FvH4_5g09000
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0007675
Physical Location & Seq
Forward (+)
5207444 .. 5208656
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09000.t1

Sequence Viewer

Length: 702 bp
ATGGACAAGTTCAACTTTGTTAGAAATGGGATGACTAGACTGCCTCCTGGTTTTCGGTTCCAGCCCACCGATGAAGAACTTGTCTTTCAGTACCTAAGGTGCAAGGTCTTCTCATGCCCTCTACCTGCTTCCATTATTCCTGAGATCAATGTCTGTGTGTATGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATATTTCTTCAGCAACAAGGAATCAAAATACCCTAATGGGAACAGAACAAACAGAGTGACAAGTTCTGGTTATTGGAAAGCAACCGGTTCAGATAAGAAGATTGTATCTGCTAGGAGAAATAACATTGTAGGGAAGAAGAAGAGTCTGGTTTTCTATAGAGGAAAAGCTCCAAATGGTTCTAAGACTGATTGGGTCATGCATGAATATTCTCTTGTCAATAACCTAGGAACTAGAGCTTTATCAACTGAGAACTCGATAAACCAGCAAGGAAATTGGGTTCTATGCCGAATATTTTTGAAGAAAAGAAGTTCTCACAAAGATGAAGATAATTTGCTGAATTATGATGGCTTCAAAGTTAACAATGCTGAAAAGGGTCAGCTTCAGATTACTAGGACAACTCCTGTGTCTTCATGCTCTTCTTGTTCGAGTTGCAGTGGCATCACAGAAGTCTCTTCGAGTCATGAAGCCGGTGATGAAGAAATCAGTGGCTGCGCGCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

234

Amino Acids

26.3

Weight (kDa)

