AT5G13900

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016718
Physical Location & Seq
Reverse (-)
4481122 .. 4481950
829 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13900.1

Sequence Viewer

Length: 456 bp
ATGATGATGGGGATGAAGTTTTTCTCTTTTTACGTTGTACTTCTTCTAGTTGCAGCTAGCTCGGGGATGCGGATAAATGGGCAGAGCGTTTCGTGTCTAAACCAACTTGCTCCATGCCTAAATTACCTGAATGGGACCAAGGAAGTACCTCAAGTTTGTTGTAATCCTCTCAAATCAGTGATAAGGAACAATCCAGAGTGCTTGTGCCGTATGATTAGTAACCGTTGGAGTTCTCAAGCCGAGCGAGCTGGCATCGATGTCAATGATGCTCAAATGTTGCCTGCTCGATGTGGAGAACATGTCAATCCCATTGCTTGCTTGACTCGTTCTAGAGGAGGATCTACAAACTCAGACCGAAGTTCCTCCATTGGCAACACCTTTTCTCAGTCCTATTGGATGACAACATTAGCTATTGCAGCCACTGTTTTGTCATATTGCCATCACATAATTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

151

Amino Acids

16.53

Weight (kDa)

8.82

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 14 - 106 1.3e-13 Probable lipid transfer
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13900
fragaria_vesca FvH4_6g54420
malus_domestica MD17G1004800.v1.1
prunus_persica Prupe.3G314800_v2.0.a1
pyrus_communis pycom17g00120
rosa_chinensis RchiOBHm_Chr2g0176671
rosa_laevigata RLG00000022434
rosa_multiflora Rmu_co8195448.1_g000001
rosa_samantha Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 70
AclWI GGATC 1 cut(s) 346
AfaI GTAC 2 cut(s) 39, 147
AflIII ACRYGT 1 cut(s) 298
AluBI AGCT 5 cut(s) 56, 60, 248, 410, 453
AluI AGCT 5 cut(s) 56, 60, 248, 410, 453
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 61
ApeKI GCWGC 2 cut(s) 53, 416
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 135
AsuNHI GCTAGC 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 61
AvaII GGWCC 1 cut(s) 135
BbvI GCAGC 2 cut(s) 65, 428
BccI CCATC 1 cut(s) 447
BceAI ACGGC 1 cut(s) 192
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BfaI CTAG 3 cut(s) 47, 57, 330
BisI GCNGC 2 cut(s) 54, 417
BlsI GCNGC 2 cut(s) 55, 418
Bme18I GGWCC 1 cut(s) 135
BmeT110I CYCGRG 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 136
BmsI GCATC 3 cut(s) 57, 256, 261
BmtI GCTAGC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 135, 219
Bsa29I ATCGAT 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 138
BsaXI ACNNNNNCTCC 2 cut(s) 285, 315
Bse3DI GCAATG 1 cut(s) 309
BseCI ATCGAT 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 138
BseGI GGATG 3 cut(s) 18, 72, 402
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 2 cut(s) 363, 398
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 2 cut(s) 65, 428
BshVI ATCGAT 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 61
BslFI GGGAC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 61
Bsp143I GATC 1 cut(s) 338
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 362, 397
BspDI ATCGAT 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 136
BspOI GCTAGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 138
BssMI GATC 1 cut(s) 338
BssT1I CCWWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 224, 424
BstC8I GCNNGC 5 cut(s) 58, 246, 250, 282, 316
BstDEI CTNAG 2 cut(s) 349, 384
BstF5I GGATG 3 cut(s) 18, 72, 402
BstKTI GATC 1 cut(s) 341
BstMBI GATC 1 cut(s) 338
BstMWI GCNNNNNNNGC 2 cut(s) 245, 416
BstNSI RCATGY 1 cut(s) 302
BstV1I GCAGC 2 cut(s) 65, 428
BstX2I RGATCY 1 cut(s) 338
