Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016718

Physical Location & Seq

Genomic Coordinates Forward (+)

39734206 .. 39735100

Gene Structure 895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54420.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCATGCACAACTGCATGCCATATATAGCTATAGCTATAGCAAACCGAAAAACCATCAACAGCAACACAGCAAGAAAGAAACCATGGAAATGAAGCCTTGGACGTGCTTTGGTGTTTGTCTAGTAGTGCTGCTGCTATTTGTCGATAATCCTATAAGTAATGTGGTATCGCAGGACATATCATGCCTAAATAAGCTTGCTCCTTGCCTAAACTACCTTAATGGAACCCGCAACCCTCCAGACGATTGTTGCGATCCTCTGAAGTCGGTGATCAAGTCGAACCCAAAATGCTTGTGTAGTATGATAAGCAACCGGGGCACAACTAAAGCCGAGCAAGCCGGCATCAATATCACCGAGGCTCAGCAATTGCCGGGACGATGCGGCCAACACGTCAACCCCATCGCTTGCCTTTCAAGTAATTCTCCTAAGAAATCCAACAACTCAGTTCCGAACTCTGCAAATATCTATTCATTGCCTTCCCGCGCAAGTATGGTAGCCACTGCTTTGTCAACCATGTTTCAGCTTGTATTGATTAGCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

182

Amino Acids

19.83

Weight (kDa)

9.04

Isoelectric Point (pI)