8.86

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 138 6.5e-45 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccII CGCG 1 cut(s) 695
AclWI GGATC 1 cut(s) 158
AcuI CTGAAG 2 cut(s) 193, 566
AfaI GTAC 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 3 cut(s) 13, 499, 553
AjnI CCWGG 2 cut(s) 46, 178
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 3 cut(s) 368, 437, 580
AluI AGCT 3 cut(s) 368, 437, 580
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 690
ApeKI GCWGC 1 cut(s) 690
AsiGI ACCGGT 1 cut(s) 284
AspA2I CCTAGG 1 cut(s) 424
AspLEI GCGC 2 cut(s) 695, 697
AsuHPI GGTGA 2 cut(s) 194, 683
AvrII CCTAGG 1 cut(s) 424
AxyI CCTNAGG 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 100, 600
BbvI GCAGC 1 cut(s) 677
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 2 cut(s) 48, 180
BcoDI GTCTC 1 cut(s) 655
BfaI CTAG 5 cut(s) 36, 312, 425, 432, 591
BfmI CTRYAG 1 cut(s) 355
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 691
BlnI CCTAGG 1 cut(s) 424
BlsI GCNGC 1 cut(s) 692
Bme1390I CCNGG 2 cut(s) 48, 180
BmiI GGNNCC 1 cut(s) 59
BmrFI CCNGG 2 cut(s) 48, 180
BmsI GCATC 1 cut(s) 648
BpiI GAAGAC 2 cut(s) 100, 600
BsaJI CCNNGG 2 cut(s) 167, 424
BsaWI WCCGGW 1 cut(s) 284
Bse118I RCCGGY 2 cut(s) 284, 668
Bse21I CCTNAGG 1 cut(s) 95
BseBI CCWGG 2 cut(s) 48, 180
BseDI CCNNGG 2 cut(s) 167, 424
BseGI GGATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 132, 438
BsePI GCGCGC 1 cut(s) 693
BseXI GCAGC 1 cut(s) 677
Bsh1236I CGCG 1 cut(s) 695
BshTI ACCGGT 1 cut(s) 284
BsiSI CCGG 2 cut(s) 285, 669
BsmAI GTCTC 1 cut(s) 655
Bsp143I GATC 2 cut(s) 144, 163
BspCNI CTCAG 2 cut(s) 133, 439
BspFNI CGCG 1 cut(s) 695
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 1 cut(s) 59
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 158
BspQI GCTCTTC 1 cut(s) 622
BsrFI RCCGGY 2 cut(s) 284, 668
BssAI RCCGGY 2 cut(s) 284, 668
BssECI CCNNGG 2 cut(s) 167, 424
BssHII GCGCGC 1 cut(s) 693
BssMI GATC 2 cut(s) 144, 163
BssT1I CCWWGG 2 cut(s) 167, 424
Bst2UI CCWGG 2 cut(s) 48, 180
Bst6I CTCTTC 3 cut(s) 335, 622, 658
BstC8I GCNNGC 1 cut(s) 695
BstDEI CTNAG 4 cut(s) 95, 141, 381, 447
BstF5I GGATG 1 cut(s) 36
BstFNI CGCG 1 cut(s) 695
BstHHI GCGC 2 cut(s) 695, 697
BstKTI GATC 2 cut(s) 147, 166
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 2 cut(s) 144, 163
BstNI CCWGG 2 cut(s) 48, 180
BstSCI CCNGG 2 cut(s) 46, 178
BstSFI CTRYAG 1 cut(s) 355
BstUI CGCG 1 cut(s) 695
BstV1I GCAGC 1 cut(s) 677
BstV2I GAAGAC 2 cut(s) 100, 600
Bsu36I CCTNAGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 36
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 2 cut(s) 640, 691
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 695
CaiI CAGNNNCTG 1 cut(s) 690
CciI TCATGA 1 cut(s) 661
CfoI GCGC 2 cut(s) 695, 697
Cfr10I RCCGGY 2 cut(s) 284, 668
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 5 cut(s) 114, 397, 401, 612, 662
CviJI RGCY 7 cut(s) 64, 368, 437, 549, 580, 668, 690
CviKI_1 RGCY 7 cut(s) 64, 368, 437, 549, 580, 668, 690
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 4 cut(s) 95, 141, 381, 447
DpnI GATC 2 cut(s) 146, 165
DpnII GATC 2 cut(s) 144, 163
Eam1104I CTCTTC 3 cut(s) 335, 622, 658
EarI CTCTTC 3 cut(s) 335, 622, 658
Eco130I CCWWGG 2 cut(s) 167, 424
Eco57I CTGAAG 2 cut(s) 193, 566
Eco81I CCTNAGG 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 46, 178
EcoT14I CCWWGG 2 cut(s) 167, 424
EcoT22I ATGCAT 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 167, 424
FaeI CATG 5 cut(s) 117, 400, 404, 615, 665
FaiI YATR 9 cut(s) 115, 162, 357, 398, 402, 484, 543, 613, 663
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 5 cut(s) 113, 396, 400, 611, 661
Fnu4HI GCNGC 1 cut(s) 691
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 691
FspBI CTAG 5 cut(s) 36, 312, 425, 432, 591
GlaI GCGC 2 cut(s) 694, 696
GluI GCNGC 1 cut(s) 691
HapII CCGG 2 cut(s) 285, 669
HhaI GCGC 2 cut(s) 695, 697
Hin1II CATG 5 cut(s) 117, 400, 404, 615, 665
Hin6I GCGC 2 cut(s) 693, 695
HinP1I GCGC 2 cut(s) 693, 695
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 3 cut(s) 221, 343, 658
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 2 cut(s) 285, 669
HphI GGTGA 2 cut(s) 194, 683
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 292, 585
Hpy188III TCNNGA 2 cut(s) 140, 662
Hpy8I GTNNAC 1 cut(s) 559
HpyCH4V TGCA 3 cut(s) 102, 400, 633
HpyF3I CTNAG 4 cut(s) 95, 141, 381, 447
Hsp92II CATG 5 cut(s) 117, 400, 404, 615, 665
HspAI GCGC 2 cut(s) 693, 695
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 2 cut(s) 144, 163
LguI GCTCTTC 1 cut(s) 622
LmnI GCTCC 2 cut(s) 190, 373
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 1 cut(s) 648
MaeI CTAG 5 cut(s) 36, 312, 425, 432, 591
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 146, 165
MboI GATC 2 cut(s) 144, 163
MluCI AATT 3 cut(s) 472, 529, 538
MlyI GAGTC 2 cut(s) 352, 667
MnlI CCTC 3 cut(s) 54, 129, 353
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 1 cut(s) 558
MslI CAYNNNNRTG 1 cut(s) 519
MspI CCGG 2 cut(s) 285, 669
MspR9I CCNGG 2 cut(s) 48, 180
MvaI CCWGG 2 cut(s) 48, 180
MvnI CGCG 1 cut(s) 695
NdeII GATC 2 cut(s) 144, 163
NlaIII CATG 5 cut(s) 117, 400, 404, 615, 665
NlaIV GGNNCC 1 cut(s) 59
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 402
PagI TCATGA 1 cut(s) 661
PauI GCGCGC 1 cut(s) 693
PciSI GCTCTTC 1 cut(s) 622
PfeI GAWTC 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 1 cut(s) 692
PleI GAGTC 2 cut(s) 351, 666
PpsI GAGTC 2 cut(s) 351, 666
Psp6I CCWGG 2 cut(s) 46, 178
PspGI CCWGG 2 cut(s) 46, 178
PspN4I GGNNCC 1 cut(s) 59
PstNI CAGNNNCTG 1 cut(s) 690
PteI GCGCGC 1 cut(s) 693
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 519
SapI GCTCTTC 1 cut(s) 622
SaqAI TTAA 1 cut(s) 558
SatI GCNGC 1 cut(s) 691
Sau3AI GATC 2 cut(s) 144, 163
SchI GAGTC 2 cut(s) 352, 667
ScrFI CCNGG 2 cut(s) 48, 180
SetI ASST 9 cut(s) 96, 101, 108, 127, 184, 370, 426, 439, 582
SfaNI GCATC 1 cut(s) 648
SfcI CTRYAG 1 cut(s) 355
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 3 cut(s) 472, 529, 538
SspI AATATT 2 cut(s) 407, 492
SspMI CTAG 5 cut(s) 36, 312, 425, 432, 591
StyD4I CCNGG 2 cut(s) 46, 178
StyI CCWWGG 2 cut(s) 167, 424
TaqI TCGA 3 cut(s) 455, 626, 656
TasI AATT 3 cut(s) 472, 529, 538
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 1 cut(s) 558
Tru9I TTAA 1 cut(s) 558
TscAI CASTG 2 cut(s) 640, 691
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 690
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 6 cut(s) 87, 417, 537, 600, 678, 690
TspRI CASTG 2 cut(s) 640, 691
XmaJI CCTAGG 1 cut(s) 424
XspI CTAG 5 cut(s) 36, 312, 425, 432, 591
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.