Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013856

Physical Location & Seq

Genomic Coordinates Reverse (-)

4530643 .. 4533119

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G14040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAATCTCCGAAGAATTCTCTGATCCCGAGCTTCCTCTATTCATCATCTTCATCTCCGAGATCTTTCCTCCTCGACCAGGTGCTCAATTCCAACTCCAACGCTGCATTCGAGAAATCTCCTTCTCCGGCCCCGCGTTCCTCTCCTACGTCGATGATTTCTCGGAAGAATTTCCTTATTGCATCTCCCACCGAGCCAGGGAAGGGGATCGAGATGTATTCACCTGCCTTCTACGCTGCTTGTACCTTTGGTGGAATTCTCAGCTGTGGTCTTACTCACATGACCGTGACTCCTCTCGATCTCGTCAAGTGCAATATGCAGATTGATCCAGCGAAGTACAAGAGCATCTCGTCTGGTTTTGGAATTTTGCTGAAAGAGCAAGGAGTCAAAGGCTTTTTCCGTGGATGGGTTCCTACTCTTTTGGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTCTACGAGTACTTTAAGAAGACTTACTCTGACCTTGCTGGACCTGAGTACACTGCCAAATACAAGACTCTCATCTACCTTGCTGGTTCTGCTTCTGCTGAGATCATTGCCGATATTGCACTTTGCCCATTTGAAGCTGTGAAGGTTCGTGTTCAGACACAGCCTGGATTTGCTAGGGGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTTACACTATGATGAAGTTTGCTTCCTTTGAGACCATTGTTGAGATGATTTACAAGTACGCAATCCCCAACCCAAAGAGTGAGTGCAGCAAAGGTCTGCAACTCGGAGTGAGTTTTGCCGGAGGTTACGTTGCCGGAGTGTTCTGTGCCATCGTTTCTCATCCAGCAGACAATCTAGTGTCATTCCTCAACAACGCTAAGGGAGCAACCGTTGGAGATGCGGTGAAGAAGATTGGTATGGTGGGACTGTTCACAAGAGGGCTTCCTCTTAGAATTGTGATGATCGGGACGTTGACTGGAGCACAGTGGGGATTATACGATGCCTTCAAAGTGTTTGTTGGCCTGCCAACCACTGGTGGTGTTGCTCCAGCTCCTGCCATCGCAGCTACTGAAGCCAAAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

375

Amino Acids

40.09

Weight (kDa)

