Prupe.3G314800_v2.0.a1

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016718
Physical Location & Seq
Forward (+)
27201705 .. 27203003
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G314800.1

Sequence Viewer

Length: 555 bp
ATGGGTAACAGGAACGACGAGGATAAGAAGGGTGGAGGGGCATGCCGTGGTGGCGGCCGTGGGGTTCCGGGGGTGGTAGTAGCACCTTTATTGGTGCTAGTGTTTGCCGGCATTGTGGCGCAGGAAGGAATACTAGTGTTGGCTGCTCAAGAAGTCGACACGTCTTGCCTCAATCGGCTTGCGCCTTGCCTAAACTACCTTAATGGAACCCGTCACCCACCGGACAATTGTTGCGATCCTCTGAAATGGGTGATCAAGTCCAATCCTGAATGCTTGTGTCGTATGATAAGCAACCGAGGCACCAATGAAGCTGAGCAAGCCGGCATCAATGTCAATGAGGCTCAGGAATTGCCAGGAAGATGTGGCCAACGTGTCAACCCACTCGTCTGCCTTTCAAGTAATGGTTCACCTAATGATTCCAAGAACTCCGTTCCAAATTCTGCAAACAGCTTTTCGTTGCTCTTTCGTGGAAGTATGGCGGCCACAACTCTATCGTTGTCTCTTCATCTTATATTTAACTGGCATCAAATACAATATAGTTTCTCGATCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

185

Amino Acids

19.65

Weight (kDa)

