pycom17g00120

Belongs to the plant LTP family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0016718
Physical Location & Seq
Reverse (-)
91633 .. 92282
650 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00120.2

Sequence Viewer

Length: 501 bp
ATGGCCAAGTACCAAAACAATGCACTGGTAATACTAGTGTTTGCCGGCATTATGGCGCAGGAAGGAATGTTAATGGTGGCTGCTGCTCAAGGAGACACGTCTTGCCTCAGTCAGCTTGCTCCTTGCCTCAACTACCTGAATGGAACCCGTCACCCACCCGACAATTGTTGCGATCCTCTCAAATCGATGATCAAGTCTAATCCACAATGTTTGTGTAGTATGATCAGCAACCGGGCCACCAATCAAGCTGAGCAAGCCGGCATCAATATCAACGAGGCTCAGCAGTTGCCGGGAAGATGTGGTGAACGTGTCAACCCGCTCGCCTGCCTTTCAACAGGTTCTCCTCCTAGTCGTGCTCCTAGTAATTCCAGGAACTCAGTTCCAAATTCTGTAAACGATGCCTTTTCGTTGCTCTCTCGTGGAAGCGTGGCGGCCACAGCTCTATCGTTGTCTCTTCAGATAATTCTATTTATTGGCATCAAATACAACGCATTATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020 GO:0031224 GO:0031225 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

167

Amino Acids

17.57

Weight (kDa)