BstYI RGATCY 1 cut(s) 338
Bsu15I ATCGAT 1 cut(s) 255
BsuTUI ATCGAT 1 cut(s) 255
BtsCI GGATG 3 cut(s) 18, 72, 402
BtsIMutI CAGTG 2 cut(s) 183, 420
Cac8I GCNNGC 5 cut(s) 58, 246, 250, 282, 316
CaiI CAGNNNCTG 1 cut(s) 422
Cfr13I GGNCC 1 cut(s) 135
ClaI ATCGAT 1 cut(s) 255
Csp6I GTAC 2 cut(s) 38, 146
CviAII CATG 2 cut(s) 114, 299
CviJI RGCY 7 cut(s) 56, 60, 239, 248, 410, 419, 453
CviKI_1 RGCY 7 cut(s) 56, 60, 239, 248, 410, 419, 453
CviQI GTAC 2 cut(s) 38, 146
DdeI CTNAG 2 cut(s) 349, 384
DpnI GATC 1 cut(s) 340
DpnII GATC 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 135
Eco88I CYCGRG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 138
FaeI CATG 2 cut(s) 117, 302
FaiI YATR 5 cut(s) 115, 212, 300, 433, 446
FaqI GGGAC 1 cut(s) 148
FatI CATG 2 cut(s) 113, 298
Fnu4HI GCNGC 2 cut(s) 54, 417
FokI GGATG 3 cut(s) 25, 79, 409
Fsp4HI GCNGC 2 cut(s) 54, 417
FspBI CTAG 3 cut(s) 47, 57, 330
GluI GCNGC 2 cut(s) 54, 417
Hin1II CATG 2 cut(s) 117, 302
HinfI GANTC 1 cut(s) 322
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 2 cut(s) 194, 330
HpyCH4III ACNGT 2 cut(s) 224, 424
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 2 cut(s) 53, 416
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 416
HpyF3I CTNAG 2 cut(s) 349, 384
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 117, 302
Kzo9I GATC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 4 cut(s) 140, 207, 234, 294
Lsp1109I GCAGC 2 cut(s) 65, 428
LweI GCATC 3 cut(s) 57, 256, 261
MaeI CTAG 3 cut(s) 47, 57, 330
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 340
MboI GATC 1 cut(s) 338
MboII GAAGA 1 cut(s) 35
MflI RGATCY 1 cut(s) 338
MluCI AATT 2 cut(s) 121, 447
MlyI GAGTC 1 cut(s) 316
MmeI TCCRAC 1 cut(s) 206
MnlI CCTC 5 cut(s) 159, 177, 326, 329, 373
MroXI GAANNNNTTC 1 cut(s) 20
MwoI GCNNNNNNNGC 2 cut(s) 245, 416
NdeII GATC 1 cut(s) 338
NheI GCTAGC 1 cut(s) 56
NlaIII CATG 2 cut(s) 117, 302
NlaIV GGNNCC 1 cut(s) 136
NmeAIII GCCGAG 1 cut(s) 265
NspI RCATGY 1 cut(s) 302
PciI ACATGT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 20
PkrI GCNGC 2 cut(s) 55, 418
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 136
PspPI GGNCC 1 cut(s) 135
PstNI CAGNNNCTG 1 cut(s) 422
PsuI RGATCY 1 cut(s) 338
RsaI GTAC 2 cut(s) 39, 147
RsaNI GTAC 2 cut(s) 38, 146
SatI GCNGC 2 cut(s) 54, 417
Sau3AI GATC 1 cut(s) 338
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 316
SetI ASST 9 cut(s) 36, 58, 62, 129, 151, 250, 380, 412, 455
SfaNI GCATC 3 cut(s) 57, 256, 261
SinI GGWCC 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 150, 234
SmoI CTYRAG 2 cut(s) 150, 234
Sse9I AATT 2 cut(s) 121, 447
SsiI CCGC 1 cut(s) 70
SspMI CTAG 3 cut(s) 47, 57, 330
StyI CCWWGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 224, 424
TaiI ACGT 1 cut(s) 36
TaqI TCGA 2 cut(s) 255, 286
TaqII GACCGA 1 cut(s) 369
TasI AATT 2 cut(s) 121, 447
TatI WGTACW 1 cut(s) 37
TscAI CASTG 2 cut(s) 183, 427
TseI GCWGC 2 cut(s) 53, 416
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 2 cut(s) 183, 427
VpaK11BI GGWCC 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 329
XceI RCATGY 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 3 cut(s) 47, 57, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.