Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016718

Physical Location & Seq

Genomic Coordinates Forward (+)

88381897 .. 88382822

Gene Structure 926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54367

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAAGTCTTGGGCATGCTTTTGTGTTTCTGTTCTAGTGCTACTGTTTGTCAATCATATTAATGATGTTGTGGCGCAGGACACATCATGCCTAAATGAGCTTGCTGCTTGCCTAAGCTACCTTAATGGAACCCGACACCCACCCGACGATTGTTGCAATCCTCTGAAGTCGGTGATCAAGTCGAAGCCAAAATGCTTGTGCAGTATGATAAGCAACCGGGGCACCACTAAAGCCGAGCAAGCAGGCATCAATATCACCGAGGCTCAGCAATTGCCGGCAAGATGCGGTCAACACGTCAACCCCATCTCTTGCCTTTCAAGTAAGCCTCCCTTGATCTCCCTAGTTAGCCTCTCCGTTTATCCCATTCAATTGTTTTTATTTGAATCAATACGTACTGTTATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

135

Amino Acids

14.74

Weight (kDa)

8.36

Isoelectric Point (pI)

39.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	23 - 104	2.2e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	31 - 104	6.9e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13900
fragaria_vesca	FvH4_6g54420
malus_domestica	MD17G1004800.v1.1
prunus_persica	Prupe.3G314800_v2.0.a1
pyrus_communis	pycom17g00120
rosa_chinensis	RchiOBHm_Chr2g0176671
rosa_laevigata	RLG00000022434
rosa_multiflora	Rmu_co8195448.1_g000001
rosa_samantha	Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana	Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	394
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	3 cut(s)	318, 368, 383
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	2 cut(s)	100, 117
AluI	AGCT	2 cut(s)	100, 117
ApeKI	GCWGC	1 cut(s)	104
AseI	ATTAAT	2 cut(s)	60, 402
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	184, 247
BaeGI	GKGCMC	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	2 cut(s)	35, 341
BisI	GCNGC	1 cut(s)	105
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	130, 223
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	255, 272
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	1 cut(s)	392
BsaJI	CCNNGG	2 cut(s)	217, 258
Bse118I	RCCGGY	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	217, 258
BseMII	CTCAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	217, 275
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	2 cut(s)	174, 333
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	130, 223
BspT107I	GGYRCC	1 cut(s)	221
BsrFI	RCCGGY	1 cut(s)	274
BssAI	RCCGGY	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	217, 258
BssMI	GATC	2 cut(s)	174, 333
Bst4CI	ACNGT	2 cut(s)	45, 397
BstBAI	YACGTR	1 cut(s)	392
BstC8I	GCNNGC	6 cut(s)	16, 102, 109, 240, 244, 276
BstDEI	CTNAG	2 cut(s)	113, 264
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	2 cut(s)	177, 336
BstMBI	GATC	2 cut(s)	174, 333
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 239
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	224
BstSNI	TACGTA	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	295
Cac8I	GCNNGC	6 cut(s)	16, 102, 109, 240, 244, 276
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	393
CviAII	CATG	2 cut(s)	15, 87
CviJI	RGCY	7 cut(s)	100, 117, 187, 233, 263, 325, 348
CviKI_1	RGCY	7 cut(s)	100, 117, 187, 233, 263, 325, 348
CviQI	GTAC	1 cut(s)	393
DdeI	CTNAG	2 cut(s)	113, 264
DpnI	GATC	2 cut(s)	176, 335
DpnII	GATC	2 cut(s)	174, 333
Eco105I	TACGTA	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	185
FaeI	CATG	2 cut(s)	18, 90
FaiI	YATR	4 cut(s)	16, 57, 88, 206
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FatI	CATG	2 cut(s)	14, 86
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	35, 341
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	105
HapII	CCGG	2 cut(s)	217, 275
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	18, 90
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	2 cut(s)	290, 298
HindII	GTYRAC	2 cut(s)	290, 298
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	2 cut(s)	217, 275
HphI	GGTGA	2 cut(s)	184, 247
Hpy166II	GTNNAC	2 cut(s)	290, 298
Hpy188I	TCNGA	1 cut(s)	165
Hpy8I	GTNNAC	2 cut(s)	290, 298
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	45, 397
HpyCH4IV	ACGT	2 cut(s)	294, 391
HpyCH4V	TGCA	2 cut(s)	156, 201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 239
HpyF3I	CTNAG	2 cut(s)	113, 264
HpySE526I	ACGT	2 cut(s)	294, 391
Hsp92II	CATG	2 cut(s)	18, 90
HspAI	GCGC	1 cut(s)	74
KroI	GCCGGC	1 cut(s)	274
KroNI	GCCGGC	1 cut(s)	276
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	2 cut(s)	174, 333
LpnPI	CCDG	4 cut(s)	62, 228, 230, 288
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	2 cut(s)	255, 272
MaeI	CTAG	2 cut(s)	35, 341
MaeII	ACGT	2 cut(s)	294, 391
MalI	GATC	2 cut(s)	176, 335
MboI	GATC	2 cut(s)	174, 333
MfeI	CAATTG	2 cut(s)	269, 368
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	3 cut(s)	269, 368, 403
MnlI	CCTC	4 cut(s)	171, 253, 336, 359
MroNI	GCCGGC	1 cut(s)	274
MseI	TTAA	4 cut(s)	60, 123, 402, 406
MslI	CAYNNNNRTG	1 cut(s)	60
MspI	CCGG	2 cut(s)	217, 275
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	2 cut(s)	269, 368
MwoI	GCNNNNNNNGC	2 cut(s)	219, 239
NaeI	GCCGGC	1 cut(s)	276
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	2 cut(s)	174, 333
NgoMIV	GCCGGC	1 cut(s)	274
NlaIII	CATG	2 cut(s)	18, 90
NlaIV	GGNNCC	2 cut(s)	130, 223
NmeAIII	GCCGAG	1 cut(s)	259
NspI	RCATGY	1 cut(s)	18
PacI	TTAATTAA	1 cut(s)	406
PaeI	GCATGC	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	392
PshBI	ATTAAT	2 cut(s)	60, 402
PspN4I	GGNNCC	2 cut(s)	130, 223
RsaI	GTAC	1 cut(s)	394
RsaNI	GTAC	1 cut(s)	393
RseI	CAYNNNNRTG	1 cut(s)	60
SaqAI	TTAA	4 cut(s)	60, 123, 402, 406
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	2 cut(s)	174, 333
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	5 cut(s)	102, 119, 123, 297, 394
SfaNI	GCATC	2 cut(s)	255, 272
SmiMI	CAYNNNNRTG	1 cut(s)	60
SnaBI	TACGTA	1 cut(s)	392
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	3 cut(s)	269, 368, 403
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	2 cut(s)	35, 341
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	45, 397
TaiI	ACGT	2 cut(s)	297, 394
TaqI	TCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	269, 368, 403
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	4 cut(s)	60, 123, 402, 406
Tru9I	TTAA	4 cut(s)	60, 123, 402, 406
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	343
VspI	ATTAAT	2 cut(s)	60, 402
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	2 cut(s)	35, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.