RLG00000004620
NAC Family

NAC transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0007675
Physical Location & Seq
Forward (+)
60867330 .. 60868223
894 bp
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UTR
Exon/CDS
Intron
RLM00000004620

Sequence Viewer

Length: 705 bp
ATGGACAAGTTCAACTTTGTTAAAAATGGGATGACCAGACTGCCCCCCGGTTTTCGATTCCAGCCCACCGATGAAGAACTTGTCTTTCAGTACCTAAGGTGCAAGGTCTTCTCATGTCCTCTACCTGCTTCCATTATTCCTGAGATCAATGTTTGTTTGTATGATCCTTGGGATTTGCCAGGTGATTTGGAGCAAGAGAGATATTTCTTCAGCAACAAGGAATCAAAATACCCTAATGGGAACAGAACAAACAGAGTGACAAGTTCTGGTTATTGGAAAGCAACCGGTTCAGATAAGAAAATTGTATCTCCTAGGAGGAATAACATTGAAGGGAAGAAGAAGAGTCTGGTTTTCTATAGAGGAAAAGCTCCAAACGGTTCCAAGACTGATTGGGTCATGCATGAATATTCTCTTGTCAATAATCTAGGAACTACAGCTTCATCAACTGAGAACACTATAAACCAGAAAGGAAATTGGGTTCTATGCCGAATATTTTTGAAGAAAAGAAGTTGTCAGAAAGATGAGGATATATTGCTTAGCTATGATGGCTTCAAAGTTAAGAATGCTGAAAAGGGTCCGCTTCAGATTACTAGTATAAGTCCTGTGTCTTCATCTTCATCTTGTTCGAGTTGTAGTGGCATCACAGATATATCTTCGAGTCATGAAGCCGGTGATGAAGAAATCAGTGGCTGCACTAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

235

Amino Acids

26.32

Weight (kDa)

