Rorug06G0496800
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007675
Physical Location & Seq
Forward (+)
61334805 .. 61336738
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0496800.1

Sequence Viewer

Length: 804 bp
ATGACGGACAGAGTCTACCCGTCTTCCAAGGTGGCCACAAACGGCGCCGCGAACGGCGCCACCGCGACCACCACCGCCGCCAACCCCACAGCCACCAAGCCACAGCCGCTCCGGCAGCCGTACCGACCTCAGCCGCAGTACCGCCACCGCCGCAACGGCCGCAGCAACCGGAGTCTCTGCTGCTGCTGCTGCTTCTGGTCGATACTGATATTCCTGATTGTGGCTCTCCTCGCCGCCATCGCCGGCACGGCCCTCTACGTCCTCTACCGTCCTCACCGCCCCGAGTTCACCGTCACGGCCCTCAAAATCGGGAAGCTCAACCTCACCGACAACCCCGACGGCGCCAGCTCACACCTCGTCACACGCTTCAACCTCACTATCGCTCCCAAAAACCCGAACAACCACCTCAGCTTCGCCTACGACTCCTTCGCGCTCACTCTCTCCGCCGCCAACAACGACGTCGTTCTCGGAAACGGCTCGATCCCGGCGTTCTTCAGCGACACGAAGAACTTCACGTCGTTCCGGTCGATCATCACCACGGCGAGTGACCTCGATTTGGAGTCGGTCAAGTCTCTGAGATCGGATCTGAAGCGGAAGGGCGGGGTTCCGATGAAGTTGCAGATGGACACCAAGGTGAAGGTGACGGTGGGAGGGAAATTGAAGAGCAAGAAGGTTGGGATTAGGGTTACGTGTCAGCAAATCAGAGGGGTTGCACCGAAAGGTAAGTCTCCGTCGGTGGCTTCTGTTGCTGACTCCCATTGCAAGGTTGATCTTCGGATCAAGATCTGGAGATGGACCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

267

Amino Acids

29.18

Weight (kDa)