9.29

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	78 - 162	5.1e-22	Mitochondrial carrier protein
Mito_carr	PF00153	174 - 260	3.4e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14040
fragaria_vesca	FvH4_6g54190
malus_domestica	MD09G1004400.v1.1 MD17G1007900.v1.1
prunus_persica	Prupe.3G312300_v2.0.a1
pyrus_communis	pycom111g00320 pycom17g00340
rosa_chinensis	RchiOBHm_Chr2g0176371
rosa_laevigata	RLG00000022407
rosa_multiflora	Rmu_co8088082.1_g000001 Rmu_sc0009140.1_g000002 Rmu_sc0027060.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076530
rosa_rugosa	Rorug02G0593700
rosa_samantha	Rh2AG672100 Rh2CG646300
rosa_wichuraiana	Rw2G055120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	232
AatII	GACGTC	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	232
AccB1I	GGYRCC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	1076
AccII	CGCG	1 cut(s)	136
AciI	CCGC	2 cut(s)	134, 944
AclWI	GGATC	3 cut(s)	19, 215, 320
AcsI	RAATTY	4 cut(s)	16, 169, 255, 363
AcyI	GRCGYC	1 cut(s)	715
AfaI	GTAC	5 cut(s)	244, 338, 467, 506, 782
AfiI	CCNNNNNNNGG	6 cut(s)	79, 198, 203, 406, 710, 1076
AgsI	TTSAA	2 cut(s)	590, 1051
AjnI	CCWGG	3 cut(s)	78, 196, 619
AjuI	GAANNNNNNNTTGG	2 cut(s)	92, 124
AluBI	AGCT	5 cut(s)	33, 264, 593, 1094, 1109
AluI	AGCT	5 cut(s)	33, 264, 593, 1094, 1109
Alw21I	GWGCWC	3 cut(s)	87, 436, 1027
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	3 cut(s)	19, 215, 320
AlwNI	CAGNNNCTG	2 cut(s)	1097, 1112
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	129, 1063
ApeKI	GCWGC	4 cut(s)	104, 236, 810, 1106
ApoI	RAATTY	4 cut(s)	16, 169, 255, 363
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	130, 497
AsuHPI	GGTGA	2 cut(s)	213, 958
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	3 cut(s)	87, 436, 1027
BbvI	GCAGC	4 cut(s)	91, 223, 822, 1118
BccI	CCATC	4 cut(s)	399, 638, 881, 1109
BciT130I	CCWGG	3 cut(s)	80, 198, 621
BciVI	GTATCC	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	2 cut(s)	630, 899
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	668
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	4 cut(s)	105, 237, 811, 1107
BlsI	GCNGC	4 cut(s)	106, 238, 812, 1108
BmcAI	AGTACT	1 cut(s)	467
Bme1390I	CCNGG	3 cut(s)	80, 198, 621
Bme18I	GGWCC	1 cut(s)	497
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	130, 497
BmiI	GGNNCC	3 cut(s)	132, 411, 442
BmrFI	CCNGG	3 cut(s)	80, 198, 621
BmsI	GCATC	4 cut(s)	191, 354, 931, 1033
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	2 cut(s)	1041, 1074
Bpu10I	CCTNAGC	2 cut(s)	435, 921
BsaHI	GRCGYC	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	197, 400
BsaXI	ACNNNNNCTCC	8 cut(s)	274, 304, 837, 867, 918, 930, 948, 960
Bsc4I	CCNNNNNNNGG	6 cut(s)	79, 198, 203, 406, 710, 1076
Bse1I	ACTGG	2 cut(s)	1024, 1081
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	3 cut(s)	80, 198, 621
BseDI	CCNNGG	2 cut(s)	197, 400
BseGI	GGATG	3 cut(s)	410, 642, 883
BseLI	CCNNNNNNNGG	6 cut(s)	79, 198, 203, 406, 710, 1076
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	4 cut(s)	274, 449, 492, 546
BseNI	ACTGG	2 cut(s)	1024, 1081
BseRI	GAGGAG	2 cut(s)	62, 282
BseXI	GCAGC	4 cut(s)	91, 223, 822, 1118
BsgI	GTGCAG	1 cut(s)	829
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	131, 1065
BshNI	GGYRCC	1 cut(s)	440
BsiHKAI	GWGCWC	3 cut(s)	87, 436, 1027
