Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0016718

Physical Location & Seq

Genomic Coordinates Forward (+)

82776310 .. 82776870

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G055380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAAGATGATGAAGTCTTGGGCATGCTTTTATGTTTCTGTTCTAGTGCTACTGTTTGTCAATAATATTAATGATGTTGTGGCGCAGGACACATCATGCCTAAATGAGCTTGCTGCTTGCCTAAGCTACCTTAATGGAACCCGACACCCACCCGACGATTGTTGCAATCCTCTGAAGTCGGTGATCAAGTCGAAGCCAAAATGCTTGTGCAGTATGATAAGCAACCGGGGCACCACTAAAGCCGAGCAAGCCGGCATCAATATCACCGAGGCTCAGCAATTGCCGGCAAGATGCGGTCAACACGTCAACCCCATCTCTTGCCTTTCAAGTAATTCTCCTAAGAAGTCCAACAAGTCAGTTCCGAATTCTGCAAATATCTATTCATTGCCTTCTCGTGCAAGTATGGTGGCCACAGCGTTGTTTCTTCAGATTATATTGATTATTATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

150

Amino Acids

16.3

Weight (kDa)

9.15

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	26 - 107	1.9e-15	Probable lipid transfer
Tryp_alpha_amyl	PF00234	34 - 107	1.2e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016718)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13900
fragaria_vesca	FvH4_6g54420
malus_domestica	MD17G1004800.v1.1
prunus_persica	Prupe.3G314800_v2.0.a1
pyrus_communis	pycom17g00120
rosa_chinensis	RchiOBHm_Chr2g0176671
rosa_laevigata	RLG00000022434
rosa_multiflora	Rmu_co8195448.1_g000001
rosa_samantha	Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana	Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AciI	CCGC	1 cut(s)	294
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	2 cut(s)	194, 410
AflIII	ACRYGT	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	327
AjiI	CACGTC	1 cut(s)	304
AluBI	AGCT	2 cut(s)	109, 126
AluI	AGCT	2 cut(s)	109, 126
AoxI	GGCC	1 cut(s)	408
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	364
AseI	ATTAAT	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	193, 256
BaeGI	GKGCMC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	393
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	320
BclI	TGATCA	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	227
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	1 cut(s)	114
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	227
BmgBI	CACGTC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	139, 232
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	264, 281
Bpu10I	CCTNAGC	1 cut(s)	122
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	443
BsaJI	CCNNGG	2 cut(s)	226, 267
Bse118I	RCCGGY	2 cut(s)	251, 283
Bse3DI	GCAATG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	226, 267
BseJI	GATNNNNATC	1 cut(s)	443
BseMI	GCAATG	1 cut(s)	383
BseMII	CTCAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	100
BsgI	GTGCAG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	410
BshNI	GGYRCC	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	226, 252, 284
BsnI	GGCC	1 cut(s)	410
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	294
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	2 cut(s)	139, 232
BspT107I	GGYRCC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	383
BsrFI	RCCGGY	2 cut(s)	251, 283
BssAI	RCCGGY	2 cut(s)	251, 283
BssECI	CCNNGG	2 cut(s)	226, 267
BssMI	GATC	1 cut(s)	183
BssSI	CACGAG	1 cut(s)	393
Bst2BI	CACGAG	1 cut(s)	393
Bst4CI	ACNGT	1 cut(s)	54
BstC8I	GCNNGC	6 cut(s)	25, 111, 118, 249, 253, 285
BstDEI	CTNAG	3 cut(s)	122, 273, 339
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	1 cut(s)	186
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	228, 248
BstNSI	RCATGY	1 cut(s)	27
BstSCI	CCNGG	1 cut(s)	225
BstSLI	GKGCMC	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	304
Cac8I	GCNNGC	6 cut(s)	25, 111, 118, 249, 253, 285
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	251, 283
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	2 cut(s)	24, 96
CviJI	RGCY	7 cut(s)	109, 126, 196, 242, 251, 272, 410
CviKI_1	RGCY	7 cut(s)	109, 126, 196, 242, 251, 272, 410
DdeI	CTNAG	3 cut(s)	122, 273, 339
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	408
Eco57I	CTGAAG	2 cut(s)	194, 410
EcoRI	GAATTC	1 cut(s)	364
FaeI	CATG	2 cut(s)	27, 99
FaiI	YATR	6 cut(s)	25, 33, 97, 215, 404, 434
FatI	CATG	2 cut(s)	23, 95
FbaI	TGATCA	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	114
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	410
HapII	CCGG	3 cut(s)	226, 252, 284
HhaI	GCGC	1 cut(s)	85
Hin1II	CATG	2 cut(s)	27, 99
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HincII	GTYRAC	2 cut(s)	299, 307
HindII	GTYRAC	2 cut(s)	299, 307
HpaII	CCGG	3 cut(s)	226, 252, 284
HphI	GGTGA	2 cut(s)	193, 256
Hpy166II	GTNNAC	2 cut(s)	299, 307
Hpy188I	TCNGA	3 cut(s)	174, 363, 429
Hpy8I	GTNNAC	2 cut(s)	299, 307
Hpy99I	CGWCG	1 cut(s)	158
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	4 cut(s)	165, 210, 371, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	228, 248
HpyF3I	CTNAG	3 cut(s)	122, 273, 339
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	27, 99
HspAI	GCGC	1 cut(s)	83
KroI	GCCGGC	2 cut(s)	251, 283
KroNI	GCCGGC	2 cut(s)	253, 285
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	183
LpnPI	CCDG	4 cut(s)	71, 239, 265, 297
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	264, 281
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	303
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	2 cut(s)	16, 416
MfeI	CAATTG	1 cut(s)	278
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	410
MluCI	AATT	3 cut(s)	278, 331, 364
MluNI	TGGCCA	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	2 cut(s)	180, 262
Mox20I	TGGCCA	1 cut(s)	410
MroNI	GCCGGC	2 cut(s)	251, 283
MscI	TGGCCA	1 cut(s)	410
MseI	TTAA	2 cut(s)	69, 132
Msp20I	TGGCCA	1 cut(s)	410
MspI	CCGG	3 cut(s)	226, 252, 284
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	228, 248
NaeI	GCCGGC	2 cut(s)	253, 285
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	1 cut(s)	183
NgoMIV	GCCGGC	2 cut(s)	251, 283
NlaIII	CATG	2 cut(s)	27, 99
NlaIV	GGNNCC	2 cut(s)	139, 232
NmeAIII	GCCGAG	1 cut(s)	268
NspI	RCATGY	1 cut(s)	27
PaeI	GCATGC	1 cut(s)	27
PdiI	GCCGGC	2 cut(s)	253, 285
PkrI	GCNGC	1 cut(s)	115
PshBI	ATTAAT	1 cut(s)	69
PspN4I	GGNNCC	2 cut(s)	139, 232
SaqAI	TTAA	2 cut(s)	69, 132
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	1 cut(s)	183
ScrFI	CCNGG	1 cut(s)	227
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	4 cut(s)	111, 128, 132, 306
SfaNI	GCATC	2 cut(s)	264, 281
SphI	GCATGC	1 cut(s)	27
Sse9I	AATT	3 cut(s)	278, 331, 364
SsiI	CCGC	1 cut(s)	294
SspI	AATATT	1 cut(s)	67
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	54
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	191
TasI	AATT	3 cut(s)	278, 331, 364
Tru1I	TTAA	2 cut(s)	69, 132
Tru9I	TTAA	2 cut(s)	69, 132
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	3 cut(s)	17, 26, 372
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	27
XspI	CTAG	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.