7.53

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13900
fragaria_vesca FvH4_6g54420
malus_domestica MD17G1004800.v1.1
prunus_persica Prupe.3G314800_v2.0.a1
pyrus_communis pycom17g00120
rosa_chinensis RchiOBHm_Chr2g0176671
rosa_laevigata RLG00000022434
rosa_multiflora Rmu_co8195448.1_g000001
rosa_samantha Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 299
AccI GTMKAC 1 cut(s) 156
AciI CCGC 2 cut(s) 54, 479
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 3 cut(s) 55, 364, 480
AcsI RAATTY 1 cut(s) 436
AflIII ACRYGT 2 cut(s) 159, 370
AgsI TTSAA 1 cut(s) 396
AhlI ACTAGT 1 cut(s) 133
AjiI CACGTC 1 cut(s) 162
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 2 cut(s) 311, 450
AluI AGCT 2 cut(s) 311, 450
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 1 cut(s) 230
AoxI GGCC 3 cut(s) 55, 364, 480
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 436
AspLEI GCGC 2 cut(s) 121, 184
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 206, 262, 399
BalI TGGCCA 1 cut(s) 366
BanI GGYRCC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 130
BceAI ACGGC 2 cut(s) 30, 42
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 1 cut(s) 504
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 2 cut(s) 98, 134
BglI GCCNNNNNGGC 1 cut(s) 51
BisI GCNGC 3 cut(s) 55, 144, 480
BlpI GCTNAGC 1 cut(s) 312
BlsI GCNGC 3 cut(s) 56, 145, 481
Bme1390I CCNGG 2 cut(s) 69, 354
BmgBI CACGTC 1 cut(s) 162
BmiI GGNNCC 3 cut(s) 66, 208, 301
BmrFI CCNGG 2 cut(s) 69, 354
BmsI GCATC 2 cut(s) 333, 532
Bpu10I CCTNAGC 1 cut(s) 342
Bpu1102I GCTNAGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 69
BsaJI CCNNGG 4 cut(s) 46, 58, 68, 295
BsaWI WCCGGW 1 cut(s) 220
Bse118I RCCGGY 2 cut(s) 107, 320
Bse1I ACTGG 1 cut(s) 524
BseBI CCWGG 1 cut(s) 354
BseDI CCNNGG 4 cut(s) 46, 58, 68, 295
BseMII CTCAG 2 cut(s) 303, 356
BseNI ACTGG 1 cut(s) 524
BseX3I CGGCCG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 58
BshFI GGCC 3 cut(s) 57, 366, 482
BshNI GGYRCC 1 cut(s) 299
BsiEI CGRYCG 1 cut(s) 58
BsiSI CCGG 4 cut(s) 68, 108, 221, 321
BsmAI GTCTC 1 cut(s) 504
BsmI GAATGC 1 cut(s) 275
BsnI GGCC 3 cut(s) 57, 366, 482
Bsp143I GATC 3 cut(s) 235, 252, 546
Bsp1720I GCTNAGC 1 cut(s) 312
BspACI CCGC 2 cut(s) 54, 479
BspANI GGCC 3 cut(s) 57, 366, 482
BspCNI CTCAG 2 cut(s) 304, 355
BspLI GGNNCC 3 cut(s) 66, 208, 301
BspPI GGATC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 299
BsrFI RCCGGY 2 cut(s) 107, 320
BsrI ACTGG 1 cut(s) 524
BssAI RCCGGY 2 cut(s) 107, 320
BssECI CCNNGG 4 cut(s) 46, 58, 68, 295
BssMI GATC 3 cut(s) 235, 252, 546
Bst2UI CCWGG 1 cut(s) 354
Bst6I CTCTTC 1 cut(s) 507
BstC8I GCNNGC 5 cut(s) 43, 109, 180, 318, 322
BstDEI CTNAG 2 cut(s) 312, 342
BstDSI CCRYGG 2 cut(s) 46, 58
BstHHI GCGC 2 cut(s) 121, 184
BstKTI GATC 3 cut(s) 238, 255, 549
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 3 cut(s) 235, 252, 546
BstMCI CGRYCG 1 cut(s) 58
BstMWI GCNNNNNNNGC 3 cut(s) 51, 297, 317
BstNI CCWGG 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 2 cut(s) 67, 352
BstV1I GCAGC 1 cut(s) 130
BstZI CGGCCG 1 cut(s) 55
BsuRI GGCC 3 cut(s) 57, 366, 482
BtgI CCRYGG 2 cut(s) 46, 58
BtrI CACGTC 1 cut(s) 162
Cac8I GCNNGC 5 cut(s) 43, 109, 180, 318, 322
CfoI GCGC 2 cut(s) 121, 184
Cfr10I RCCGGY 2 cut(s) 107, 320
CviAII CATG 1 cut(s) 42
CviJI RGCY 9 cut(s) 57, 143, 178, 311, 320, 341, 366, 450, 482
CviKI_1 RGCY 9 cut(s) 57, 143, 178, 311, 320, 341, 366, 450, 482
DdeI CTNAG 2 cut(s) 312, 342
DpnI GATC 3 cut(s) 237, 254, 548
DpnII GATC 3 cut(s) 235, 252, 546
