Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016718

Physical Location & Seq

Genomic Coordinates Forward (+)

81756527 .. 81757084

Gene Structure 558 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG649200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAAGATGAAGTCTTGGGCATGCTTTTGTGTTTCTGTTCTAGTGCTACTGTTTGTCAATCATATTAATGATGTTGTGGCGCAGGACACATCATGCCTAAATGAGCTTGCTGCTTGCCTAAGCTACCTTAATGGAACCCGACACCCACCCGACGATTGTTGCAATCCTCTGAAGTCGGTGATCAAGTCGAAGCCAAAATGCTTGTGCAGTATGATAAGCAACCGGGGCACCACTAAAGCCGAGCAAGCCGGCATCAATATCACCGAGGCTCAGCAATTGCCGGCAAGATGCGGTCAACACGTCAACCCCATCTCTTGCCTTTCAAGTAATTCTCCTAAGAAGTCCAACAAGTCAGTTCCGAATTCTGCAAATATCTATTCATTGCCTTCTCGTGCAAGTATGGTGGCCACAGCGTTGTTTCTTCAGATTATATTGATTAGCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

149

Amino Acids

16.11

Weight (kDa)

9.1

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	25 - 106	3.2e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	33 - 106	9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13900
fragaria_vesca	FvH4_6g54420
malus_domestica	MD17G1004800.v1.1
prunus_persica	Prupe.3G314800_v2.0.a1
pyrus_communis	pycom17g00120
rosa_chinensis	RchiOBHm_Chr2g0176671
rosa_laevigata	RLG00000022434
rosa_multiflora	Rmu_co8195448.1_g000001
rosa_samantha	Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana	Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	1 cut(s)	361
AcuI	CTGAAG	2 cut(s)	191, 407
AflIII	ACRYGT	1 cut(s)	298
AgsI	TTSAA	1 cut(s)	324
AjiI	CACGTC	1 cut(s)	301
AluBI	AGCT	2 cut(s)	106, 123
AluI	AGCT	2 cut(s)	106, 123
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	361
AseI	ATTAAT	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	190, 253
BaeGI	GKGCMC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	407
BanI	GGYRCC	1 cut(s)	227
BauI	CACGAG	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	317
BclI	TGATCA	1 cut(s)	180
BcnI	CCSGG	1 cut(s)	224
BfaI	CTAG	1 cut(s)	41
BisI	GCNGC	1 cut(s)	111
BlpI	GCTNAGC	1 cut(s)	270
BlsI	GCNGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	224
BmgBI	CACGTC	1 cut(s)	301
BmiI	GGNNCC	2 cut(s)	136, 229
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	2 cut(s)	261, 278
Bpu10I	CCTNAGC	1 cut(s)	119
Bpu1102I	GCTNAGC	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	223, 264
Bse118I	RCCGGY	2 cut(s)	248, 280
Bse3DI	GCAATG	1 cut(s)	380
Bse8I	GATNNNNATC	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	223, 264
BseJI	GATNNNNATC	1 cut(s)	440
BseMI	GCAATG	1 cut(s)	380
BseMII	CTCAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	230
BseXI	GCAGC	1 cut(s)	97
BsgI	GTGCAG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	407
BshNI	GGYRCC	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	223, 249, 281
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	180
Bsp1720I	GCTNAGC	1 cut(s)	270
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	407
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	136, 229
BspT107I	GGYRCC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	380
BsrFI	RCCGGY	2 cut(s)	248, 280
BssAI	RCCGGY	2 cut(s)	248, 280
BssECI	CCNNGG	2 cut(s)	223, 264
BssMI	GATC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	390
Bst2BI	CACGAG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	51
BstC8I	GCNNGC	6 cut(s)	22, 108, 115, 246, 250, 282
BstDEI	CTNAG	3 cut(s)	119, 270, 336
BstHHI	GCGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	2 cut(s)	225, 245
BstNSI	RCATGY	1 cut(s)	24
