AT5G14000
NAC Family

NAC domain containing protein 84

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007675
Physical Location & Seq
Forward (+)
4517694 .. 4519426
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14000.2

Sequence Viewer

Length: 621 bp
ATGGAGGTGGAGAAGAGGATTGTAGTGAATGGAGGAATGAAATTGCCAATAGGATACAGATTTCACCCAACCGAGCAAGAGCTTATCCTTCATTACTTGCTCCCAAAGGCCTTTGCTTCTCCTTTGCCTTCCTCCATCATCCCTGTCTTTGACCTCTTCTTCTCTCATCCTCTTAGTTTCCCAGGGGACCAAAAGGAGAAGCAGAGGTACTTCTTTTGCAAGAAGAGAGAAGTGTCAAGTAATGAGCATAGAATCAAGATTTCCTCTGGTGATGGTTATTGGAAACCTATTGGTAAAGAGAGACCAATCATTGCCTGTGGTAAAACATTTGGGATTAGAAGAACACTTGCTTTCTATGAAACAAACAAGTCTTCTTCTTATTGCAACAAAACTAGATGGAGCATGACAGAGTATTGTCTTGCGGGATTTGCGTCGGCTAAGGTGTCTGGAGAATGGGCAGTGTACAATGTTTATGAGAGGAAAGGCTCAAAAGGAAGAAAACAGAGGAAATCAAGAGAGGGAGATGATGAAGAATTGAGATGCATCGACCATTTTACGGTTGGGTCAAATCATGAAACCGGTCCACCACCGCCTTCTCCTCCTACCTCAGCTGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

206

Amino Acids

23.49

Weight (kDa)

9.22

Isoelectric Point (pI)