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	3 cut(s)	128, 843, 858
BslFI	GGGAC	3 cut(s)	726, 981, 1024
BslI	CCNNNNNNNGG	6 cut(s)	79, 198, 203, 406, 710, 1076
BsmAI	GTCTC	1 cut(s)	749
BsmFI	GGGAC	3 cut(s)	726, 981, 1024
BsmI	GAATGC	1 cut(s)	107
BsnI	GGCC	2 cut(s)	131, 1065
Bso31I	GGTCTC	1 cut(s)	749
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	87, 436, 1027
Bsp143I	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
BspACI	CCGC	2 cut(s)	134, 944
BspANI	GGCC	2 cut(s)	131, 1065
BspCNI	CTCAG	4 cut(s)	273, 448, 493, 547
BspFNI	CGCG	1 cut(s)	136
BspLI	GGNNCC	3 cut(s)	132, 411, 442
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	3 cut(s)	19, 215, 320
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	2 cut(s)	1024, 1081
BssECI	CCNNGG	2 cut(s)	197, 400
BssMI	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
BssNI	GRCGYC	1 cut(s)	715
Bst2UI	CCWGG	3 cut(s)	80, 198, 621
Bst4CI	ACNGT	5 cut(s)	286, 431, 934, 972, 1029
BstACI	GRCGYC	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	445, 1067
BstDEI	CTNAG	6 cut(s)	260, 435, 501, 555, 921, 992
BstDSI	CCRYGG	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	410, 642, 883
BstFNI	CGCG	1 cut(s)	136
BstKTI	GATC	7 cut(s)	27, 65, 210, 301, 328, 561, 1008
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 376, 440, 545, 572, 926, 1106, 1115
BstNI	CCWGG	3 cut(s)	80, 198, 621
BstSCI	CCNGG	3 cut(s)	78, 196, 619
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	4 cut(s)	91, 223, 822, 1118
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BsuI	GTATCC	1 cut(s)	668
BsuRI	GGCC	2 cut(s)	131, 1065
BtgI	CCRYGG	1 cut(s)	400
BtgZI	GCGATG	1 cut(s)	1087
BtsCI	GGATG	3 cut(s)	410, 642, 883
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	4 cut(s)	436, 507, 1034, 1074
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	2 cut(s)	445, 1067
CaiI	CAGNNNCTG	2 cut(s)	1097, 1112
Cfr13I	GGNCC	2 cut(s)	130, 497
CsiI	ACCWGGT	1 cut(s)	78
Csp6I	GTAC	5 cut(s)	243, 337, 466, 505, 781
CviAII	CATG	1 cut(s)	280
CviQI	GTAC	5 cut(s)	243, 337, 466, 505, 781
DdeI	CTNAG	6 cut(s)	260, 435, 501, 555, 921, 992
DpnI	GATC	7 cut(s)	26, 64, 209, 300, 327, 560, 1007
DpnII	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoRI	GAATTC	2 cut(s)	16, 255
EcoRII	CCWGG	3 cut(s)	78, 196, 619
FaeI	CATG	1 cut(s)	283
FaiI	YATR	6 cut(s)	281, 317, 690, 734, 962, 1039
FaqI	GGGAC	3 cut(s)	726, 981, 1024
FatI	CATG	1 cut(s)	279
FauI	CCCGC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	105, 237, 811, 1107
FokI	GGATG	3 cut(s)	417, 649, 870
Fsp4HI	GCNGC	4 cut(s)	105, 237, 811, 1107
FspBI	CTAG	2 cut(s)	630, 899
GluI	GCNGC	4 cut(s)	105, 237, 811, 1107
GsuI	CTGGAG	2 cut(s)	1041, 1074
HaeIII	GGCC	2 cut(s)	131, 1065
HapII	CCGG	3 cut(s)	128, 843, 858
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HinfI	GANTC	6 cut(s)	5, 289, 384, 456, 523, 721
HpaII	CCGG	3 cut(s)	128, 843, 858
HphI	GGTGA	2 cut(s)	213, 958
Hpy166II	GTNNAC	3 cut(s)	507, 975, 1017
Hpy188III	TCNNGA	5 cut(s)	28, 112, 211, 296, 1009
Hpy8I	GTNNAC	3 cut(s)	507, 975, 1017
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	6 cut(s)	132, 196, 238, 592, 665, 1057
HpyCH4III	ACNGT	5 cut(s)	286, 431, 934, 972, 1029
HpyCH4IV	ACGT	4 cut(s)	149, 715, 852, 1013
HpyCH4V	TGCA	8 cut(s)	107, 182, 312, 319, 447, 575, 810, 823