8.82

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 138 1.1e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AciI CCGC 1 cut(s) 578
AclWI GGATC 1 cut(s) 158
AcsI RAATTY 1 cut(s) 698
AcuI CTGAAG 2 cut(s) 193, 566
AfaI GTAC 1 cut(s) 92
AgeI ACCGGT 1 cut(s) 284
AgsI TTSAA 4 cut(s) 13, 329, 499, 553
AhlI ACTAGT 1 cut(s) 590
AjnI CCWGG 1 cut(s) 178
AloI GAACNNNNNNTCC 2 cut(s) 462, 494
AluBI AGCT 3 cut(s) 368, 437, 540
AluI AGCT 3 cut(s) 368, 437, 540
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 690
ApeKI GCWGC 1 cut(s) 690
ApoI RAATTY 1 cut(s) 698
AsiGI ACCGGT 1 cut(s) 284
AspA2I CCTAGG 1 cut(s) 311
AspS9I GGNCC 1 cut(s) 575
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 194, 683
AvaII GGWCC 1 cut(s) 575
AvrII CCTAGG 1 cut(s) 311
AxyI CCTNAGG 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 100, 600
BbvI GCAGC 1 cut(s) 677
BccI CCATC 1 cut(s) 539
BciT130I CCWGG 1 cut(s) 180
BcnI CCSGG 1 cut(s) 48
BcuI ACTAGT 1 cut(s) 590
BfaI CTAG 3 cut(s) 312, 425, 591
BfmI CTRYAG 2 cut(s) 355, 432
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 691
BlnI CCTAGG 1 cut(s) 311
BlpI GCTNAGC 1 cut(s) 536
BlsI GCNGC 1 cut(s) 692
Bme1390I CCNGG 2 cut(s) 48, 180
Bme18I GGWCC 1 cut(s) 575
BmgT120I GGNCC 1 cut(s) 575
BmiI GGNNCC 2 cut(s) 379, 576
BmrFI CCNGG 2 cut(s) 48, 180
BmsI GCATC 1 cut(s) 648
BpiI GAAGAC 2 cut(s) 100, 600
Bpu1102I GCTNAGC 1 cut(s) 536
BpuMI CCSGG 1 cut(s) 48
BsaJI CCNNGG 3 cut(s) 46, 167, 311
BsaWI WCCGGW 1 cut(s) 284
Bse118I RCCGGY 2 cut(s) 284, 668
Bse21I CCTNAGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 3 cut(s) 46, 167, 311
BseGI GGATG 1 cut(s) 36
BseMII CTCAG 2 cut(s) 132, 438
BseXI GCAGC 1 cut(s) 677
BsgI GTGCAG 1 cut(s) 676
BshTI ACCGGT 1 cut(s) 284
BsiSI CCGG 3 cut(s) 48, 285, 669
BsmI GAATGC 1 cut(s) 568
Bsp143I GATC 2 cut(s) 144, 163
Bsp1720I GCTNAGC 1 cut(s) 536
BspACI CCGC 1 cut(s) 578
BspCNI CTCAG 2 cut(s) 133, 439
BspHI TCATGA 1 cut(s) 661
BspLI GGNNCC 2 cut(s) 379, 576
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 1 cut(s) 158
BsrFI RCCGGY 2 cut(s) 284, 668
BssAI RCCGGY 2 cut(s) 284, 668
BssECI CCNNGG 3 cut(s) 46, 167, 311
BssMI GATC 2 cut(s) 144, 163
BssT1I CCWWGG 2 cut(s) 167, 311
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 377
Bst6I CTCTTC 1 cut(s) 335
BstDEI CTNAG 4 cut(s) 95, 141, 447, 536
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 2 cut(s) 147, 166
BstMBI GATC 2 cut(s) 144, 163
BstMWI GCNNNNNNNGC 1 cut(s) 546
BstNI CCWGG 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 46, 178
BstSFI CTRYAG 2 cut(s) 355, 432
BstV1I GCAGC 1 cut(s) 677
BstV2I GAAGAC 2 cut(s) 100, 600
Bsu36I CCTNAGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 36
BtsIMutI CAGTG 1 cut(s) 691
BveI ACCTGC 1 cut(s) 133
CaiI CAGNNNCTG 1 cut(s) 690
CciI TCATGA 1 cut(s) 661
Cfr10I RCCGGY 2 cut(s) 284, 668
Cfr13I GGNCC 1 cut(s) 575
Csp6I GTAC 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 284
CviAII CATG 4 cut(s) 114, 397, 401, 662
CviJI RGCY 7 cut(s) 64, 368, 437, 540, 549, 668, 690
CviKI_1 RGCY 7 cut(s) 64, 368, 437, 540, 549, 668, 690
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 4 cut(s) 95, 141, 447, 536
