pycom17g00490
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0007675
Physical Location & Seq
Reverse (-)
350960 .. 352017
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00490.1

Sequence Viewer

Length: 786 bp
ATGGAGAATATTAAAGAAAAGTATGTAATATATGGAGGAGTGAAGATGCCGGTTGGGTGCCGGTTTCGTCCCACGGGTGAAGAGCTGGTGATTCACTACTTGAGGAGGAAGGTTCATGCTGCCCCATTGCCTGCTTCCATCATTCCAGAGTTTGATGTCTTCCAAACTCATCCCTCGGGCTTGCCAGGTGATGTTAGGGAAACAAGGTATTTCTTTTACAATGAAAATATGAATAAGTATGTTGGCAAGAGAGCTGCTGGTTGTGGGTACTGGAAACCTATTGGCAAAAAGAAGCAAATTGTTGCTAATTCTAAATCCAATGAAGCCGTTGGGATCCGGAAGACGTTGGGTTTCTGTGAAAGGAAGCGCCGCGGTTGCCACAACCACCACCATGAAAGTACTAGTACTACCACTCAAACTCGATGGCTCATGCATGAATACCGCCTCGTGGCTTCTCAAGCGAATCCAACCCAGGCTTTCAAAGCGGGAGTGGGAAACTGGGTGCTGTTTCGCATATTTCAGAAAAAGAGAAGGCCTACTCAAAGAACATCAGATGATATGGGGGTCGTTTCTCAACGCTCATCAAATTGCAAGAGGAATCGGAGATTAATGGAGGAATATATCTCCGCAGCTGACCATCGTTCACGACGTTCGGATCCTAATCTTACAACATTTTCTTCCCCATCATGCTCGAGTGATATCACTCATGAGCTCACTTCCAATGACAATGGCGAGCTAGACGATGATCAGGAGGAACACAGTGTTAGCATGCGGATTAATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

262

Amino Acids

29.98

Weight (kDa)

9.65

Isoelectric Point (pI)