10.21

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 129 - 231 4.5e-07 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 462
AccB1I GGYRCC 3 cut(s) 44, 56, 341
AccBSI CCGCTC 1 cut(s) 109
AccI GTMKAC 1 cut(s) 15
AccII CGCG 3 cut(s) 50, 65, 431
AclWI GGATC 3 cut(s) 475, 591, 785
AcoI YGGCCR 2 cut(s) 33, 157
AcuI CTGAAG 2 cut(s) 478, 608
AcyI GRCGYC 4 cut(s) 45, 57, 342, 459
AfaI GTAC 2 cut(s) 122, 140
AfiI CCNNNNNNNGG 3 cut(s) 220, 556, 763
AflIII ACRYGT 1 cut(s) 689
AgsI TTSAA 2 cut(s) 370, 661
AjiI CACGTC 1 cut(s) 516
AleI CACNNNNGTG 1 cut(s) 632
AluBI AGCT 3 cut(s) 316, 348, 411
AluI AGCT 3 cut(s) 316, 348, 411
Alw26I GTCTC 3 cut(s) 179, 576, 732
AlwI GGATC 3 cut(s) 475, 591, 785
Ama87I CYCGRG 1 cut(s) 281
AoxI GGCC 4 cut(s) 33, 157, 249, 297
ApeKI GCWGC 6 cut(s) 115, 162, 180, 183, 186, 189
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
Asp700I GAANNNNTTC 1 cut(s) 509
AspLEI GCGC 4 cut(s) 47, 59, 344, 433
AspS9I GGNCC 3 cut(s) 250, 298, 795
AsuC2I CCSGG 1 cut(s) 485
AsuHPI GGTGA 6 cut(s) 266, 280, 316, 526, 646, 652
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 1 cut(s) 795
BalI TGGCCA 1 cut(s) 35
BanI GGYRCC 3 cut(s) 44, 56, 341
BbsI GAAGAC 1 cut(s) 15
BbvCI CCTCAGC 2 cut(s) 129, 407
BbvI GCAGC 6 cut(s) 127, 167, 170, 173, 174, 176
BccI CCATC 3 cut(s) 245, 616, 786
BceAI ACGGC 9 cut(s) 58, 70, 103, 172, 264, 312, 355, 490, 555
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BcnI CCSGG 1 cut(s) 485
BcoDI GTCTC 3 cut(s) 179, 576, 732
BfoI RGCGCY 3 cut(s) 48, 60, 345
BglI GCCNNNNNGGC 3 cut(s) 112, 156, 248
BglII AGATCT 1 cut(s) 783
Bme1390I CCNGG 1 cut(s) 485
Bme18I GGWCC 1 cut(s) 795
BmeT110I CYCGRG 1 cut(s) 281
BmgBI CACGTC 1 cut(s) 516
BmgT120I GGNCC 3 cut(s) 250, 298, 795
BmiI GGNNCC 4 cut(s) 46, 58, 343, 606
BmrFI CCNGG 1 cut(s) 485
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 2 cut(s) 129, 407
BpuMI CCSGG 1 cut(s) 485
BsaAI YACGTR 1 cut(s) 690
BsaBI GATNNNNATC 1 cut(s) 782
BsaHI GRCGYC 4 cut(s) 45, 57, 342, 459
BsaJI CCNNGG 3 cut(s) 27, 537, 630
BsaWI WCCGGW 2 cut(s) 168, 522
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 367, 397
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 556, 763
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 757
Bse8I GATNNNNATC 1 cut(s) 782
BseDI CCNNGG 3 cut(s) 27, 537, 630
BseJI GATNNNNATC 1 cut(s) 782
BseLI CCNNNNNNNGG 3 cut(s) 220, 556, 763
BseMI GCAATG 1 cut(s) 757
BseMII CTCAG 3 cut(s) 143, 421, 566
BseRI GAGGAG 1 cut(s) 218
BseX3I CGGCCG 1 cut(s) 157
BseXI GCAGC 6 cut(s) 127, 167, 170, 173, 174, 176
Bsh1236I CGCG 3 cut(s) 50, 65, 431
Bsh1285I CGRYCG 2 cut(s) 160, 527
BshFI GGCC 4 cut(s) 35, 159, 251, 299
BshNI GGYRCC 3 cut(s) 44, 56, 341
BsiEI CGRYCG 2 cut(s) 160, 527
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 5 cut(s) 112, 169, 243, 485, 523
BslI CCNNNNNNNGG 3 cut(s) 220, 556, 763
BsmAI GTCTC 3 cut(s) 179, 576, 732
BsnI GGCC 4 cut(s) 35, 159, 251, 299
BsoBI CYCGRG 1 cut(s) 281
Bsp143I GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
BspANI GGCC 4 cut(s) 35, 159, 251, 299
