MD17G1004800.v1.1

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016718
Physical Location & Seq
Reverse (-)
372794 .. 373624
831 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1004800.v1.1.491

Sequence Viewer

Length: 498 bp
ATGGCTAAGTACCAAAACAATGCACTAGTAATACTAGCTTTTGCCGGCATCATGGCGCAGGAAGGAATGTTAATGGTGGCTGCTGCTCAAGGAGACACGTCTTGCCTCAGTCAGCTTGCTCCTTGCCTCAACTACCTGAATGGAACCCGTCACCCGCCCGACAATTGTTGCGATCCTCTCAAATCGATGATAAAGTCTAATCCACAATGTTTGTGTAGTATGATCAGCAACCGGGCCACCAATCAAGCTGAGCAAGCCGGCATCAATATCAACGAGGCTCAGCAGTTGCCTGGAAGATGTGGTGAACGTGTCAACCCGCTCGCCTGCCTTTCAAGTTCTCCTCCTAGTCGTGCTCCTAGTAATTCCAGGAACTCAGTTCCAAATTCTGCAAACGATGCCTTTTCGTTGCTCTCTCGTGGAAGCCTGGCGGCCACAGCTCTATCGTCGTCTCTTCAGATTCTTCTATTTATTGGTATCAAATACAACGCATTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

166

Amino Acids

17.43

Weight (kDa)