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 376, 440, 545, 572, 926, 1106, 1115
HpyF3I	CTNAG	6 cut(s)	260, 435, 501, 555, 921, 992
HpySE526I	ACGT	4 cut(s)	149, 715, 852, 1013
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	1 cut(s)	283
Kzo9I	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
LmnI	GCTCC	5 cut(s)	706, 926, 1022, 1093, 1099
Lsp1109I	GCAGC	4 cut(s)	91, 223, 822, 1118
LweI	GCATC	4 cut(s)	191, 354, 931, 1033
MabI	ACCWGGT	1 cut(s)	78
MaeI	CTAG	2 cut(s)	630, 899
MaeII	ACGT	4 cut(s)	149, 715, 852, 1013
MaeIII	GTNAC	3 cut(s)	286, 425, 848
MalI	GATC	7 cut(s)	26, 64, 209, 300, 327, 560, 1007
MboI	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
MboII	GAAGA	6 cut(s)	25, 42, 178, 487, 961, 964
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	3 cut(s)	87, 436, 1027
MluCI	AATT	6 cut(s)	16, 88, 169, 255, 363, 996
MlyI	GAGTC	3 cut(s)	283, 393, 517
MmeI	TCCRAC	3 cut(s)	117, 123, 916
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	2 cut(s)	284, 734
MspA1I	CMGCKG	1 cut(s)	264
MspI	CCGG	3 cut(s)	128, 843, 858
MspR9I	CCNGG	3 cut(s)	80, 198, 621
Mva1269I	GAATGC	1 cut(s)	107
MvaI	CCWGG	3 cut(s)	80, 198, 621
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	8 cut(s)	233, 376, 440, 545, 572, 926, 1106, 1115
NdeII	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	3 cut(s)	132, 411, 442
NmuCI	GTSAC	1 cut(s)	286
PaqCI	CACCTGC	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	5, 456, 721
PflMI	CCANNNNNTGG	1 cut(s)	1076
PkrI	GCNGC	4 cut(s)	106, 238, 812, 1108
PleI	GAGTC	3 cut(s)	283, 392, 517
PpsI	GAGTC	3 cut(s)	283, 392, 517
Psp6I	CCWGG	3 cut(s)	78, 196, 619
PspGI	CCWGG	3 cut(s)	78, 196, 619
PspN4I	GGNNCC	3 cut(s)	132, 411, 442
PspPI	GGNCC	2 cut(s)	130, 497
PstNI	CAGNNNCTG	2 cut(s)	1097, 1112
PsuI	RGATCY	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	5 cut(s)	244, 338, 467, 506, 782
RsaNI	GTAC	5 cut(s)	243, 337, 466, 505, 781
RseI	CAYNNNNRTG	2 cut(s)	284, 734
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	4 cut(s)	105, 237, 811, 1107
Sau3AI	GATC	7 cut(s)	24, 62, 207, 298, 325, 558, 1005
Sau96I	GGNCC	2 cut(s)	130, 497
ScaI	AGTACT	1 cut(s)	467
SchI	GAGTC	3 cut(s)	283, 393, 517
ScrFI	CCNGG	3 cut(s)	80, 198, 621
SduI	GDGCHC	3 cut(s)	87, 436, 1027
SexAI	ACCWGGT	1 cut(s)	78
SfaNI	GCATC	4 cut(s)	191, 354, 931, 1033
SinI	GGWCC	1 cut(s)	497
SmiMI	CAYNNNNRTG	2 cut(s)	284, 734
Sse9I	AATT	6 cut(s)	16, 88, 169, 255, 363, 996
SsiI	CCGC	2 cut(s)	134, 944
SspMI	CTAG	2 cut(s)	630, 899
StyD4I	CCNGG	3 cut(s)	78, 196, 619
TaaI	ACNGT	5 cut(s)	286, 431, 934, 972, 1029
TaiI	ACGT	4 cut(s)	152, 718, 855, 1016
TaqI	TCGA	5 cut(s)	75, 111, 152, 210, 297
TasI	AATT	6 cut(s)	16, 88, 169, 255, 363, 996
TatI	WGTACW	3 cut(s)	336, 465, 504
TfiI	GAWTC	3 cut(s)	5, 456, 721
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	4 cut(s)	436, 514, 1034, 1081
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	4 cut(s)	104, 236, 810, 1106
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	3 cut(s)	33, 42, 752
TspGWI	ACGGA	2 cut(s)	389, 693
TspRI	CASTG	4 cut(s)	436, 514, 1034, 1081
Van91I	CCANNNNNTGG	1 cut(s)	1076
VpaK11BI	GGWCC	1 cut(s)	497
XagI	CCTNNNNNAGG	1 cut(s)	77
XapI	RAATTY	4 cut(s)	16, 169, 255, 363
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	630, 899
ZraI	GACGTC	1 cut(s)	716
ZrmI	AGTACT	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.