60.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 17 - 149 1.3e-29 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 57
AccII CGCG 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 336
AciI CCGC 6 cut(s) 370, 372, 442, 485, 627, 772
AclWI GGATC 4 cut(s) 328, 341, 650, 663
AfaI GTAC 3 cut(s) 269, 400, 406
AfiI CCNNNNNNNGG 1 cut(s) 448
AgsI TTSAA 1 cut(s) 481
AhlI ACTAGT 1 cut(s) 401
AjnI CCWGG 2 cut(s) 184, 471
AluBI AGCT 5 cut(s) 85, 254, 632, 712, 736
AluI AGCT 5 cut(s) 85, 254, 632, 712, 736
Alw21I GWGCWC 1 cut(s) 714
AlwI GGATC 4 cut(s) 328, 341, 650, 663
Ama87I CYCGRG 2 cut(s) 175, 691
Aor13HI TCCGGA 1 cut(s) 336
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 3 cut(s) 119, 254, 629
AseI ATTAAT 2 cut(s) 608, 777
AspLEI GCGC 1 cut(s) 369
AsuHPI GGTGA 3 cut(s) 89, 100, 200
AvaI CYCGRG 2 cut(s) 175, 691
BamHI GGATCC 2 cut(s) 333, 655
BanI GGYRCC 1 cut(s) 57
BanII GRGCYC 1 cut(s) 714
BauI CACGAG 1 cut(s) 446
BbsI GAAGAC 2 cut(s) 151, 347
Bbv12I GWGCWC 1 cut(s) 714
BbvI GCAGC 3 cut(s) 106, 241, 641
BccI CCATC 4 cut(s) 146, 417, 645, 691
BceAI ACGGC 1 cut(s) 311
BciT130I CCWGG 2 cut(s) 186, 473
BclI TGATCA 1 cut(s) 745
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 402, 737
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 4 cut(s) 120, 255, 370, 630
BlsI GCNGC 4 cut(s) 121, 256, 371, 631
BmcAI AGTACT 2 cut(s) 400, 406
Bme1390I CCNGG 2 cut(s) 186, 473
BmeT110I CYCGRG 2 cut(s) 175, 691
BmiI GGNNCC 3 cut(s) 59, 335, 657
BmrFI CCNGG 2 cut(s) 186, 473
BmrI ACTGGG 1 cut(s) 508
BmsI GCATC 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 508
BpiI GAAGAC 2 cut(s) 151, 347
BpuEI CTTGAG 2 cut(s) 121, 441
BsaBI GATNNNNATC 1 cut(s) 660
BsaJI CCNNGG 4 cut(s) 72, 174, 370, 471
BsaWI WCCGGW 1 cut(s) 336
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 2 cut(s) 49, 60
Bse1I ACTGG 2 cut(s) 275, 503
Bse3DI GCAATG 1 cut(s) 125
Bse8I GATNNNNATC 1 cut(s) 660
BseAI TCCGGA 1 cut(s) 336
BseBI CCWGG 2 cut(s) 186, 473
BseDI CCNNGG 4 cut(s) 72, 174, 370, 471
BseGI GGATG 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 660
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMI GCAATG 1 cut(s) 125
BseNI ACTGG 2 cut(s) 275, 503
BseRI GAGGAG 2 cut(s) 51, 118
BseXI GCAGC 3 cut(s) 106, 241, 641
Bsh1236I CGCG 1 cut(s) 372
BshFI GGCC 1 cut(s) 535
BshNI GGYRCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 714
BsiHKCI CYCGRG 2 cut(s) 175, 691
BsiSI CCGG 3 cut(s) 50, 61, 337
BslFI GGGAC 1 cut(s) 54
BslI CCNNNNNNNGG 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 54
BsnI GGCC 1 cut(s) 535
BsoBI CYCGRG 2 cut(s) 175, 691
Bsp1286I GDGCHC 1 cut(s) 714
Bsp13I TCCGGA 1 cut(s) 336
Bsp143I GATC 3 cut(s) 333, 655, 745
BspACI CCGC 6 cut(s) 370, 372, 442, 485, 627, 772
BspANI GGCC 1 cut(s) 535
BspEI TCCGGA 1 cut(s) 336
BspFNI CGCG 1 cut(s) 372
BspHI TCATGA 1 cut(s) 706
BspLI GGNNCC 3 cut(s) 59, 335, 657
BspPI GGATC 4 cut(s) 328, 341, 650, 663
BspQI GCTCTTC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 57
BsrDI GCAATG 1 cut(s) 125
