Prupe.3G310600_v2.0.a1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0007675
Physical Location & Seq
Forward (+)
26977887 .. 26979629
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G310600.1

Sequence Viewer

Length: 714 bp
ATGGAGAAATTACCAAACTTTGTTATAAACGGAGGAGTGAAGATGCCAGTTGGATACCGGTTTCATCCCACGGATGAAGAGCTTGTGATCCACTACTTGAAGAGAAAGGTCCATGCCGCGCCATTGCCTGCTTCCATCATTCCCGACTTTGACGTCTTCCACACTCATCCCTGGTGCTTGCCAGGTTGTGGAGGTGATGTTAGGGAAAAGAGGTATTTCTTTTACAATCAAATAACTGCGAATGAGATTGACGATACTAAGAGAGCTGCTGGCTGTGGTTACTGGAAGCCTATGGGCAAAGAGAAGCAAATTGTTGATCCCGAAAGCAGCGAAGCAGTTGGGATCAGGAAAACGTTGGTTTTCTGCCGAAGGAAGCGCCGTTACCATGAGACTCAAACTAAAACTCGATGGCTCATGCATGAATATCAGCTCTTGTCTTCTCAAGTAAACCCAACCCATACCCAGGCATCTAAAAGGGAACTGGAAAACTGGGTTGTGTATCGCGTATTTCAGAGAAAGAGAAAGCCTCAAAGATCATCAGATATTATTTCTCAACCCTCCAACAGCAAGAGGACTCGGACTCAGAGATTAGTGGAGGCGATTACACCTTCTTCCTCCTCCTCATGTTCGAGTGATATCACTCACCTCTCTTCCAATGCCAATAGGCTAGATCATGATCAGGAGGAAAACAGCAGTGCTGCTGCTGATAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

238

Amino Acids

27.32

Weight (kDa)

9.36

Isoelectric Point (pI)

