Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0016718

Physical Location & Seq

Genomic Coordinates Forward (+)

89358964 .. 89359515

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG685900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGAAGTCTTGGGCATGCTTTTGTGTTTCTGTTCTAGTGCTACTGTTTGTCAATAATATTAATGATGTTGTGGCGCAGGACACATCATGCCTAAATGAGCTTGCTGCTTGCCTAAGCTACCTTAATGGAACCCGACACCCACCCGACGATTGTTGCAATCCTCTGAAGTCGGTGATCAAGTCGAAGCCAAAATGCTTGTGCAGTATGATAAGCAACCGGGGCACCACTAAAGCCGAGCAAGCCGGCATCAATATCACCGAGGCTCAGCAATTGCCGGCAAGATGCGGTCAACACGTCAACCCCATCTCTTGCCTTTCAAGTAATTCTCCTAAGAAGTCCAACAAGTCAGTTCCGAATTCTGCAAATATCTATTCATTGCCTTCTCGTGCAAGTATGGTGGCCACAGCGTTGTTTCTTCAGATTATATTGATTAGCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

147

Amino Acids

15.83

Weight (kDa)

8.99

Isoelectric Point (pI)

50.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	23 - 104	3.8e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	31 - 104	1.1e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13900
fragaria_vesca	FvH4_6g54420
malus_domestica	MD17G1004800.v1.1
prunus_persica	Prupe.3G314800_v2.0.a1
pyrus_communis	pycom17g00120
rosa_chinensis	RchiOBHm_Chr2g0176671
rosa_laevigata	RLG00000022434
rosa_multiflora	Rmu_co8195448.1_g000001
rosa_samantha	Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana	Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	221
AciI	CCGC	1 cut(s)	285
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	2 cut(s)	185, 401
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	318
AjiI	CACGTC	1 cut(s)	295
AluBI	AGCT	2 cut(s)	100, 117
AluI	AGCT	2 cut(s)	100, 117
AoxI	GGCC	1 cut(s)	399
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	1 cut(s)	355
AseI	ATTAAT	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	76
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	184, 247
BaeGI	GKGCMC	1 cut(s)	224
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	221
BauI	CACGAG	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	311
BclI	TGATCA	1 cut(s)	174
BcnI	CCSGG	1 cut(s)	218
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	1 cut(s)	105
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	106
Bme1390I	CCNGG	1 cut(s)	218
BmgBI	CACGTC	1 cut(s)	295
BmiI	GGNNCC	2 cut(s)	130, 223
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	2 cut(s)	255, 272
Bpu10I	CCTNAGC	1 cut(s)	113
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	217, 258
Bse118I	RCCGGY	2 cut(s)	242, 274
Bse3DI	GCAATG	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	434
BseDI	CCNNGG	2 cut(s)	217, 258
BseJI	GATNNNNATC	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	374
BseMII	CTCAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	401
BshNI	GGYRCC	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	217, 243, 275
BsnI	GGCC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	1 cut(s)	174
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	401
BspCNI	CTCAG	1 cut(s)	277
BspLI	GGNNCC	2 cut(s)	130, 223
BspT107I	GGYRCC	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	242, 274
BssAI	RCCGGY	2 cut(s)	242, 274
BssECI	CCNNGG	2 cut(s)	217, 258
BssMI	GATC	1 cut(s)	174
BssSI	CACGAG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	384
Bst4CI	ACNGT	1 cut(s)	45
BstC8I	GCNNGC	6 cut(s)	16, 102, 109, 240, 244, 276
BstDEI	CTNAG	3 cut(s)	113, 264, 330
BstHHI	GCGC	1 cut(s)	76
BstKTI	GATC	1 cut(s)	177
BstMBI	GATC	1 cut(s)	174
BstMWI	GCNNNNNNNGC	2 cut(s)	219, 239
