MD14G1150900.v1.1
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0007675
Physical Location & Seq
Reverse (-)
24405122 .. 24407308
2187 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1150900.v1.1.491

Sequence Viewer

Length: 633 bp
ATGGACAAGTTCAACTTTCTGAGAAATGGGATGTCCAGATTGCCTCCTGGTTTCCGATTCCAGCCAACAGATGAAGAACTTGTCTTTCAGTACCTGAGATGCAAAGTCTTTTCATGCCCCCTTCCTGCTTCCATTATTCCTGAGATCAACGTTTGCCTGTATGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAAGTATTTCTTCAGCAACAGGGAATCGAAATACCGGAATGGAAACCGAGCTAACAGGGTGACAAGTTCCGGTTACTGGAAAGCGACCGGCGTTGACAAAAAGATTGTATCTTCAAGGAAGAATAATATTGTGGGGAAGAAAAAGACTCTAGTTTTCTACAAAGGGAAGTCTCCAAATGTTTCTAAGACTGATTGGATCATGCATGAATATTGCCTTGTCAATGCAGAAACTACAGCTTCCACTCACACAACTGAGAATGCTTTAACCACGAAAGGAAACTGGGTTTTGTGTCGCGTGTTTTTGAAGAAAAGAAGTGGCAAGACGGATGAGGAGATTATGGTGAATTACAATGGCATCAGAGTTTGCGATAATGCAAGTCCTGTATCTTCTTCTTCATCTTGTTCGAGTTCCTGGCTAGTGGGATCACAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

211

Amino Acids

23.9

Weight (kDa)