53.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AasI GACNNNNNNGTC 1 cut(s) 152
AatII GACGTC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 188
AccII CGCG 2 cut(s) 119, 504
AciI CCGC 1 cut(s) 117
AclI AACGTT 1 cut(s) 353
AclWI GGATC 3 cut(s) 82, 311, 350
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 188, 463
AgeI ACCGGT 1 cut(s) 57
AgsI TTSAA 1 cut(s) 100
AjnI CCWGG 3 cut(s) 170, 181, 462
AluBI AGCT 3 cut(s) 82, 266, 430
AluI AGCT 3 cut(s) 82, 266, 430
Alw26I GTCTC 1 cut(s) 383
AlwI GGATC 3 cut(s) 82, 311, 350
ApeKI GCWGC 4 cut(s) 266, 327, 698, 701
AsiGI ACCGGT 1 cut(s) 57
AspLEI GCGC 2 cut(s) 121, 378
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 206, 635
AvaII GGWCC 1 cut(s) 109
BarI GAAGNNNNNNTAC 2 cut(s) 365, 397
BbsI GAAGAC 2 cut(s) 148, 429
BbvI GCAGC 4 cut(s) 253, 339, 685, 688
BccI CCATC 2 cut(s) 143, 402
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 3 cut(s) 172, 183, 464
BciVI GTATCC 1 cut(s) 47
BclI TGATCA 1 cut(s) 676
BcoDI GTCTC 1 cut(s) 383
BfaI CTAG 1 cut(s) 668
BfoI RGCGCY 1 cut(s) 379
BfuI GTATCC 1 cut(s) 47
BisI GCNGC 5 cut(s) 117, 267, 328, 699, 702
BlsI GCNGC 5 cut(s) 118, 268, 329, 700, 703
Bme1390I CCNGG 3 cut(s) 172, 183, 464
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmrFI CCNGG 3 cut(s) 172, 183, 464
BmrI ACTGGG 1 cut(s) 499
BmsI GCATC 2 cut(s) 33, 476
BmuI ACTGGG 1 cut(s) 499
BpiI GAAGAC 2 cut(s) 148, 429
BplI GAGNNNNNCTC 2 cut(s) 511, 543
BpuEI CTTGAG 1 cut(s) 426
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 3 cut(s) 69, 170, 462
BsaWI WCCGGW 1 cut(s) 57
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 463
Bse118I RCCGGY 1 cut(s) 57
Bse1I ACTGG 4 cut(s) 47, 287, 486, 494
Bse3DI GCAATG 1 cut(s) 122
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 3 cut(s) 172, 183, 464
BseDI CCNNGG 3 cut(s) 69, 170, 462
BseGI GGATG 3 cut(s) 64, 79, 166
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 2 cut(s) 188, 463
BseMI GCAATG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 596
BseNI ACTGG 4 cut(s) 47, 287, 486, 494
BseRI GAGGAG 3 cut(s) 48, 607, 610
BseXI GCAGC 4 cut(s) 253, 339, 685, 688
Bsh1236I CGCG 2 cut(s) 119, 504
BshTI ACCGGT 1 cut(s) 57
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 2 cut(s) 188, 463
BsmAI GTCTC 1 cut(s) 383
Bsp143I GATC 6 cut(s) 87, 316, 342, 533, 670, 676
BspACI CCGC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 595
BspFNI CGCG 2 cut(s) 119, 504
BspHI TCATGA 1 cut(s) 673
BspPI GGATC 3 cut(s) 82, 311, 350
BspQI GCTCTTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 57
BsrI ACTGG 4 cut(s) 47, 287, 486, 494
BssAI RCCGGY 1 cut(s) 57
BssECI CCNNGG 3 cut(s) 69, 170, 462
BssMI GATC 6 cut(s) 87, 316, 342, 533, 670, 676
BssNI GRCGYC 1 cut(s) 153
Bst2UI CCWGG 3 cut(s) 172, 183, 464
Bst6I CTCTTC 3 cut(s) 72, 95, 655
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 129, 179, 271
BstDEI CTNAG 2 cut(s) 258, 582
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 64, 79, 166
BstFNI CGCG 2 cut(s) 119, 504
BstH2I RGCGCY 1 cut(s) 379
BstHHI GCGC 2 cut(s) 121, 378
BstKTI GATC 6 cut(s) 90, 319, 345, 536, 673, 679
BstMAI GTCTC 1 cut(s) 383
BstMBI GATC 6 cut(s) 87, 316, 342, 533, 670, 676
BstNI CCWGG 3 cut(s) 172, 183, 464
BstSCI CCNGG 3 cut(s) 170, 181, 462
BstUI CGCG 2 cut(s) 119, 504
BstV1I GCAGC 4 cut(s) 253, 339, 685, 688
BstV2I GAAGAC 2 cut(s) 148, 429
BsuI GTATCC 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 64, 79, 166
BtsI GCAGTG 1 cut(s) 700
BtsIMutI CAGTG 1 cut(s) 700
Cac8I GCNNGC 3 cut(s) 129, 179, 271
CciI TCATGA 1 cut(s) 673
CfoI GCGC 2 cut(s) 121, 378
Cfr10I RCCGGY 1 cut(s) 57
Cfr13I GGNCC 1 cut(s) 109
CspAI ACCGGT 1 cut(s) 57
CviAII CATG 6 cut(s) 113, 386, 415, 419, 624, 674
CviJI RGCY 8 cut(s) 82, 266, 273, 289, 412, 430, 526, 667