45.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 140 1.3e-30 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 422, 590
AfaI GTAC 2 cut(s) 209, 464
AfiI CCNNNNNNNGG 1 cut(s) 556
AgeI ACCGGT 1 cut(s) 578
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 2 cut(s) 82, 611
AluI AGCT 2 cut(s) 82, 611
Alw26I GTCTC 1 cut(s) 295
AoxI GGCC 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 578
AspS9I GGNCC 2 cut(s) 187, 581
AsuHPI GGTGA 2 cut(s) 56, 281
AvaII GGWCC 2 cut(s) 187, 581
BarI GAAGNNNNNNTAC 2 cut(s) 191, 223
BbsI GAAGAC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 607
BccI CCATC 3 cut(s) 143, 266, 390
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 393
BfuI GTATCC 1 cut(s) 47
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 2 cut(s) 187, 581
BmgT120I GGNCC 2 cut(s) 187, 581
BmiI GGNNCC 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 2 cut(s) 530, 552
BpiI GAAGAC 1 cut(s) 363
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 2 cut(s) 438, 607
BsaI GGTCTC 1 cut(s) 295
BsaJI CCNNGG 2 cut(s) 181, 182
BsaWI WCCGGW 1 cut(s) 578
Bsc4I CCNNNNNNNGG 1 cut(s) 556
Bse118I RCCGGY 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 181, 182
BseGI GGATG 2 cut(s) 138, 166
BseLI CCNNNNNNNGG 1 cut(s) 556
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 621
BseRI GAGGAG 1 cut(s) 588
BshFI GGCC 1 cut(s) 110
BshTI ACCGGT 1 cut(s) 578
BsiSI CCGG 1 cut(s) 579
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 556
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 1 cut(s) 200
BsnI GGCC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 295
Bsp1407I TGTACA 1 cut(s) 462
BspACI CCGC 2 cut(s) 422, 590
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 620
BspHI TCATGA 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 578
BsrGI TGTACA 1 cut(s) 462
BssAI RCCGGY 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 181, 182
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 3 cut(s) 8, 161, 218
BstAUI TGTACA 1 cut(s) 462
BstDEI CTNAG 3 cut(s) 173, 438, 607
BstF5I GGATG 2 cut(s) 138, 166
BstMAI GTCTC 1 cut(s) 295
BstMWI GCNNNNNNNGC 1 cut(s) 428
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 363
BsuI GTATCC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 138, 166
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 1 cut(s) 465
CciI TCATGA 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 578
Cfr13I GGNCC 2 cut(s) 187, 581
CseI GACGC 1 cut(s) 420
Csp6I GTAC 2 cut(s) 208, 463
CspAI ACCGGT 1 cut(s) 578
CviAII CATG 2 cut(s) 403, 572
CviJI RGCY 5 cut(s) 82, 110, 437, 486, 611
CviKI_1 RGCY 5 cut(s) 82, 110, 437, 486, 611
CviQI GTAC 2 cut(s) 208, 463
DdeI CTNAG 3 cut(s) 173, 438, 607
Eam1104I CTCTTC 3 cut(s) 8, 161, 218
EarI CTCTTC 3 cut(s) 8, 161, 218
Eco147I AGGCCT 1 cut(s) 110
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 2 cut(s) 187, 581
EcoRII CCWGG 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 545
FaeI CATG 2 cut(s) 406, 575
FaiI YATR 5 cut(s) 249, 357, 404, 474, 573
FaqI GGGAC 1 cut(s) 200
FatI CATG 2 cut(s) 402, 571
FauI CCCGC 1 cut(s) 415
FokI GGATG 2 cut(s) 125, 153
FspBI CTAG 1 cut(s) 393
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 1 cut(s) 110
HapII CCGG 1 cut(s) 579
HgaI GACGC 1 cut(s) 420
Hin1II CATG 2 cut(s) 406, 575
HinfI GANTC 1 cut(s) 252
HpaII CCGG 1 cut(s) 579
HphI GGTGA 2 cut(s) 56, 281
Hpy166II GTNNAC 2 cut(s) 463, 584
Hpy188III TCNNGA 4 cut(s) 256, 447, 513, 572
Hpy8I GTNNAC 2 cut(s) 463, 584
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 3 cut(s) 98, 138, 603
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 219, 384, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 428
HpyF3I CTNAG 3 cut(s) 173, 438, 607
Hsp92II CATG 2 cut(s) 406, 575
LmnI GCTCC 2 cut(s) 105, 399
LpnPI CCDG 7 cut(s) 156, 168, 195, 252, 328, 432, 592
LweI GCATC 2 cut(s) 530, 552
MaeI CTAG 1 cut(s) 393
MboII GAAGA 9 cut(s) 25, 148, 151, 235, 351, 363, 366, 507, 542
MluCI AATT 2 cut(s) 41, 533
Mph1103I ATGCAT 1 cut(s) 545
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 1 cut(s) 579
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 428
NlaIII CATG 2 cut(s) 406, 575
NlaIV GGNNCC 1 cut(s) 188
NsiI ATGCAT 1 cut(s) 545
PagI TCATGA 1 cut(s) 571
PasI CCCWGGG 1 cut(s) 182
PceI AGGCCT 1 cut(s) 110
PfeI GAWTC 1 cut(s) 252
PinAI ACCGGT 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 188
PspPI GGNCC 2 cut(s) 187, 581
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 2 cut(s) 209, 464
RsaNI GTAC 2 cut(s) 208, 463
Sau96I GGNCC 2 cut(s) 187, 581
ScrFI CCNGG 1 cut(s) 183
SetI ASST 8 cut(s) 9, 84, 156, 209, 289, 444, 608, 613
SfaNI GCATC 2 cut(s) 530, 552
SinI GGWCC 2 cut(s) 187, 581
Sse9I AATT 2 cut(s) 41, 533
SseBI AGGCCT 1 cut(s) 110
SsiI CCGC 2 cut(s) 422, 590
SspMI CTAG 1 cut(s) 393
StuI AGGCCT 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 1 cut(s) 559
TaqI TCGA 1 cut(s) 546
TasI AATT 2 cut(s) 41, 533
TatI WGTACW 1 cut(s) 462
TfiI GAWTC 1 cut(s) 252
TscAI CASTG 1 cut(s) 465
TspDTI ATGAA 5 cut(s) 53, 80, 372, 543, 588
TspRI CASTG 1 cut(s) 465
VpaK11BI GGWCC 2 cut(s) 187, 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XspI CTAG 1 cut(s) 393
Zsp2I ATGCAT 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.