BspCNI CTCAG 3 cut(s) 142, 420, 567
BspFNI CGCG 3 cut(s) 50, 65, 431
BspLI GGNNCC 4 cut(s) 46, 58, 343, 606
BspPI GGATC 3 cut(s) 475, 591, 785
BspQI GCTCTTC 1 cut(s) 656
BspT107I GGYRCC 3 cut(s) 44, 56, 341
BsrBI CCGCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 757
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 27, 537, 630
BssMI GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
BssNI GRCGYC 4 cut(s) 45, 57, 342, 459
BssT1I CCWWGG 2 cut(s) 27, 630
Bst4CI ACNGT 3 cut(s) 269, 292, 646
Bst6I CTCTTC 1 cut(s) 656
BstACI GRCGYC 4 cut(s) 45, 57, 342, 459
BstBAI YACGTR 1 cut(s) 690
BstC8I GCNNGC 2 cut(s) 244, 346
BstDEI CTNAG 3 cut(s) 129, 407, 575
BstDSI CCRYGG 1 cut(s) 537
BstFNI CGCG 3 cut(s) 50, 65, 431
BstH2I RGCGCY 3 cut(s) 48, 60, 345
BstHHI GCGC 4 cut(s) 47, 59, 344, 433
BstKTI GATC 7 cut(s) 483, 531, 581, 586, 772, 780, 786
BstMAI GTCTC 3 cut(s) 179, 576, 732
BstMBI GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
BstMCI CGRYCG 2 cut(s) 160, 527
BstSCI CCNGG 1 cut(s) 483
BstUI CGCG 3 cut(s) 50, 65, 431
BstV1I GCAGC 6 cut(s) 127, 167, 170, 173, 174, 176
BstV2I GAAGAC 1 cut(s) 15
BstX2I RGATCY 2 cut(s) 583, 783
BstYI RGATCY 2 cut(s) 583, 783
BstZI CGGCCG 1 cut(s) 157
BsuRI GGCC 4 cut(s) 35, 159, 251, 299
BtgI CCRYGG 1 cut(s) 537
BtgZI GCGATG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 516
Cac8I GCNNGC 2 cut(s) 244, 346
CfoI GCGC 4 cut(s) 47, 59, 344, 433
Cfr10I RCCGGY 1 cut(s) 242
Cfr13I GGNCC 3 cut(s) 250, 298, 795
Csp6I GTAC 2 cut(s) 121, 139
CviQI GTAC 2 cut(s) 121, 139
DdeI CTNAG 3 cut(s) 129, 407, 575
DinI GGCGCC 3 cut(s) 46, 58, 343
DpnI GATC 7 cut(s) 482, 530, 580, 585, 771, 779, 785
DpnII GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
EaeI YGGCCR 2 cut(s) 33, 157
EagI CGGCCG 1 cut(s) 157
Eam1104I CTCTTC 1 cut(s) 656
EarI CTCTTC 1 cut(s) 656
EciI GGCGGA 1 cut(s) 433
EclXI CGGCCG 1 cut(s) 157
Eco130I CCWWGG 2 cut(s) 27, 630
Eco47I GGWCC 1 cut(s) 795
Eco52I CGGCCG 1 cut(s) 157
Eco57I CTGAAG 2 cut(s) 478, 608
Eco88I CYCGRG 1 cut(s) 281
EcoT14I CCWWGG 2 cut(s) 27, 630
EgeI GGCGCC 3 cut(s) 46, 58, 343
EheI GGCGCC 3 cut(s) 46, 58, 343
ErhI CCWWGG 2 cut(s) 27, 630
FauI CCCGC 1 cut(s) 593
FblI GTMKAC 1 cut(s) 15
GlaI GCGC 4 cut(s) 46, 58, 343, 432
HaeII RGCGCY 3 cut(s) 48, 60, 345
HaeIII GGCC 4 cut(s) 35, 159, 251, 299
HapII CCGG 5 cut(s) 112, 169, 243, 485, 523
HhaI GCGC 4 cut(s) 47, 59, 344, 433
Hin1I GRCGYC 4 cut(s) 45, 57, 342, 459
Hin6I GCGC 4 cut(s) 45, 57, 342, 431
HinP1I GCGC 4 cut(s) 45, 57, 342, 431
HinfI GANTC 5 cut(s) 12, 172, 422, 560, 752
HpaII CCGG 5 cut(s) 112, 169, 243, 485, 523
HphI GGTGA 6 cut(s) 266, 280, 316, 526, 646, 652
Hpy166II GTNNAC 2 cut(s) 16, 288
Hpy188I TCNGA 7 cut(s) 470, 576, 583, 588, 609, 704, 777
Hpy188III TCNNGA 4 cut(s) 214, 310, 781, 787
Hpy8I GTNNAC 2 cut(s) 16, 288
Hpy99I CGWCG 5 cut(s) 341, 461, 464, 520, 736
HpyAV CCTTC 4 cut(s) 436, 589, 631, 664
HpyCH4III ACNGT 3 cut(s) 269, 292, 646
HpyCH4IV ACGT 4 cut(s) 258, 459, 515, 689
HpyCH4V TGCA 3 cut(s) 619, 713, 762
HpyF3I CTNAG 3 cut(s) 129, 407, 575