40.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	44 - 136	8.7e-16	Probable lipid transfer
Tryp_alpha_amyl	PF00234	63 - 136	7.4e-10	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13900
fragaria_vesca	FvH4_6g54420
malus_domestica	MD17G1004800.v1.1
prunus_persica	Prupe.3G314800_v2.0.a1
pyrus_communis	pycom17g00120
rosa_chinensis	RchiOBHm_Chr2g0176671
rosa_laevigata	RLG00000022434
rosa_multiflora	Rmu_co8195448.1_g000001
rosa_samantha	Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana	Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	483
AciI	CCGC	3 cut(s)	229, 381, 481
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	414
AjiI	CACGTC	2 cut(s)	105, 391
AluBI	AGCT	4 cut(s)	30, 36, 196, 523
AluI	AGCT	4 cut(s)	30, 36, 196, 523
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	2 cut(s)	130, 133
AspLEI	GCGC	1 cut(s)	485
AsuC2I	CCSGG	2 cut(s)	314, 372
AsuHPI	GGTGA	2 cut(s)	280, 343
BaeGI	GKGCMC	1 cut(s)	320
BbvI	GCAGC	2 cut(s)	117, 120
BccI	CCATC	2 cut(s)	63, 407
BclI	TGATCA	1 cut(s)	270
BcnI	CCSGG	2 cut(s)	314, 372
BfaI	CTAG	1 cut(s)	122
BfmI	CTRYAG	2 cut(s)	31, 37
BisI	GCNGC	3 cut(s)	131, 134, 382
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	3 cut(s)	132, 135, 383
Bme1390I	CCNGG	2 cut(s)	314, 372
BmgBI	CACGTC	2 cut(s)	105, 391
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	2 cut(s)	314, 372
BmsI	GCATC	2 cut(s)	351, 368
BpmI	CTGGAG	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	314, 372
BsaBI	GATNNNNATC	1 cut(s)	536
BsaJI	CCNNGG	4 cut(s)	84, 98, 313, 354
Bse118I	RCCGGY	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	536
BseDI	CCNNGG	4 cut(s)	84, 98, 313, 354
BseJI	GATNNNNATC	1 cut(s)	536
BseMI	GCAATG	1 cut(s)	470
BseMII	CTCAG	2 cut(s)	374, 456
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	117, 120
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	384
BsiSI	CCGG	3 cut(s)	313, 339, 371
BslFI	GGGAC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	384
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	253, 270
Bsp1720I	GCTNAGC	1 cut(s)	360
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	3 cut(s)	229, 381, 481
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	2 cut(s)	373, 455
BspFNI	CGCG	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	470
BsrFI	RCCGGY	1 cut(s)	338
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	4 cut(s)	84, 98, 313, 354
BssMI	GATC	2 cut(s)	253, 270
BssT1I	CCWWGG	2 cut(s)	84, 98
BstC8I	GCNNGC	6 cut(s)	6, 18, 198, 336, 340, 406
BstDEI	CTNAG	3 cut(s)	360, 426, 442
BstDSI	CCRYGG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	2 cut(s)	256, 273
BstMBI	GATC	2 cut(s)	253, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	315, 335
BstNSI	RCATGY	2 cut(s)	8, 20
BstSCI	CCNGG	2 cut(s)	312, 370
BstSFI	CTRYAG	2 cut(s)	31, 37
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	2 cut(s)	117, 120
BsuRI	GGCC	1 cut(s)	384
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	385
BtrI	CACGTC	2 cut(s)	105, 391
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	1 cut(s)	498
Cac8I	GCNNGC	6 cut(s)	6, 18, 198, 336, 340, 406
CfoI	GCGC	1 cut(s)	485
Cfr10I	RCCGGY	1 cut(s)	338
CviAII	CATG	5 cut(s)	5, 17, 85, 183, 514
DdeI	CTNAG	3 cut(s)	360, 426, 442
DpnI	GATC	2 cut(s)	255, 272
DpnII	GATC	2 cut(s)	253, 270
EaeI	YGGCCR	1 cut(s)	382
Eco130I	CCWWGG	2 cut(s)	84, 98
Eco57I	CTGAAG	1 cut(s)	281
EcoT14I	CCWWGG	2 cut(s)	84, 98
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	84, 98
FaeI	CATG	5 cut(s)	8, 20, 88, 186, 517
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	5 cut(s)	4, 16, 84, 182, 513
FauI	CCCGC	2 cut(s)	236, 488
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	3 cut(s)	131, 134, 382
Fsp4HI	GCNGC	3 cut(s)	131, 134, 382
FspBI	CTAG	1 cut(s)	122
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	3 cut(s)	131, 134, 382
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	384
HapII	CCGG	3 cut(s)	313, 339, 371
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	5 cut(s)	8, 20, 88, 186, 517
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	2 cut(s)	394, 510
HindII	GTYRAC	2 cut(s)	394, 510
HindIII	AAGCTT	1 cut(s)	194
HpaII	CCGG	3 cut(s)	313, 339, 371
HphI	GGTGA	2 cut(s)	280, 343
Hpy166II	GTNNAC	2 cut(s)	394, 510
Hpy188I	TCNGA	2 cut(s)	261, 450
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	2 cut(s)	394, 510
HpyAV	CCTTC	1 cut(s)	486
HpyCH4IV	ACGT	2 cut(s)	104, 390
HpyCH4V	TGCA	4 cut(s)	4, 8, 16, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	315, 335
HpyF3I	CTNAG	3 cut(s)	360, 426, 442
HpySE526I	ACGT	2 cut(s)	104, 390
Hsp92II	CATG	5 cut(s)	8, 20, 88, 186, 517
HspAI	GCGC	1 cut(s)	483
KroI	GCCGGC	1 cut(s)	338
KroNI	GCCGGC	1 cut(s)	340
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	253, 270
LmnI	GCTCC	1 cut(s)	205
LpnPI	CCDG	5 cut(s)	158, 252, 326, 352, 384
Lsp1109I	GCAGC	2 cut(s)	117, 120
LweI	GCATC	2 cut(s)	351, 368
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	2 cut(s)	104, 390
MalI	GATC	2 cut(s)	255, 272
MboI	GATC	2 cut(s)	253, 270
MfeI	CAATTG	1 cut(s)	365
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	2 cut(s)	365, 418
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	3 cut(s)	246, 267, 349
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	1 cut(s)	338
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	89
MspI	CCGG	3 cut(s)	313, 339, 371
MspR9I	CCNGG	2 cut(s)	314, 372
MunI	CAATTG	1 cut(s)	365
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	315, 335
NaeI	GCCGGC	1 cut(s)	340
NciI	CCSGG	2 cut(s)	314, 372
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	2 cut(s)	253, 270
NgoMIV	GCCGGC	1 cut(s)	338
NlaIII	CATG	5 cut(s)	8, 20, 88, 186, 517
NlaIV	GGNNCC	1 cut(s)	226
NmeAIII	GCCGAG	1 cut(s)	355
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	8, 20
PaeI	GCATGC	2 cut(s)	8, 20
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	132, 135, 383
PspN4I	GGNNCC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	89
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	3 cut(s)	131, 134, 382
Sau3AI	GATC	2 cut(s)	253, 270
ScrFI	CCNGG	2 cut(s)	314, 372
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	7 cut(s)	32, 38, 107, 198, 219, 393, 525
SfaNI	GCATC	2 cut(s)	351, 368
SfcI	CTRYAG	2 cut(s)	31, 37
SmiMI	CAYNNNNRTG	1 cut(s)	89
SphI	GCATGC	2 cut(s)	8, 20
Sse9I	AATT	2 cut(s)	365, 418
SsiI	CCGC	3 cut(s)	229, 381, 481
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	2 cut(s)	312, 370
StyI	CCWWGG	2 cut(s)	84, 98
TaiI	ACGT	2 cut(s)	107, 393
TaqI	TCGA	2 cut(s)	144, 278
TasI	AATT	2 cut(s)	365, 418
TauI	GCSGC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	505
TseI	GCWGC	2 cut(s)	130, 133
TspDTI	ATGAA	2 cut(s)	107, 459
TspRI	CASTG	1 cut(s)	505
XceI	RCATGY	2 cut(s)	8, 20
XspI	CTAG	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.