EaeI YGGCCR 3 cut(s) 55, 364, 480
EagI CGGCCG 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EclXI CGGCCG 1 cut(s) 55
Eco52I CGGCCG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 352
FaeI CATG 1 cut(s) 45
FaiI YATR 5 cut(s) 43, 284, 476, 512, 537
FatI CATG 1 cut(s) 41
FbaI TGATCA 1 cut(s) 252
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 55, 144, 480
Fsp4HI GCNGC 3 cut(s) 55, 144, 480
FspBI CTAG 2 cut(s) 98, 134
GlaI GCGC 2 cut(s) 120, 183
GluI GCNGC 3 cut(s) 55, 144, 480
HaeIII GGCC 3 cut(s) 57, 366, 482
HapII CCGG 4 cut(s) 68, 108, 221, 321
HhaI GCGC 2 cut(s) 121, 184
Hin1II CATG 1 cut(s) 45
Hin6I GCGC 2 cut(s) 119, 182
HinP1I GCGC 2 cut(s) 119, 182
HincII GTYRAC 2 cut(s) 157, 376
HindII GTYRAC 2 cut(s) 157, 376
HinfI GANTC 1 cut(s) 416
HpaII CCGG 4 cut(s) 68, 108, 221, 321
HphI GGTGA 3 cut(s) 206, 262, 399
Hpy166II GTNNAC 3 cut(s) 157, 376, 407
Hpy188I TCNGA 1 cut(s) 243
Hpy188III TCNNGA 4 cut(s) 149, 266, 344, 544
Hpy8I GTNNAC 3 cut(s) 157, 376, 407
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 22, 119
HpyCH4IV ACGT 2 cut(s) 161, 370
HpyCH4V TGCA 1 cut(s) 443
HpyF10VI GCNNNNNNNGC 3 cut(s) 51, 297, 317
HpyF3I CTNAG 2 cut(s) 312, 342
HpySE526I ACGT 2 cut(s) 161, 370
Hsp92II CATG 1 cut(s) 45
HspAI GCGC 2 cut(s) 119, 182
KroI GCCGGC 2 cut(s) 107, 320
KroNI GCCGGC 2 cut(s) 109, 322
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 3 cut(s) 235, 252, 546
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 2 cut(s) 333, 532
MaeI CTAG 2 cut(s) 98, 134
MaeII ACGT 2 cut(s) 161, 370
MaeIII GTNAC 2 cut(s) 5, 212
MalI GATC 3 cut(s) 237, 254, 548
MboI GATC 3 cut(s) 235, 252, 546
MboII GAAGA 2 cut(s) 369, 494
MfeI CAATTG 1 cut(s) 226
MlsI TGGCCA 1 cut(s) 366
MluCI AATT 4 cut(s) 226, 347, 436, 550
MluNI TGGCCA 1 cut(s) 366
MnlI CCTC 6 cut(s) 13, 29, 179, 249, 290, 331
Mox20I TGGCCA 1 cut(s) 366
MroNI GCCGGC 2 cut(s) 107, 320
MscI TGGCCA 1 cut(s) 366
MseI TTAA 3 cut(s) 201, 516, 553
Msp20I TGGCCA 1 cut(s) 366
MspI CCGG 4 cut(s) 68, 108, 221, 321
MspR9I CCNGG 2 cut(s) 69, 354
MunI CAATTG 1 cut(s) 226
Mva1269I GAATGC 1 cut(s) 275
MvaI CCWGG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 51, 297, 317
NaeI GCCGGC 2 cut(s) 109, 322
NciI CCSGG 1 cut(s) 69
NdeII GATC 3 cut(s) 235, 252, 546
NgoMIV GCCGGC 2 cut(s) 107, 320
NlaIII CATG 1 cut(s) 45
NlaIV GGNNCC 3 cut(s) 66, 208, 301
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 45
PaeI GCATGC 1 cut(s) 45
PctI GAATGC 1 cut(s) 275
PdiI GCCGGC 2 cut(s) 109, 322
PfeI GAWTC 1 cut(s) 416
PkrI GCNGC 3 cut(s) 56, 145, 481
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 3 cut(s) 66, 208, 301
SalI GTCGAC 1 cut(s) 155
SaqAI TTAA 3 cut(s) 201, 516, 553
SatI GCNGC 3 cut(s) 55, 144, 480
Sau3AI GATC 3 cut(s) 235, 252, 546
ScrFI CCNGG 2 cut(s) 69, 354
SetI ASST 7 cut(s) 88, 164, 201, 313, 373, 412, 452
SfaNI GCATC 2 cut(s) 333, 532
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
SpeI ACTAGT 1 cut(s) 133
SphI GCATGC 1 cut(s) 45
Sse9I AATT 4 cut(s) 226, 347, 436, 550
SsiI CCGC 2 cut(s) 54, 479
SspMI CTAG 2 cut(s) 98, 134
StyD4I CCNGG 2 cut(s) 67, 352
TaiI ACGT 2 cut(s) 164, 373
TaqI TCGA 2 cut(s) 156, 545
TasI AATT 4 cut(s) 226, 347, 436, 550
TauI GCSGC 2 cut(s) 57, 482
TfiI GAWTC 1 cut(s) 416
Tru1I TTAA 3 cut(s) 201, 516, 553
Tru9I TTAA 3 cut(s) 201, 516, 553
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 321, 494
TspGWI ACGGA 1 cut(s) 418
XapI RAATTY 1 cut(s) 436
XceI RCATGY 1 cut(s) 45
XmiI GTMKAC 1 cut(s) 156
XspI CTAG 2 cut(s) 98, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.