CviKI_1 RGCY 8 cut(s) 82, 266, 273, 289, 412, 430, 526, 667
DdeI CTNAG 2 cut(s) 258, 582
DpnI GATC 6 cut(s) 89, 318, 344, 535, 672, 678
DpnII GATC 6 cut(s) 87, 316, 342, 533, 670, 676
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
Eam1104I CTCTTC 3 cut(s) 72, 95, 655
EarI CTCTTC 3 cut(s) 72, 95, 655
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 170, 181, 462
EcoRV GATATC 1 cut(s) 637
EcoT22I ATGCAT 1 cut(s) 420
FaeI CATG 6 cut(s) 116, 389, 418, 422, 627, 677
FaiI YATR 9 cut(s) 26, 114, 293, 387, 416, 420, 459, 625, 675
FatI CATG 6 cut(s) 112, 385, 414, 418, 623, 673
FbaI TGATCA 1 cut(s) 676
Fnu4HI GCNGC 5 cut(s) 117, 267, 328, 699, 702
FokI GGATG 3 cut(s) 51, 86, 153
Fsp4HI GCNGC 5 cut(s) 117, 267, 328, 699, 702
FspBI CTAG 1 cut(s) 668
GlaI GCGC 2 cut(s) 120, 377
GluI GCNGC 5 cut(s) 117, 267, 328, 699, 702
HaeII RGCGCY 1 cut(s) 379
HapII CCGG 1 cut(s) 58
HhaI GCGC 2 cut(s) 121, 378
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 6 cut(s) 116, 389, 418, 422, 627, 677
Hin6I GCGC 2 cut(s) 119, 376
HinP1I GCGC 2 cut(s) 119, 376
HinfI GANTC 3 cut(s) 391, 574, 580
HpaII CCGG 1 cut(s) 58
HphI GGTGA 2 cut(s) 206, 635
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 4 cut(s) 513, 541, 579, 585
Hpy188III TCNNGA 5 cut(s) 143, 320, 346, 674, 680
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 2 cut(s) 363, 618
HpyCH4IV ACGT 2 cut(s) 153, 353
HpyCH4V TGCA 1 cut(s) 418
HpyF3I CTNAG 2 cut(s) 258, 582
HpySE526I ACGT 2 cut(s) 153, 353
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 6 cut(s) 116, 389, 418, 422, 627, 677
HspAI GCGC 2 cut(s) 119, 376
Ksp22I TGATCA 1 cut(s) 676
Kzo9I GATC 6 cut(s) 87, 316, 342, 533, 670, 676
LguI GCTCTTC 1 cut(s) 72
Lsp1109I GCAGC 4 cut(s) 253, 339, 685, 688
LweI GCATC 2 cut(s) 33, 476
MaeI CTAG 1 cut(s) 668
MaeII ACGT 2 cut(s) 153, 353
MaeIII GTNAC 2 cut(s) 278, 380
MalI GATC 6 cut(s) 89, 318, 344, 535, 672, 678
MboI GATC 6 cut(s) 87, 316, 342, 533, 670, 676
MboII GAAGA 7 cut(s) 52, 89, 112, 148, 429, 603, 642
MluCI AATT 3 cut(s) 8, 309, 709
MlyI GAGTC 3 cut(s) 385, 568, 574
MmeI TCCRAC 2 cut(s) 31, 585
Mph1103I ATGCAT 1 cut(s) 420
MseI TTAA 1 cut(s) 712
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 3 cut(s) 172, 183, 464
MvaI CCWGG 3 cut(s) 172, 183, 464
MvnI CGCG 2 cut(s) 119, 504
NdeII GATC 6 cut(s) 87, 316, 342, 533, 670, 676
NlaIII CATG 6 cut(s) 116, 389, 418, 422, 627, 677
NsiI ATGCAT 1 cut(s) 420
PagI TCATGA 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 72
PflMI CCANNNNNTGG 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 57
PkrI GCNGC 5 cut(s) 118, 268, 329, 700, 703
PleI GAGTC 3 cut(s) 385, 568, 574
PpsI GAGTC 3 cut(s) 385, 568, 574
PsiI TTATAA 1 cut(s) 26
Psp1406I AACGTT 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 170, 181, 462
PspGI CCWGG 3 cut(s) 170, 181, 462
PspPI GGNCC 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 712
SatI GCNGC 5 cut(s) 117, 267, 328, 699, 702
Sau3AI GATC 6 cut(s) 87, 316, 342, 533, 670, 676
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 3 cut(s) 385, 568, 574
ScrFI CCNGG 3 cut(s) 172, 183, 464
SfaNI GCATC 2 cut(s) 33, 476
SinI GGWCC 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 3 cut(s) 8, 309, 709
SsiI CCGC 1 cut(s) 117
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 3 cut(s) 170, 181, 462
TaiI ACGT 2 cut(s) 156, 356
TaqI TCGA 2 cut(s) 406, 629
TasI AATT 3 cut(s) 8, 309, 709
TauI GCSGC 1 cut(s) 119
Tru1I TTAA 1 cut(s) 712
Tru9I TTAA 1 cut(s) 712
TscAI CASTG 1 cut(s) 700
TseI GCWGC 4 cut(s) 266, 327, 698, 701
TspDTI ATGAA 3 cut(s) 53, 90, 435
TspGWI ACGGA 2 cut(s) 45, 86
TspRI CASTG 1 cut(s) 700
Van91I CCANNNNNTGG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 109
XspI CTAG 1 cut(s) 668
ZraI GACGTC 1 cut(s) 154
Zsp2I ATGCAT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.