HpySE526I ACGT 4 cut(s) 258, 459, 515, 689
Hsp92I GRCGYC 4 cut(s) 45, 57, 342, 459
HspAI GCGC 4 cut(s) 45, 57, 342, 431
KasI GGCGCC 3 cut(s) 44, 56, 341
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Kzo9I GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 2 cut(s) 114, 388
LpnPI CCDG 9 cut(s) 125, 181, 182, 227, 256, 358, 498, 536, 772
Lsp1109I GCAGC 6 cut(s) 127, 167, 170, 173, 174, 176
MaeII ACGT 4 cut(s) 258, 459, 515, 689
MaeIII GTNAC 5 cut(s) 292, 358, 545, 640, 685
MalI GATC 7 cut(s) 482, 530, 580, 585, 771, 779, 785
MbiI CCGCTC 1 cut(s) 109
MboI GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
MboII GAAGA 5 cut(s) 15, 484, 517, 673, 764
MflI RGATCY 2 cut(s) 583, 783
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 1 cut(s) 656
MluNI TGGCCA 1 cut(s) 35
Mly113I GGCGCC 3 cut(s) 45, 57, 342
MlyI GAGTC 5 cut(s) 21, 181, 416, 569, 746
Mox20I TGGCCA 1 cut(s) 35
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 509
MscI TGGCCA 1 cut(s) 35
MseI TTAA 1 cut(s) 802
MslI CAYNNNNRTG 1 cut(s) 632
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 5 cut(s) 112, 169, 243, 485, 523
MspR9I CCNGG 1 cut(s) 485
MvnI CGCG 3 cut(s) 50, 65, 431
NaeI GCCGGC 1 cut(s) 244
NarI GGCGCC 3 cut(s) 45, 57, 342
NciI CCSGG 1 cut(s) 485
NdeII GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
NgoMIV GCCGGC 1 cut(s) 242
NlaIV GGNNCC 4 cut(s) 46, 58, 343, 606
NmuCI GTSAC 4 cut(s) 292, 358, 545, 640
OliI CACNNNNGTG 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 2 cut(s) 485, 524
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 509
PflFI GACNNNGTC 1 cut(s) 11
PleI GAGTC 5 cut(s) 20, 180, 416, 568, 746
PluTI GGCGCC 3 cut(s) 48, 60, 345
PpsI GAGTC 5 cut(s) 20, 180, 416, 568, 746
Ppu21I YACGTR 1 cut(s) 690
PspN4I GGNNCC 4 cut(s) 46, 58, 343, 606
PspPI GGNCC 3 cut(s) 250, 298, 795
PsuI RGATCY 2 cut(s) 583, 783
PsyI GACNNNGTC 1 cut(s) 11
RsaI GTAC 2 cut(s) 122, 140
RsaNI GTAC 2 cut(s) 121, 139
RseI CAYNNNNRTG 1 cut(s) 632
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 1 cut(s) 802
Sau3AI GATC 7 cut(s) 480, 528, 578, 583, 769, 777, 783
Sau96I GGNCC 3 cut(s) 250, 298, 795
SchI GAGTC 5 cut(s) 21, 181, 416, 569, 746
ScrFI CCNGG 1 cut(s) 485
SfoI GGCGCC 3 cut(s) 46, 58, 343
SinI GGWCC 1 cut(s) 795
SmiMI CAYNNNNRTG 1 cut(s) 632
Sse9I AATT 1 cut(s) 656
SspDI GGCGCC 3 cut(s) 44, 56, 341
StyD4I CCNGG 1 cut(s) 483
StyI CCWWGG 2 cut(s) 27, 630
TaaI ACNGT 3 cut(s) 269, 292, 646
TaiI ACGT 4 cut(s) 261, 462, 518, 692
TaqI TCGA 4 cut(s) 200, 479, 527, 552
TaqII GACCGA 1 cut(s) 553
TasI AATT 1 cut(s) 656
TauI GCSGC 8 cut(s) 50, 80, 109, 136, 153, 162, 236, 449
Tru1I TTAA 1 cut(s) 802
Tru9I TTAA 1 cut(s) 802
TseFI GTSAC 4 cut(s) 292, 358, 545, 640
TseI GCWGC 6 cut(s) 115, 162, 180, 183, 186, 189
Tsp45I GTSAC 4 cut(s) 292, 358, 545, 640
TspDTI ATGAA 1 cut(s) 626
TspGWI ACGGA 2 cut(s) 20, 720
Tth111I GACNNNGTC 1 cut(s) 11
VpaK11BI GGWCC 1 cut(s) 795
XmiI GTMKAC 1 cut(s) 15
XmnI GAANNNNTTC 1 cut(s) 509
ZraI GACGTC 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.