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	230
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	407
BtrI	CACGTC	1 cut(s)	301
Cac8I	GCNNGC	6 cut(s)	22, 108, 115, 246, 250, 282
CfoI	GCGC	1 cut(s)	82
Cfr10I	RCCGGY	2 cut(s)	248, 280
CspCI	CAANNNNNGTGG	2 cut(s)	384, 419
CviAII	CATG	2 cut(s)	21, 93
CviJI	RGCY	7 cut(s)	106, 123, 193, 239, 248, 269, 407
CviKI_1	RGCY	7 cut(s)	106, 123, 193, 239, 248, 269, 407
DdeI	CTNAG	3 cut(s)	119, 270, 336
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
EaeI	YGGCCR	1 cut(s)	405
Eco57I	CTGAAG	2 cut(s)	191, 407
EcoRI	GAATTC	1 cut(s)	361
FaeI	CATG	2 cut(s)	24, 96
FaiI	YATR	6 cut(s)	22, 63, 94, 212, 401, 431
FatI	CATG	2 cut(s)	20, 92
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	1 cut(s)	41
GlaI	GCGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	407
HapII	CCGG	3 cut(s)	223, 249, 281
HhaI	GCGC	1 cut(s)	82
Hin1II	CATG	2 cut(s)	24, 96
Hin6I	GCGC	1 cut(s)	80
HinP1I	GCGC	1 cut(s)	80
HincII	GTYRAC	2 cut(s)	296, 304
HindII	GTYRAC	2 cut(s)	296, 304
HpaII	CCGG	3 cut(s)	223, 249, 281
HphI	GGTGA	2 cut(s)	190, 253
Hpy166II	GTNNAC	2 cut(s)	296, 304
Hpy188I	TCNGA	3 cut(s)	171, 360, 426
Hpy8I	GTNNAC	2 cut(s)	296, 304
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	396
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	162, 207, 368, 395
HpyF10VI	GCNNNNNNNGC	2 cut(s)	225, 245
HpyF3I	CTNAG	3 cut(s)	119, 270, 336
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	24, 96
HspAI	GCGC	1 cut(s)	80
KroI	GCCGGC	2 cut(s)	248, 280
KroNI	GCCGGC	2 cut(s)	250, 282
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	4 cut(s)	68, 236, 262, 294
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	261, 278
MaeI	CTAG	1 cut(s)	41
MaeII	ACGT	1 cut(s)	300
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	2 cut(s)	16, 413
MfeI	CAATTG	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	407
MluCI	AATT	3 cut(s)	275, 328, 361
MluNI	TGGCCA	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	2 cut(s)	177, 259
Mox20I	TGGCCA	1 cut(s)	407
MroNI	GCCGGC	2 cut(s)	248, 280
MscI	TGGCCA	1 cut(s)	407
MseI	TTAA	2 cut(s)	66, 129
MslI	CAYNNNNRTG	1 cut(s)	66
Msp20I	TGGCCA	1 cut(s)	407
MspI	CCGG	3 cut(s)	223, 249, 281
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	275
MwoI	GCNNNNNNNGC	2 cut(s)	225, 245
NaeI	GCCGGC	2 cut(s)	250, 282
NciI	CCSGG	1 cut(s)	224
NdeII	GATC	1 cut(s)	180
NgoMIV	GCCGGC	2 cut(s)	248, 280
NlaIII	CATG	2 cut(s)	24, 96
NlaIV	GGNNCC	2 cut(s)	136, 229
NmeAIII	GCCGAG	1 cut(s)	265
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PdiI	GCCGGC	2 cut(s)	250, 282
PkrI	GCNGC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	66
PspN4I	GGNNCC	2 cut(s)	136, 229
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	2 cut(s)	66, 129
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	1 cut(s)	180
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	230
SetI	ASST	4 cut(s)	108, 125, 129, 303
SfaNI	GCATC	2 cut(s)	261, 278
SmiMI	CAYNNNNRTG	1 cut(s)	66
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	275, 328, 361
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	41
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	1 cut(s)	188
TasI	AATT	3 cut(s)	275, 328, 361
Tru1I	TTAA	2 cut(s)	66, 129
Tru9I	TTAA	2 cut(s)	66, 129
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	17, 23, 369
VspI	ATTAAT	1 cut(s)	66
XapI	RAATTY	1 cut(s)	361
XceI	RCATGY	1 cut(s)	24
XspI	CTAG	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.