DpnI GATC 2 cut(s) 146, 165
DpnII GATC 2 cut(s) 144, 163
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco130I CCWWGG 2 cut(s) 167, 311
Eco47I GGWCC 1 cut(s) 575
Eco57I CTGAAG 2 cut(s) 193, 566
Eco81I CCTNAGG 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 178
EcoT14I CCWWGG 2 cut(s) 167, 311
EcoT22I ATGCAT 1 cut(s) 402
ErhI CCWWGG 2 cut(s) 167, 311
FaeI CATG 4 cut(s) 117, 400, 404, 665
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 4 cut(s) 113, 396, 400, 661
Fnu4HI GCNGC 1 cut(s) 691
FokI GGATG 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 691
FspBI CTAG 3 cut(s) 312, 425, 591
GluI GCNGC 1 cut(s) 691
HapII CCGG 3 cut(s) 48, 285, 669
Hin1II CATG 4 cut(s) 117, 400, 404, 665
HinfI GANTC 4 cut(s) 57, 221, 343, 658
HpaII CCGG 3 cut(s) 48, 285, 669
HphI GGTGA 2 cut(s) 194, 683
Hpy188I TCNGA 3 cut(s) 292, 516, 585
Hpy188III TCNNGA 2 cut(s) 140, 662
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 102, 400, 693
HpyF10VI GCNNNNNNNGC 1 cut(s) 546
HpyF3I CTNAG 4 cut(s) 95, 141, 447, 536
Hsp92II CATG 4 cut(s) 117, 400, 404, 665
Kzo9I GATC 2 cut(s) 144, 163
LmnI GCTCC 2 cut(s) 190, 373
Lsp1109I GCAGC 1 cut(s) 677
LweI GCATC 1 cut(s) 648
MaeI CTAG 3 cut(s) 312, 425, 591
MaeIII GTNAC 1 cut(s) 256
MalI GATC 2 cut(s) 146, 165
MboI GATC 2 cut(s) 144, 163
MluCI AATT 3 cut(s) 300, 472, 698
MlyI GAGTC 2 cut(s) 352, 667
MnlI CCTC 4 cut(s) 129, 309, 353, 517
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 2 cut(s) 21, 558
MspI CCGG 3 cut(s) 48, 285, 669
MspR9I CCNGG 2 cut(s) 48, 180
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 1 cut(s) 546
NciI CCSGG 1 cut(s) 48
NdeII GATC 2 cut(s) 144, 163
NlaIII CATG 4 cut(s) 117, 400, 404, 665
NlaIV GGNNCC 2 cut(s) 379, 576
NmuCI GTSAC 1 cut(s) 256
NsiI ATGCAT 1 cut(s) 402
PagI TCATGA 1 cut(s) 661
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 2 cut(s) 57, 221
PinAI ACCGGT 1 cut(s) 284
PkrI GCNGC 1 cut(s) 692
PleI GAGTC 2 cut(s) 351, 666
PpsI GAGTC 2 cut(s) 351, 666
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 379, 576
PspPI GGNCC 1 cut(s) 575
PstNI CAGNNNCTG 1 cut(s) 690
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 21, 558
SatI GCNGC 1 cut(s) 691
Sau3AI GATC 2 cut(s) 144, 163
Sau96I GGNCC 1 cut(s) 575
SchI GAGTC 2 cut(s) 352, 667
ScrFI CCNGG 2 cut(s) 48, 180
SetI ASST 8 cut(s) 96, 101, 108, 127, 184, 370, 439, 542
SfaNI GCATC 1 cut(s) 648
SfcI CTRYAG 2 cut(s) 355, 432
SinI GGWCC 1 cut(s) 575
SpeI ACTAGT 1 cut(s) 590
Sse9I AATT 3 cut(s) 300, 472, 698
SsiI CCGC 1 cut(s) 578
SspI AATATT 2 cut(s) 407, 492
SspMI CTAG 3 cut(s) 312, 425, 591
StyD4I CCNGG 2 cut(s) 46, 178
StyI CCWWGG 2 cut(s) 167, 311
TaaI ACNGT 1 cut(s) 377
TaqI TCGA 3 cut(s) 55, 626, 656
TasI AATT 3 cut(s) 300, 472, 698
TfiI GAWTC 2 cut(s) 57, 221
Tru1I TTAA 2 cut(s) 21, 558
Tru9I TTAA 2 cut(s) 21, 558
TscAI CASTG 1 cut(s) 691
TseFI GTSAC 1 cut(s) 256
TseI GCWGC 1 cut(s) 690
Tsp45I GTSAC 1 cut(s) 256
TspDTI ATGAA 7 cut(s) 87, 417, 429, 600, 606, 678, 690
TspRI CASTG 1 cut(s) 691
VpaK11BI GGWCC 1 cut(s) 575
XapI RAATTY 1 cut(s) 698
XmaJI CCTAGG 1 cut(s) 311
XspI CTAG 3 cut(s) 312, 425, 591
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.