9.37

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 138 1.1e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 492
AclI AACGTT 1 cut(s) 150
AclWI GGATC 3 cut(s) 158, 401, 628
AcuI CTGAAG 1 cut(s) 193
AfaI GTAC 1 cut(s) 92
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 3 cut(s) 13, 312, 502
AjnI CCWGG 3 cut(s) 46, 178, 608
AluBI AGCT 2 cut(s) 248, 434
AluI AGCT 2 cut(s) 248, 434
Alw26I GTCTC 1 cut(s) 372
AlwI GGATC 3 cut(s) 158, 401, 628
AlwNI CAGNNNCTG 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 203
AsuHPI GGTGA 3 cut(s) 194, 268, 550
BciT130I CCWGG 3 cut(s) 48, 180, 610
BcoDI GTCTC 1 cut(s) 372
BfaI CTAG 2 cut(s) 347, 614
BfmI CTRYAG 1 cut(s) 429
Bme1390I CCNGG 3 cut(s) 48, 180, 610
BmrFI CCNGG 3 cut(s) 48, 180, 610
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 2 cut(s) 89, 561
BmuI ACTGGG 1 cut(s) 487
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 2 cut(s) 231, 266
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 284
Bse1I ACTGG 2 cut(s) 278, 482
BseBI CCWGG 3 cut(s) 48, 180, 610
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 2 cut(s) 36, 529
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 4 cut(s) 11, 86, 132, 441
BseNI ACTGG 2 cut(s) 278, 482
BseRI GAGGAG 1 cut(s) 542
Bsh1236I CGCG 1 cut(s) 492
Bsh1285I CGRYCG 1 cut(s) 285
BsiEI CGRYCG 1 cut(s) 285
BsiSI CCGG 3 cut(s) 232, 267, 285
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 1 cut(s) 372
BsmI GAATGC 1 cut(s) 460
Bsp143I GATC 4 cut(s) 144, 163, 393, 620
BspCNI CTCAG 4 cut(s) 12, 87, 133, 442
BspFNI CGCG 1 cut(s) 492
BspPI GGATC 3 cut(s) 158, 401, 628
BsrFI RCCGGY 1 cut(s) 284
BsrI ACTGG 2 cut(s) 278, 482
BssAI RCCGGY 1 cut(s) 284
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 4 cut(s) 144, 163, 393, 620
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 3 cut(s) 48, 180, 610
BstDEI CTNAG 5 cut(s) 20, 95, 141, 381, 450
BstF5I GGATG 2 cut(s) 36, 529
BstFNI CGCG 1 cut(s) 492
BstKTI GATC 4 cut(s) 147, 166, 396, 623
BstMAI GTCTC 1 cut(s) 372
BstMBI GATC 4 cut(s) 144, 163, 393, 620
BstMCI CGRYCG 1 cut(s) 285
BstNI CCWGG 3 cut(s) 48, 180, 610
BstSCI CCNGG 3 cut(s) 46, 178, 608
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 492
BtsCI GGATG 2 cut(s) 36, 529
CaiI CAGNNNCTG 1 cut(s) 94
Cfr10I RCCGGY 1 cut(s) 284
Csp6I GTAC 1 cut(s) 91
CviAII CATG 3 cut(s) 114, 397, 401
CviJI RGCY 4 cut(s) 64, 248, 434, 613
CviKI_1 RGCY 4 cut(s) 64, 248, 434, 613
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 5 cut(s) 20, 95, 141, 381, 450
DpnI GATC 4 cut(s) 146, 165, 395, 622
DpnII GATC 4 cut(s) 144, 163, 393, 620
Eco130I CCWWGG 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 193
EcoRII CCWGG 3 cut(s) 46, 178, 608
EcoT14I CCWWGG 1 cut(s) 167
EcoT22I ATGCAT 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 3 cut(s) 117, 400, 404
FaiI YATR 5 cut(s) 115, 162, 398, 402, 536
FalI AAGNNNNNCTT 3 cut(s) 31, 191, 223
FatI CATG 3 cut(s) 113, 396, 400
FokI GGATG 2 cut(s) 43, 536
FspBI CTAG 2 cut(s) 347, 614
HapII CCGG 3 cut(s) 232, 267, 285
Hin1II CATG 3 cut(s) 117, 400, 404
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 3 cut(s) 57, 221, 343
HpaII CCGG 3 cut(s) 232, 267, 285
HphI GGTGA 3 cut(s) 194, 268, 550
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 21, 56, 557
Hpy188III TCNNGA 2 cut(s) 36, 140
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 1 cut(s) 131
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 102, 400, 422, 572
HpyF3I CTNAG 5 cut(s) 20, 95, 141, 381, 450
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 3 cut(s) 117, 400, 404
Kzo9I GATC 4 cut(s) 144, 163, 393, 620
LmnI GCTCC 1 cut(s) 190
LweI GCATC 2 cut(s) 89, 561
MaeI CTAG 2 cut(s) 347, 614
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 2 cut(s) 256, 269
MalI GATC 4 cut(s) 146, 165, 395, 622
MboI GATC 4 cut(s) 144, 163, 393, 620
MboII GAAGA 9 cut(s) 86, 199, 300, 328, 346, 514, 576, 579, 582
MluCI AATT 1 cut(s) 541
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 2 cut(s) 54, 520
Mph1103I ATGCAT 1 cut(s) 402
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 1 cut(s) 461
MspI CCGG 3 cut(s) 232, 267, 285
MspR9I CCNGG 3 cut(s) 48, 180, 610
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 3 cut(s) 48, 180, 610
MvnI CGCG 1 cut(s) 492
NdeII GATC 4 cut(s) 144, 163, 393, 620
NlaIII CATG 3 cut(s) 117, 400, 404
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 402
PctI GAATGC 1 cut(s) 460
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 57, 221
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 46, 178, 608
PspGI CCWGG 3 cut(s) 46, 178, 608
PstNI CAGNNNCTG 1 cut(s) 94
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 1 cut(s) 461
Sau3AI GATC 4 cut(s) 144, 163, 393, 620
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 48, 180, 610
SetI ASST 5 cut(s) 96, 153, 184, 250, 436
SfaNI GCATC 2 cut(s) 89, 561
SfcI CTRYAG 1 cut(s) 429
Sse9I AATT 1 cut(s) 541
SspI AATATT 2 cut(s) 325, 407
SspMI CTAG 2 cut(s) 347, 614
StyD4I CCNGG 3 cut(s) 46, 178, 608
StyI CCWWGG 1 cut(s) 167
TaiI ACGT 1 cut(s) 153
TaqI TCGA 2 cut(s) 224, 602
TasI AATT 1 cut(s) 541
TfiI GAWTC 2 cut(s) 57, 221
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TseFI GTSAC 1 cut(s) 256
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 4 cut(s) 87, 102, 417, 582
TspGWI ACGGA 1 cut(s) 536
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 2 cut(s) 347, 614
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.