Rw0G015670

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00723
OG0016718
Physical Location & Seq
Forward (+)
22899 .. 23456
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015670.1

Sequence Viewer

Length: 450 bp
ATGAAGATGAAGTCTTGGGCATGCTTTTGTGTTTCTGTTCTAGTGCTACTGTTTGTCAATCATATTAATGATGTTGTGGCGCAGGACACATCATGCCTAAATGAGCTTGCTGCTTGCCTAAGCTACCTTAATGGAACCCGACACCCACCCGACGATTGTTGCAATCCTCTGAAGTCGGTGATCAAGTCGAAGCCAAAATGCTTGTGCAGTATGATAAGCAACCGGGGCACCACTAAAGCCGAGCAAGCCGGCATCAATATCACCGAGGCTCAGCAATTGCCGGCAAGATGCGGTCAACACGTCAACCCCATCTCTTGCCTTTCAAGTAATTCTCCTAAGAAGTCCAACAAGTCAGTTCCGAATTCTGCAAATATCTATTCATTGCCTTCTCGTGCAAGTATGGTGGCCACAGCGTTGTTTCTTCAGATTATATTGATTAGCATCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

149

Amino Acids

16.11

Weight (kDa)

9.1

Isoelectric Point (pI)

52.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 25 - 106 3.2e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 33 - 106 9e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13900
fragaria_vesca FvH4_6g54420
malus_domestica MD17G1004800.v1.1
prunus_persica Prupe.3G314800_v2.0.a1
pyrus_communis pycom17g00120
rosa_chinensis RchiOBHm_Chr2g0176671
rosa_laevigata RLG00000022434
rosa_multiflora Rmu_co8195448.1_g000001
rosa_samantha Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AciI CCGC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 405
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 191, 407
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 1 cut(s) 324
AjiI CACGTC 1 cut(s) 301
AluBI AGCT 2 cut(s) 106, 123
AluI AGCT 2 cut(s) 106, 123
AoxI GGCC 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 361
AseI ATTAAT 1 cut(s) 66
AspLEI GCGC 1 cut(s) 82
AsuC2I CCSGG 1 cut(s) 224
AsuHPI GGTGA 2 cut(s) 190, 253
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 407
BanI GGYRCC 1 cut(s) 227
BauI CACGAG 1 cut(s) 390
BbvI GCAGC 1 cut(s) 97
BccI CCATC 1 cut(s) 317
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 224
BfaI CTAG 1 cut(s) 41
BisI GCNGC 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 136, 229
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 2 cut(s) 261, 278
Bpu10I CCTNAGC 1 cut(s) 119
Bpu1102I GCTNAGC 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 224
BsaBI GATNNNNATC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 223, 264
Bse118I RCCGGY 2 cut(s) 248, 280
Bse3DI GCAATG 1 cut(s) 380
Bse8I GATNNNNATC 1 cut(s) 440
BseDI CCNNGG 2 cut(s) 223, 264
BseJI GATNNNNATC 1 cut(s) 440
BseMI GCAATG 1 cut(s) 380
BseMII CTCAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 407
BshNI GGYRCC 1 cut(s) 227
BsiSI CCGG 3 cut(s) 223, 249, 281
BsnI GGCC 1 cut(s) 407
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 270
BspACI CCGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 407
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 136, 229
BspT107I GGYRCC 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 380
BsrFI RCCGGY 2 cut(s) 248, 280
BssAI RCCGGY 2 cut(s) 248, 280
BssECI CCNNGG 2 cut(s) 223, 264
BssMI GATC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 390
Bst4CI ACNGT 1 cut(s) 51
BstC8I GCNNGC 6 cut(s) 22, 108, 115, 246, 250, 282
BstDEI CTNAG 3 cut(s) 119, 270, 336