BsrFI RCCGGY 2 cut(s) 49, 60
BsrI ACTGG 2 cut(s) 275, 503
BssAI RCCGGY 2 cut(s) 49, 60
BssECI CCNNGG 4 cut(s) 72, 174, 370, 471
BssMI GATC 3 cut(s) 333, 655, 745
BssSI CACGAG 1 cut(s) 446
Bst2BI CACGAG 1 cut(s) 446
Bst2UI CCWGG 2 cut(s) 186, 473
Bst4CI ACNGT 1 cut(s) 761
Bst6I CTCTTC 1 cut(s) 75
BstC8I GCNNGC 4 cut(s) 132, 182, 734, 770
BstDSI CCRYGG 2 cut(s) 72, 370
BstF5I GGATG 1 cut(s) 169
BstFNI CGCG 1 cut(s) 372
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 1 cut(s) 369
BstKTI GATC 3 cut(s) 336, 658, 748
BstMBI GATC 3 cut(s) 333, 655, 745
BstMWI GCNNNNNNNGC 3 cut(s) 375, 458, 482
BstNI CCWGG 2 cut(s) 186, 473
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 2 cut(s) 184, 471
BstUI CGCG 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 106, 241, 641
BstV2I GAAGAC 2 cut(s) 151, 347
BstX2I RGATCY 2 cut(s) 333, 655
BstYI RGATCY 2 cut(s) 333, 655
BsuRI GGCC 1 cut(s) 535
BtgI CCRYGG 2 cut(s) 72, 370
BtsCI GGATG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 766
Cac8I GCNNGC 4 cut(s) 132, 182, 734, 770
CciI TCATGA 1 cut(s) 706
CfoI GCGC 1 cut(s) 369
Cfr10I RCCGGY 2 cut(s) 49, 60
Cfr42I CCGCGG 1 cut(s) 373
Csp6I GTAC 3 cut(s) 268, 399, 405
CviAII CATG 7 cut(s) 116, 392, 430, 434, 687, 707, 769
CviQI GTAC 3 cut(s) 268, 399, 405
DpnI GATC 3 cut(s) 335, 657, 747
DpnII GATC 3 cut(s) 333, 655, 745
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Ecl136II GAGCTC 1 cut(s) 712
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 714
Eco32I GATATC 1 cut(s) 700
Eco53kI GAGCTC 1 cut(s) 712
Eco88I CYCGRG 2 cut(s) 175, 691
EcoICRI GAGCTC 1 cut(s) 712
EcoRII CCWGG 2 cut(s) 184, 471
EcoRV GATATC 1 cut(s) 700
EcoT22I ATGCAT 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 714
FaeI CATG 7 cut(s) 119, 395, 433, 437, 690, 710, 772
FaqI GGGAC 1 cut(s) 54
FatI CATG 7 cut(s) 115, 391, 429, 433, 686, 706, 768
FauI CCCGC 1 cut(s) 478
FbaI TGATCA 1 cut(s) 745
Fnu4HI GCNGC 4 cut(s) 120, 255, 370, 630
FokI GGATG 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 4 cut(s) 120, 255, 370, 630
FspBI CTAG 2 cut(s) 402, 737
GlaI GCGC 1 cut(s) 368
GluI GCNGC 4 cut(s) 120, 255, 370, 630
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 1 cut(s) 535
HapII CCGG 3 cut(s) 50, 61, 337
HhaI GCGC 1 cut(s) 369
Hin1II CATG 7 cut(s) 119, 395, 433, 437, 690, 710, 772
Hin6I GCGC 1 cut(s) 367
HinP1I GCGC 1 cut(s) 367
HinfI GANTC 3 cut(s) 91, 463, 598
HpaII CCGG 3 cut(s) 50, 61, 337
HphI GGTGA 3 cut(s) 89, 100, 200
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 4 cut(s) 522, 553, 603, 655
Hpy188III TCNNGA 5 cut(s) 146, 337, 645, 707, 749
Hpy8I GTNNAC 1 cut(s) 644
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 2 cut(s) 103, 525
HpyCH4III ACNGT 1 cut(s) 761
HpyCH4IV ACGT 2 cut(s) 344, 649
HpyCH4V TGCA 2 cut(s) 433, 591
HpyF10VI GCNNNNNNNGC 3 cut(s) 375, 458, 482
HpySE526I ACGT 2 cut(s) 344, 649
Hsp92II CATG 7 cut(s) 119, 395, 433, 437, 690, 710, 772
HspAI GCGC 1 cut(s) 367
Kpn2I TCCGGA 1 cut(s) 336
Ksp22I TGATCA 1 cut(s) 745
KspI CCGCGG 1 cut(s) 373