BstNSI	RCATGY	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	224
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	401
BtrI	CACGTC	1 cut(s)	295
Cac8I	GCNNGC	6 cut(s)	16, 102, 109, 240, 244, 276
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	242, 274
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	2 cut(s)	15, 87
CviJI	RGCY	7 cut(s)	100, 117, 187, 233, 242, 263, 401
CviKI_1	RGCY	7 cut(s)	100, 117, 187, 233, 242, 263, 401
DdeI	CTNAG	3 cut(s)	113, 264, 330
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	399
Eco57I	CTGAAG	2 cut(s)	185, 401
EcoRI	GAATTC	1 cut(s)	355
FaeI	CATG	2 cut(s)	18, 90
FaiI	YATR	5 cut(s)	16, 88, 206, 395, 425
FatI	CATG	2 cut(s)	14, 86
FbaI	TGATCA	1 cut(s)	174
Fnu4HI	GCNGC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	401
HapII	CCGG	3 cut(s)	217, 243, 275
HhaI	GCGC	1 cut(s)	76
Hin1II	CATG	2 cut(s)	18, 90
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HincII	GTYRAC	2 cut(s)	290, 298
HindII	GTYRAC	2 cut(s)	290, 298
HpaII	CCGG	3 cut(s)	217, 243, 275
HphI	GGTGA	2 cut(s)	184, 247
Hpy166II	GTNNAC	2 cut(s)	290, 298
Hpy188I	TCNGA	3 cut(s)	165, 354, 420
Hpy8I	GTNNAC	2 cut(s)	290, 298
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	390
HpyCH4III	ACNGT	1 cut(s)	45
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	4 cut(s)	156, 201, 362, 389
HpyF10VI	GCNNNNNNNGC	2 cut(s)	219, 239
HpyF3I	CTNAG	3 cut(s)	113, 264, 330
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	18, 90
HspAI	GCGC	1 cut(s)	74
KroI	GCCGGC	2 cut(s)	242, 274
KroNI	GCCGGC	2 cut(s)	244, 276
Ksp22I	TGATCA	1 cut(s)	174
Kzo9I	GATC	1 cut(s)	174
LpnPI	CCDG	4 cut(s)	62, 230, 256, 288
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	2 cut(s)	255, 272
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	294
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	1 cut(s)	407
MfeI	CAATTG	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	224
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	3 cut(s)	269, 322, 355
MluNI	TGGCCA	1 cut(s)	401
MmeI	TCCRAC	1 cut(s)	363
MnlI	CCTC	2 cut(s)	171, 253
Mox20I	TGGCCA	1 cut(s)	401
MroNI	GCCGGC	2 cut(s)	242, 274
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	2 cut(s)	60, 123
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	3 cut(s)	217, 243, 275
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	269
MwoI	GCNNNNNNNGC	2 cut(s)	219, 239
NaeI	GCCGGC	2 cut(s)	244, 276
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	174
NgoMIV	GCCGGC	2 cut(s)	242, 274
NlaIII	CATG	2 cut(s)	18, 90
NlaIV	GGNNCC	2 cut(s)	130, 223
NmeAIII	GCCGAG	1 cut(s)	259
NspI	RCATGY	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	18
PdiI	GCCGGC	2 cut(s)	244, 276
PkrI	GCNGC	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	60
PspN4I	GGNNCC	2 cut(s)	130, 223
SaqAI	TTAA	2 cut(s)	60, 123
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	174
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	224
SetI	ASST	4 cut(s)	102, 119, 123, 297
SfaNI	GCATC	2 cut(s)	255, 272
SphI	GCATGC	1 cut(s)	18
Sse9I	AATT	3 cut(s)	269, 322, 355
SsiI	CCGC	1 cut(s)	285
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	45
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	182
TasI	AATT	3 cut(s)	269, 322, 355
Tru1I	TTAA	2 cut(s)	60, 123
Tru9I	TTAA	2 cut(s)	60, 123
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	17, 363
VspI	ATTAAT	1 cut(s)	60
XapI	RAATTY	1 cut(s)	355
XceI	RCATGY	1 cut(s)	18
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.