Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016718

Physical Location & Seq

Genomic Coordinates Forward (+)

83287532 .. 83288122

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022434

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGAAATGAAGTCCTGGGCATGCTTTTGTGTTTCTGTTGTAGTGCTACTGTTTGTCAATAATATTAATAATGTTGTGGCGCAGGACACATCATGCCTAAATGAGCTTGCTCCTTGCCTAAACTACCTTAATGGAACCCGACACCCACCCGACGATTGTTGCAATCCTCTGAAGTCGGTGATCAAGTCGAAGCCAAAATGCTTGTGTAGTATGATAAGCAACCGGGGCACCACTAAAGCCGAGCAAGCCGGCATCAATATCACCGAGGCTCAACAATTGCCGGCGAGATGCGGTCAACACGTCAACCCCATATCTTGTCTTTCAAGTAATTCTCCTAAGAAGTCCAACAAGTCAGTTCCGAATTCTGCAAATATGATCTGTTCATTGCCTTCTCGTGCAAGTATGGTGGCCACAGCGTTGTTTCTTCAGATTATATTGATTAGCATCAAATGGTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

154

Amino Acids

16.59

Weight (kDa)

8.89

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	20 - 106	1.1e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 106	8.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13900
fragaria_vesca	FvH4_6g54420
malus_domestica	MD17G1004800.v1.1
prunus_persica	Prupe.3G314800_v2.0.a1
pyrus_communis	pycom17g00120
rosa_chinensis	RchiOBHm_Chr2g0176671
rosa_laevigata	RLG00000022434
rosa_multiflora	Rmu_co8195448.1_g000001
rosa_samantha	Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana	Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	191, 410
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	324
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	14
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	1 cut(s)	458
Alw44I	GTGCAC	1 cut(s)	454
AoxI	GGCC	1 cut(s)	408
ApaLI	GTGCAC	1 cut(s)	454
ApoI	RAATTY	1 cut(s)	361
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	190, 253
BaeGI	GKGCMC	2 cut(s)	230, 458
BalI	TGGCCA	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	458
BciT130I	CCWGG	1 cut(s)	16
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	16, 224
BmgBI	CACGTC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	136, 229
BmrFI	CCNGG	2 cut(s)	16, 224
BmsI	GCATC	3 cut(s)	261, 278, 453
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	443
BsaJI	CCNNGG	3 cut(s)	15, 223, 264
Bse118I	RCCGGY	2 cut(s)	248, 280
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	443
BseBI	CCWGG	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	15, 223, 264
BseJI	GATNNNNATC	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	383
BseSI	GKGCMC	2 cut(s)	230, 458
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	458
BsiSI	CCGG	3 cut(s)	223, 249, 281
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	230, 458
Bsp143I	GATC	2 cut(s)	180, 375
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	410
BspLI	GGNNCC	2 cut(s)	136, 229
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	383
BsrFI	RCCGGY	2 cut(s)	248, 280
BssAI	RCCGGY	2 cut(s)	248, 280
BssECI	CCNNGG	3 cut(s)	15, 223, 264
BssMI	GATC	2 cut(s)	180, 375
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	51
BstC8I	GCNNGC	5 cut(s)	22, 108, 246, 250, 282
BstDEI	CTNAG	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	2 cut(s)	183, 378
BstMBI	GATC	2 cut(s)	180, 375
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 245
BstNI	CCWGG	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	2 cut(s)	14, 222
BstSLI	GKGCMC	2 cut(s)	230, 458
BsuRI	GGCC	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	301
Cac8I	GCNNGC	5 cut(s)	22, 108, 246, 250, 282
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	248, 280
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	3 cut(s)	21, 93, 459
CviJI	RGCY	6 cut(s)	106, 193, 239, 248, 269, 410
CviKI_1	RGCY	6 cut(s)	106, 193, 239, 248, 269, 410
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	182, 377
DpnII	GATC	2 cut(s)	180, 375
EaeI	YGGCCR	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	191, 410
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	24, 96, 462
FaiI	YATR	8 cut(s)	22, 94, 212, 311, 374, 404, 434, 460
FatI	CATG	3 cut(s)	20, 92, 458
FbaI	TGATCA	1 cut(s)	180
GlaI	GCGC	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	3 cut(s)	223, 249, 281
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	3 cut(s)	24, 96, 462
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	296, 304
HindII	GTYRAC	2 cut(s)	296, 304
HpaII	CCGG	3 cut(s)	223, 249, 281
HphI	GGTGA	2 cut(s)	190, 253
Hpy166II	GTNNAC	3 cut(s)	296, 304, 456
Hpy188I	TCNGA	3 cut(s)	171, 360, 429
Hpy8I	GTNNAC	3 cut(s)	296, 304, 456
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	162, 368, 398, 456
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 245
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	24, 96, 462
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	2 cut(s)	248, 280
KroNI	GCCGGC	2 cut(s)	250, 282
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	180, 375
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	5 cut(s)	28, 68, 236, 262, 294
LweI	GCATC	3 cut(s)	261, 278, 453
MaeII	ACGT	1 cut(s)	300
MalI	GATC	2 cut(s)	182, 377
MboI	GATC	2 cut(s)	180, 375
MboII	GAAGA	1 cut(s)	416
MfeI	CAATTG	1 cut(s)	275
MhlI	GDGCHC	2 cut(s)	230, 458
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	3 cut(s)	275, 328, 361
MluNI	TGGCCA	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	2 cut(s)	177, 259
Mox20I	TGGCCA	1 cut(s)	410
MroNI	GCCGGC	2 cut(s)	248, 280
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	66, 129
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	3 cut(s)	223, 249, 281
MspR9I	CCNGG	2 cut(s)	16, 224
MunI	CAATTG	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	225, 245
NaeI	GCCGGC	2 cut(s)	250, 282
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	180, 375
NgoMIV	GCCGGC	2 cut(s)	248, 280
NlaIII	CATG	3 cut(s)	24, 96, 462
NlaIV	GGNNCC	2 cut(s)	136, 229
NmeAIII	GCCGAG	1 cut(s)	265
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PdiI	GCCGGC	2 cut(s)	250, 282
PshBI	ATTAAT	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	14
PspN4I	GGNNCC	2 cut(s)	136, 229
SaqAI	TTAA	2 cut(s)	66, 129
Sau3AI	GATC	2 cut(s)	180, 375
ScrFI	CCNGG	2 cut(s)	16, 224
SduI	GDGCHC	2 cut(s)	230, 458
SetI	ASST	3 cut(s)	108, 129, 303
SfaNI	GCATC	3 cut(s)	261, 278, 453
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	275, 328, 361
SsiI	CCGC	1 cut(s)	291
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	14, 222
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	188
TasI	AATT	3 cut(s)	275, 328, 361
Tru1I	TTAA	2 cut(s)	66, 129
Tru9I	TTAA	2 cut(s)	66, 129
TspDTI	ATGAA	2 cut(s)	23, 372
VneI	GTGCAC	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.