 23, 92
SetI ASST 5 cut(s) 31, 52, 60, 98, 325
SfoI GGCGCC 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 186
SsiI CCGC 1 cut(s) 67
SspDI GGCGCC 1 cut(s) 128
SspMI CTAG 2 cut(s) 212, 327
StyI CCWWGG 1 cut(s) 309
TaiI ACGT 1 cut(s) 98
TaqI TCGA 2 cut(s) 22, 186
TaqII GACCGA 1 cut(s) 255
TfiI GAWTC 2 cut(s) 183, 188
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 3 cut(s) 26, 139, 323
Tsp45I GTSAC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 123
XceI RCATGY 1 cut(s) 253
XmnI GAANNNNTTC 2 cut(s) 59, 192
XspI CTAG 2 cut(s) 212, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.