8.47

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 19 - 109 4.9e-16 Probable lipid transfer
Tryp_alpha_amyl PF00234 36 - 106 2.3e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13900
fragaria_vesca FvH4_6g54420
malus_domestica MD17G1004800.v1.1
prunus_persica Prupe.3G314800_v2.0.a1
pyrus_communis pycom17g00120
rosa_chinensis RchiOBHm_Chr2g0176671
rosa_laevigata RLG00000022434
rosa_multiflora Rmu_co8195448.1_g000001
rosa_samantha Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 3 cut(s) 155, 317, 428
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 1 cut(s) 429
AcsI RAATTY 1 cut(s) 382
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 11
AflIII ACRYGT 2 cut(s) 96, 307
AgsI TTSAA 1 cut(s) 333
AhlI ACTAGT 1 cut(s) 25
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 3 cut(s) 289, 365, 423
AluBI AGCT 4 cut(s) 38, 115, 248, 437
AluI AGCT 4 cut(s) 38, 115, 248, 437
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 87, 453
AlwI GGATC 1 cut(s) 167
AoxI GGCC 2 cut(s) 234, 429
ApeKI GCWGC 2 cut(s) 80, 83
ApoI RAATTY 1 cut(s) 382
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 143, 314
BauI CACGAG 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 2 cut(s) 67, 70
BciT130I CCWGG 3 cut(s) 291, 367, 425
BclI TGATCA 1 cut(s) 222
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 87, 453
BcuI ACTAGT 1 cut(s) 25
BfaI CTAG 5 cut(s) 26, 35, 345, 357, 496
BisI GCNGC 3 cut(s) 81, 84, 429
BlpI GCTNAGC 2 cut(s) 249, 279
BlsI GCNGC 3 cut(s) 82, 85, 430
Bme1390I CCNGG 4 cut(s) 233, 291, 367, 425
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 4 cut(s) 233, 291, 367, 425
BmsI GCATC 3 cut(s) 57, 270, 385
Bpu1102I GCTNAGC 2 cut(s) 249, 279
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 185
Bse118I RCCGGY 2 cut(s) 44, 257
BseBI CCWGG 3 cut(s) 291, 367, 425
BseCI ATCGAT 1 cut(s) 185
BseMII CTCAG 4 cut(s) 121, 240, 293, 387
BseRI GAGGAG 1 cut(s) 330
BseXI GCAGC 2 cut(s) 67, 70
BshFI GGCC 2 cut(s) 236, 431
BshVI ATCGAT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 355
BsiSI CCGG 3 cut(s) 45, 232, 258
BsmAI GTCTC 2 cut(s) 87, 453
BsmBI CGTCTC 1 cut(s) 453
BsnI GGCC 2 cut(s) 236, 431
Bsp1286I GDGCHC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 172, 222
Bsp1720I GCTNAGC 2 cut(s) 249, 279
BspACI CCGC 3 cut(s) 155, 317, 428
BspANI GGCC 2 cut(s) 236, 431
BspCNI CTCAG 4 cut(s) 120, 241, 292, 386
BspDI ATCGAT 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 44, 257
BssAI RCCGGY 2 cut(s) 44, 257
BssMI GATC 2 cut(s) 172, 222
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst2UI CCWGG 3 cut(s) 291, 367, 425
Bst6I CTCTTC 1 cut(s) 456
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 6 cut(s) 46, 117, 255, 259, 321, 325
BstDEI CTNAG 5 cut(s) 6, 107, 249, 279, 373
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 2 cut(s) 175, 225
BstMAI GTCTC 2 cut(s) 87, 453
BstMBI GATC 2 cut(s) 172, 222
BstMWI GCNNNNNNNGC 3 cut(s) 254, 395, 434
BstNI CCWGG 3 cut(s) 291, 367, 425
BstSCI CCNGG 4 cut(s) 231, 289, 365, 423
BstV1I GCAGC 2 cut(s) 67, 70
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 2 cut(s) 236, 431
BsuTUI ATCGAT 1 cut(s) 185
BtrI CACGTC 1 cut(s) 99
Cac8I GCNNGC 6 cut(s) 46, 117, 255, 259, 321, 325
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 2 cut(s) 44, 257
Cfr13I GGNCC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 1 cut(s) 52
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 5 cut(s) 6, 107, 249, 279, 373
DpnI GATC 2 cut(s) 174, 224
DpnII GATC 2 cut(s) 172, 222
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 456
EarI CTCTTC 1 cut(s) 456
Eco57I CTGAAG 1 cut(s) 437
EcoRII CCWGG 3 cut(s) 289, 365, 423
Esp3I CGTCTC 1 cut(s) 453
FaeI CATG 1 cut(s) 55
FaiI YATR 2 cut(s) 53, 221
FatI CATG 1 cut(s) 51
FauI CCCGC 2 cut(s) 162, 324
FbaI TGATCA 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 81, 84, 429
Fsp4HI GCNGC 3 cut(s) 81, 84, 429
FspBI CTAG 5 cut(s) 26, 35, 345, 357, 496
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 81, 84, 429
HaeIII GGCC 2 cut(s) 236, 431
HapII CCGG 3 cut(s) 45, 232, 258
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 55
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HinfI GANTC 1 cut(s) 457
HpaII CCGG 3 cut(s) 45, 232, 258
HphI GGTGA 2 cut(s) 143, 314
Hpy166II GTNNAC 2 cut(s) 305, 313
Hpy188I TCNGA 1 cut(s) 456
Hpy8I GTNNAC 2 cut(s) 305, 313
Hpy99I CGWCG 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 2 cut(s) 98, 307
HpyCH4V TGCA 2 cut(s) 23, 389
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 395, 434
HpyF3I CTNAG 5 cut(s) 6, 107, 249, 279, 373
HpySE526I ACGT 2 cut(s) 98, 307
Hsp92II CATG 1 cut(s) 55
HspAI GCGC 1 cut(s) 56
KroI GCCGGC 2 cut(s) 44, 257
KroNI GCCGGC 2 cut(s) 46, 259
Ksp22I TGATCA 1 cut(s) 222
Kzo9I GATC 2 cut(s) 172, 222
LmnI GCTCC 2 cut(s) 124, 358
Lsp1109I GCAGC 2 cut(s) 67, 70
LweI GCATC 3 cut(s) 57, 270, 385
MaeI CTAG 5 cut(s) 26, 35, 345, 357, 496
MaeII ACGT 2 cut(s) 98, 307
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 174, 224
MbiI CCGCTC 1 cut(s) 319
MboI GATC 2 cut(s) 172, 222
MboII GAAGA 3 cut(s) 306, 443, 452
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 3 cut(s) 163, 361, 382
MnlI CCTC 5 cut(s) 116, 137, 186, 268, 351
MroNI GCCGGC 2 cut(s) 44, 257
MseI TTAA 1 cut(s) 71
MspI CCGG 3 cut(s) 45, 232, 258
MspR9I CCNGG 4 cut(s) 233, 291, 367, 425
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 3 cut(s) 291, 367, 425
MwoI GCNNNNNNNGC 3 cut(s) 254, 395, 434
NaeI GCCGGC 2 cut(s) 46, 259
NciI CCSGG 1 cut(s) 233
NdeII GATC 2 cut(s) 172, 222
NgoMIV GCCGGC 2 cut(s) 44, 257
NlaIII CATG 1 cut(s) 55
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 149
PdiI GCCGGC 2 cut(s) 46, 259
PfeI GAWTC 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 365
PkrI GCNGC 3 cut(s) 82, 85, 430
Psp6I CCWGG 3 cut(s) 289, 365, 423
PspGI CCWGG 3 cut(s) 289, 365, 423
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 3 cut(s) 81, 84, 429
Sau3AI GATC 2 cut(s) 172, 222
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 4 cut(s) 233, 291, 367, 425
SduI GDGCHC 1 cut(s) 355
SetI ASST 7 cut(s) 40, 101, 117, 138, 250, 310, 439
SfaNI GCATC 3 cut(s) 57, 270, 385
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 25
Sse9I AATT 3 cut(s) 163, 361, 382
SsiI CCGC 3 cut(s) 155, 317, 428
SspMI CTAG 5 cut(s) 26, 35, 345, 357, 496
StyD4I CCNGG 4 cut(s) 231, 289, 365, 423
TaiI ACGT 2 cut(s) 101, 310
TaqI TCGA 1 cut(s) 185
TasI AATT 3 cut(s) 163, 361, 382
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 80, 83
Tsp45I GTSAC 1 cut(s) 149
XapI RAATTY 1 cut(s) 382
XspI CTAG 5 cut(s) 26, 35, 345, 357, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.