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstMWI GCNNNNNNNGC 2 cut(s) 225, 245
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 407
BtrI CACGTC 1 cut(s) 301
Cac8I GCNNGC 6 cut(s) 22, 108, 115, 246, 250, 282
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 2 cut(s) 248, 280
CspCI CAANNNNNGTGG 2 cut(s) 384, 419
CviAII CATG 2 cut(s) 21, 93
CviJI RGCY 7 cut(s) 106, 123, 193, 239, 248, 269, 407
CviKI_1 RGCY 7 cut(s) 106, 123, 193, 239, 248, 269, 407
DdeI CTNAG 3 cut(s) 119, 270, 336
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
EaeI YGGCCR 1 cut(s) 405
Eco57I CTGAAG 2 cut(s) 191, 407
EcoRI GAATTC 1 cut(s) 361
FaeI CATG 2 cut(s) 24, 96
FaiI YATR 6 cut(s) 22, 63, 94, 212, 401, 431
FatI CATG 2 cut(s) 20, 92
FbaI TGATCA 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 407
HapII CCGG 3 cut(s) 223, 249, 281
HhaI GCGC 1 cut(s) 82
Hin1II CATG 2 cut(s) 24, 96
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 2 cut(s) 296, 304
HindII GTYRAC 2 cut(s) 296, 304
HpaII CCGG 3 cut(s) 223, 249, 281
HphI GGTGA 2 cut(s) 190, 253
Hpy166II GTNNAC 2 cut(s) 296, 304
Hpy188I TCNGA 3 cut(s) 171, 360, 426
Hpy8I GTNNAC 2 cut(s) 296, 304
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 4 cut(s) 162, 207, 368, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 245
HpyF3I CTNAG 3 cut(s) 119, 270, 336
HpySE526I ACGT 1 cut(s) 300
Hsp92II CATG 2 cut(s) 24, 96
HspAI GCGC 1 cut(s) 80
KroI GCCGGC 2 cut(s) 248, 280
KroNI GCCGGC 2 cut(s) 250, 282
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 4 cut(s) 68, 236, 262, 294
Lsp1109I GCAGC 1 cut(s) 97
LweI GCATC 2 cut(s) 261, 278
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 300
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 16, 413
MfeI CAATTG 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 407
MluCI AATT 3 cut(s) 275, 328, 361
MluNI TGGCCA 1 cut(s) 407
MmeI TCCRAC 1 cut(s) 369
MnlI CCTC 2 cut(s) 177, 259
Mox20I TGGCCA 1 cut(s) 407
MroNI GCCGGC 2 cut(s) 248, 280
MscI TGGCCA 1 cut(s) 407
MseI TTAA 2 cut(s) 66, 129
MslI CAYNNNNRTG 1 cut(s) 66
Msp20I TGGCCA 1 cut(s) 407
MspI CCGG 3 cut(s) 223, 249, 281
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 275
MwoI GCNNNNNNNGC 2 cut(s) 225, 245
NaeI GCCGGC 2 cut(s) 250, 282
NciI CCSGG 1 cut(s) 224
NdeII GATC 1 cut(s) 180
NgoMIV GCCGGC 2 cut(s) 248, 280
NlaIII CATG 2 cut(s) 24, 96
NlaIV GGNNCC 2 cut(s) 136, 229
NmeAIII GCCGAG 1 cut(s) 265
NspI RCATGY 1 cut(s) 24
PaeI GCATGC 1 cut(s) 24
PdiI GCCGGC 2 cut(s) 250, 282
PkrI GCNGC 1 cut(s) 112
PshBI ATTAAT 1 cut(s) 66
PspN4I GGNNCC 2 cut(s) 136, 229
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 2 cut(s) 66, 129
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 230
SetI ASST 4 cut(s) 108, 125, 129, 303
SfaNI GCATC 2 cut(s) 261, 278
SmiMI CAYNNNNRTG 1 cut(s) 66
SphI GCATGC 1 cut(s) 24
Sse9I AATT 3 cut(s) 275, 328, 361
SsiI CCGC 1 cut(s) 291
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 51
TaiI ACGT 1 cut(s) 303
TaqI TCGA 1 cut(s) 188
TasI AATT 3 cut(s) 275, 328, 361
Tru1I TTAA 2 cut(s) 66, 129
Tru9I TTAA 2 cut(s) 66, 129
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 17, 23, 369
VspI ATTAAT 1 cut(s) 66
XapI RAATTY 1 cut(s) 361
XceI RCATGY 1 cut(s) 24
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.