Kzo9I GATC 3 cut(s) 333, 655, 745
LguI GCTCTTC 1 cut(s) 75
Lsp1109I GCAGC 3 cut(s) 106, 241, 641
LweI GCATC 1 cut(s) 36
MaeI CTAG 2 cut(s) 402, 737
MaeII ACGT 2 cut(s) 344, 649
MalI GATC 3 cut(s) 335, 657, 747
MboI GATC 3 cut(s) 333, 655, 745
MboII GAAGA 5 cut(s) 55, 92, 151, 352, 669
MflI RGATCY 2 cut(s) 333, 655
MhlI GDGCHC 1 cut(s) 714
MluCI AATT 3 cut(s) 297, 307, 586
MmeI TCCRAC 1 cut(s) 491
MnlI CCTC 8 cut(s) 29, 96, 99, 184, 455, 588, 607, 745
Mph1103I ATGCAT 1 cut(s) 435
MroI TCCGGA 1 cut(s) 336
MseI TTAA 3 cut(s) 12, 608, 777
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 2 cut(s) 372, 632
MspI CCGG 3 cut(s) 50, 61, 337
MspR9I CCNGG 2 cut(s) 186, 473
MvaI CCWGG 2 cut(s) 186, 473
MvnI CGCG 1 cut(s) 372
MwoI GCNNNNNNNGC 3 cut(s) 375, 458, 482
NdeII GATC 3 cut(s) 333, 655, 745
NlaIII CATG 7 cut(s) 119, 395, 433, 437, 690, 710, 772
NlaIV GGNNCC 3 cut(s) 59, 335, 657
NsiI ATGCAT 1 cut(s) 435
NspI RCATGY 1 cut(s) 772
PaeI GCATGC 1 cut(s) 772
PaeR7I CTCGAG 1 cut(s) 691
PagI TCATGA 1 cut(s) 706
PceI AGGCCT 1 cut(s) 535
PciSI GCTCTTC 1 cut(s) 75
PcsI WCGNNNNNNNCGW 1 cut(s) 646
PfeI GAWTC 3 cut(s) 91, 463, 598
PkrI GCNGC 4 cut(s) 121, 256, 371, 631
PshBI ATTAAT 2 cut(s) 608, 777
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 2 cut(s) 184, 471
PspGI CCWGG 2 cut(s) 184, 471
PspN4I GGNNCC 3 cut(s) 59, 335, 657
PspXI VCTCGAGB 1 cut(s) 691
PsuI RGATCY 2 cut(s) 333, 655
PvuII CAGCTG 1 cut(s) 632
RsaI GTAC 3 cut(s) 269, 400, 406
RsaNI GTAC 3 cut(s) 268, 399, 405
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 714
SacII CCGCGG 1 cut(s) 373
SapI GCTCTTC 1 cut(s) 75
SaqAI TTAA 3 cut(s) 12, 608, 777
SatI GCNGC 4 cut(s) 120, 255, 370, 630
Sau3AI GATC 3 cut(s) 333, 655, 745
ScaI AGTACT 2 cut(s) 400, 406
ScrFI CCNGG 2 cut(s) 186, 473
SduI GDGCHC 1 cut(s) 714
SfaNI GCATC 1 cut(s) 36
Sfr274I CTCGAG 1 cut(s) 691
Sfr303I CCGCGG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 373
SlaI CTCGAG 1 cut(s) 691
SmiMI CAYNNNNRTG 1 cut(s) 390
SmlI CTYRAG 3 cut(s) 100, 456, 691
SmoI CTYRAG 3 cut(s) 100, 456, 691
SpeI ACTAGT 1 cut(s) 401
SphI GCATGC 1 cut(s) 772
Sse9I AATT 3 cut(s) 297, 307, 586
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 6 cut(s) 370, 372, 442, 485, 627, 772
SspI AATATT 2 cut(s) 10, 781
SspMI CTAG 2 cut(s) 402, 737
SstI GAGCTC 1 cut(s) 714
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 2 cut(s) 184, 471
TaaI ACNGT 1 cut(s) 761
TaiI ACGT 2 cut(s) 347, 652
TaqI TCGA 2 cut(s) 421, 692
TasI AATT 3 cut(s) 297, 307, 586
TatI WGTACW 2 cut(s) 398, 404
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 3 cut(s) 91, 463, 598
Tru1I TTAA 3 cut(s) 12, 608, 777
Tru9I TTAA 3 cut(s) 12, 608, 777
TscAI CASTG 1 cut(s) 766
TseI GCWGC 3 cut(s) 119, 254, 629
TspDTI ATGAA 6 cut(s) 104, 237, 245, 336, 408, 450
TspRI CASTG 1 cut(s) 766
VspI ATTAAT 2 cut(s) 608, 777
XceI RCATGY 1 cut(s) 772
XhoI CTCGAG 1 cut(s) 691
XspI CTAG 2 cut(s) 402, 737
ZrmI AGTACT 2 cut(s) 400, 406
Zsp2I ATGCAT 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.