8.47

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016718)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G13900
fragaria_vesca FvH4_6g54420
malus_domestica MD17G1004800.v1.1
prunus_persica Prupe.3G314800_v2.0.a1
pyrus_communis pycom17g00120
rosa_chinensis RchiOBHm_Chr2g0176671
rosa_laevigata RLG00000022434
rosa_multiflora Rmu_co8195448.1_g000001
rosa_samantha Rh2AG674800 Rh2BG685900 Rh2CG649200 Rh2DG700100
rosa_wichuraiana Rw0G015670 Rw2G055380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 2 cut(s) 317, 431
AclWI GGATC 1 cut(s) 167
AcoI YGGCCR 2 cut(s) 3, 432
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 440
AfaI GTAC 1 cut(s) 11
AflIII ACRYGT 2 cut(s) 96, 307
AgsI TTSAA 1 cut(s) 333
AhlI ACTAGT 1 cut(s) 34
AjiI CACGTC 1 cut(s) 99
AjnI CCWGG 1 cut(s) 368
AluBI AGCT 3 cut(s) 115, 248, 440
AluI AGCT 3 cut(s) 115, 248, 440
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 2 cut(s) 87, 456
AlwI GGATC 1 cut(s) 167
AoxI GGCC 3 cut(s) 3, 234, 432
ApeKI GCWGC 2 cut(s) 80, 83
ApoI RAATTY 1 cut(s) 385
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 234
AsuC2I CCSGG 2 cut(s) 233, 291
AsuHPI GGTGA 2 cut(s) 143, 314
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 2 cut(s) 67, 70
BciT130I CCWGG 1 cut(s) 370
BclI TGATCA 2 cut(s) 189, 222
BcnI CCSGG 2 cut(s) 233, 291
BcoDI GTCTC 2 cut(s) 87, 456
BcuI ACTAGT 1 cut(s) 34
BfaI CTAG 4 cut(s) 35, 348, 360, 499
BisI GCNGC 3 cut(s) 81, 84, 432
BlpI GCTNAGC 2 cut(s) 249, 279
BlsI GCNGC 3 cut(s) 82, 85, 433
Bme1390I CCNGG 3 cut(s) 233, 291, 370
BmgBI CACGTC 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 3 cut(s) 233, 291, 370
BmsI GCATC 3 cut(s) 270, 388, 486
Bpu1102I GCTNAGC 2 cut(s) 249, 279
BpuEI CTTGAG 1 cut(s) 72
BpuMI CCSGG 2 cut(s) 233, 291
Bsa29I ATCGAT 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 325, 355
Bse118I RCCGGY 2 cut(s) 44, 257
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 370
BseCI ATCGAT 1 cut(s) 185
BseMII CTCAG 4 cut(s) 121, 240, 293, 390
BseNI ACTGG 1 cut(s) 30
BseRI GAGGAG 1 cut(s) 333
BseXI GCAGC 2 cut(s) 67, 70
BshFI GGCC 3 cut(s) 5, 236, 434
BshVI ATCGAT 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 4 cut(s) 45, 232, 258, 290
BsmAI GTCTC 2 cut(s) 87, 456
BsnI GGCC 3 cut(s) 5, 236, 434
Bsp1286I GDGCHC 1 cut(s) 358
Bsp143I GATC 3 cut(s) 172, 189, 222
Bsp1720I GCTNAGC 2 cut(s) 249, 279
BspACI CCGC 2 cut(s) 317, 431
BspANI GGCC 3 cut(s) 5, 236, 434
BspCNI CTCAG 4 cut(s) 120, 241, 292, 389
BspDI ATCGAT 1 cut(s) 185
BspLI GGNNCC 1 cut(s) 145
BspPI GGATC 1 cut(s) 167
BsrBI CCGCTC 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 44, 257
BsrI ACTGG 1 cut(s) 30
BssAI RCCGGY 2 cut(s) 44, 257
BssMI GATC 3 cut(s) 172, 189, 222
BssSI CACGAG 1 cut(s) 417
Bst2BI CACGAG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 459
BstC8I GCNNGC 6 cut(s) 46, 117, 255, 259, 321, 325
BstDEI CTNAG 4 cut(s) 107, 249, 279, 376
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 3 cut(s) 175, 192, 225
BstMAI GTCTC 2 cut(s) 87, 456
BstMBI GATC 3 cut(s) 172, 189, 222
BstMWI GCNNNNNNNGC 2 cut(s) 254, 437
BstNI CCWGG 1 cut(s) 370
BstSCI CCNGG 3 cut(s) 231, 289, 368
BstV1I GCAGC 2 cut(s) 67, 70
Bsu15I ATCGAT 1 cut(s) 185
BsuRI GGCC 3 cut(s) 5, 236, 434
BsuTUI ATCGAT 1 cut(s) 185
BtrI CACGTC 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 6 cut(s) 46, 117, 255, 259, 321, 325
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 2 cut(s) 44, 257
Cfr13I GGNCC 1 cut(s) 234
ClaI ATCGAT 1 cut(s) 185
Csp6I GTAC 1 cut(s) 10
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviJI RGCY 9 cut(s) 5, 80, 115, 236, 248, 257, 278, 434, 440
CviKI_1 RGCY 9 cut(s) 5, 80, 115, 236, 248, 257, 278, 434, 440
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 4 cut(s) 107, 249, 279, 376
DpnI GATC 3 cut(s) 174, 191, 224
DpnII GATC 3 cut(s) 172, 189, 222
EaeI YGGCCR 2 cut(s) 3, 432
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco57I CTGAAG 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 368
FaiI YATR 2 cut(s) 53, 221
FauI CCCGC 1 cut(s) 324
FbaI TGATCA 2 cut(s) 189, 222
Fnu4HI GCNGC 3 cut(s) 81, 84, 432
Fsp4HI GCNGC 3 cut(s) 81, 84, 432
FspBI CTAG 4 cut(s) 35, 348, 360, 499
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 81, 84, 432
HaeIII GGCC 3 cut(s) 5, 236, 434
HapII CCGG 4 cut(s) 45, 232, 258, 290
HhaI GCGC 1 cut(s) 58
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HincII GTYRAC 1 cut(s) 313
HindII GTYRAC 1 cut(s) 313
HpaII CCGG 4 cut(s) 45, 232, 258, 290
HphI GGTGA 2 cut(s) 143, 314
Hpy166II GTNNAC 3 cut(s) 305, 313, 394
Hpy188I TCNGA 1 cut(s) 459
Hpy8I GTNNAC 3 cut(s) 305, 313, 394
HpyAV CCTTC 1 cut(s) 56
HpyCH4IV ACGT 2 cut(s) 98, 307
HpyCH4V TGCA 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 2 cut(s) 254, 437
HpyF3I CTNAG 4 cut(s) 107, 249, 279, 376
HpySE526I ACGT 2 cut(s) 98, 307
HspAI GCGC 1 cut(s) 56
KroI GCCGGC 2 cut(s) 44, 257
KroNI GCCGGC 2 cut(s) 46, 259
Ksp22I TGATCA 2 cut(s) 189, 222
Kzo9I GATC 3 cut(s) 172, 189, 222
LmnI GCTCC 2 cut(s) 124, 361
Lsp1109I GCAGC 2 cut(s) 67, 70
LweI GCATC 3 cut(s) 270, 388, 486
MaeI CTAG 4 cut(s) 35, 348, 360, 499
MaeII ACGT 2 cut(s) 98, 307
MaeIII GTNAC 1 cut(s) 149
MalI GATC 3 cut(s) 174, 191, 224
MbiI CCGCTC 1 cut(s) 319
MboI GATC 3 cut(s) 172, 189, 222
MboII GAAGA 2 cut(s) 306, 446
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 4 cut(s) 163, 364, 385, 462
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 116, 137, 186, 268, 354
Mox20I TGGCCA 1 cut(s) 5
MroNI GCCGGC 2 cut(s) 44, 257
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 4 cut(s) 45, 232, 258, 290
MspR9I CCNGG 3 cut(s) 233, 291, 370
MunI CAATTG 1 cut(s) 163
MvaI CCWGG 1 cut(s) 370
MwoI GCNNNNNNNGC 2 cut(s) 254, 437
NaeI GCCGGC 2 cut(s) 46, 259
NciI CCSGG 2 cut(s) 233, 291
NdeII GATC 3 cut(s) 172, 189, 222
NgoMIV GCCGGC 2 cut(s) 44, 257
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 149
PdiI GCCGGC 2 cut(s) 46, 259
PfoI TCCNGGA 1 cut(s) 368
PkrI GCNGC 3 cut(s) 82, 85, 433
Psp6I CCWGG 1 cut(s) 368
PspGI CCWGG 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 3 cut(s) 81, 84, 432
Sau3AI GATC 3 cut(s) 172, 189, 222
Sau96I GGNCC 1 cut(s) 234
ScrFI CCNGG 3 cut(s) 233, 291, 370
SduI GDGCHC 1 cut(s) 358
SetI ASST 7 cut(s) 101, 117, 138, 250, 310, 340, 442
SfaNI GCATC 3 cut(s) 270, 388, 486
SmlI CTYRAG 1 cut(s) 87
SmoI CTYRAG 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 34
Sse9I AATT 4 cut(s) 163, 364, 385, 462
SsiI CCGC 2 cut(s) 317, 431
SspMI CTAG 4 cut(s) 35, 348, 360, 499
StyD4I CCNGG 3 cut(s) 231, 289, 368
TaiI ACGT 2 cut(s) 101, 310
TaqI TCGA 1 cut(s) 185
TasI AATT 4 cut(s) 163, 364, 385, 462
TauI GCSGC 1 cut(s) 434
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 1 cut(s) 30
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 2 cut(s) 80, 83
Tsp45I GTSAC 1 cut(s) 149
TspRI CASTG 1 cut(s) 30
XapI RAATTY 1 cut(s) 385
XspI CTAG 4 cut(s) 35, 348, 360, 499
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.