RLG00000022407

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
83154110 .. 83156876
2767 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022407

Sequence Viewer

Length: 1122 bp
ATGGATCTCACTGAGAAATCCTCCCGTCAGTCTCTGATCCCTGGCTTCCTCTACGCCTCCTCCTCCGCCAAAACTTTTGGGCTCGAGAAGATGCTTCACGCCAGCCCTAGCGCCGCCTTCAACACGAATGTGGAGGCAGTCTCGCAGGCCACGGGTTTGGTCATTCCGTCTCCGACGGAGCCTTCGAAGAAGATCGAGATGTACTCGCCTGCCTTCTATGCTGCTTGCACTGCAGGAGGAATCCTCAGCTGTGGTCTCACTCACATGGCCGTCACTCCTCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCTACAAAGTACAAAAGCATTTCTTCTGGTTTTGGAGTTCTGCTCAAGGAGCAGGGTGTTAGAGGATTCTTCAAGGGATGGGTGCCCACCCTCCTTGGTTACAGCGGTCAAGGTGCCTGCAAGTTCGGGTTCTATGAGTTTTTCAAGAAGTACTACTCTGACCTTGCTGGACCAGAGTTTACTGCCAAGTACAAGACTTTGATCTACCTCGCTGGTTCTGCATCTGCTGAGGTGATTGCAGATGTTGCACTATGCCCCTTTGAGGCAGTGAAGGTCAGGGTACAAACTCAGCCTGGATTTGCCAGGGGTTTGTCAGATGGACTTCCCAAGTTTGTCAAATCTGAAGGTGCACTTGGGTTGTACAAGGGTATTGTTCCACTATGGGGTCGCCAAATTCCATACACAATGATGAAATTTGCATCCTTTGAGACCATTGTGGAGAATATCTATAAATATGCCATCCCTAGACCTAAGGATGAGTGCTCCAAAAGTTTGCAGCTGGGTGTGAGTTTTGCTGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTGTCTCACCCTGCTGACAATCTCGTCTCTTTTCTCAACAATGCCAAAGGGGCAACTGTTGGTGATGCTGTGAAGAAGATTGGAGTGTTGGGTCTGTTTACCCGTGGGCTTCCCCTCCGTATTGTCATGATTGGAACTCTTACCGGAGCTCAGTGGGGTATCTACGATGCATTCAAAGTTTTTGTTGGACTGCCGACCACCGGTGGTGTCACTCCTCCTCCGGCTGCTGCTGGTGCTGCCTCAGAGCTTGCAAAGGTCTGA

Protein Analysis

374

Amino Acids

39.63

Weight (kDa)

9.18

Isoelectric Point (pI)

36.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 73 - 157 1.7e-22 Mitochondrial carrier protein
Mito_carr PF00153 169 - 255 5.9e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013856)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
AccB1I GGYRCC 2 cut(s) 394, 425
AciI CCGC 3 cut(s) 66, 114, 417
AclWI GGATC 3 cut(s) 12, 31, 305
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 2 cut(s) 705, 725
AcuI CTGAAG 1 cut(s) 675
AfaI GTAC 6 cut(s) 203, 323, 464, 503, 594, 674
AfiI CCNNNNNNNGG 3 cut(s) 574, 695, 1061
AgeI ACCGGT 1 cut(s) 1061
AgsI TTSAA 4 cut(s) 121, 385, 457, 1036
AjnI CCWGG 3 cut(s) 40, 604, 614
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 4 cut(s) 249, 811, 1010, 1108
AluI AGCT 4 cut(s) 249, 811, 1010, 1108
Alw21I GWGCWC 3 cut(s) 664, 797, 1012
Alw26I GTCTC 7 cut(s) 36, 145, 174, 260, 734, 870, 892
Alw44I GTGCAC 1 cut(s) 660
AlwI GGATC 3 cut(s) 12, 31, 305
AlwNI CAGNNNCTG 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 147, 267
ApaLI GTGCAC 1 cut(s) 660
ApeKI GCWGC 5 cut(s) 221, 808, 1085, 1088, 1097
ApoI RAATTY 2 cut(s) 705, 725
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AsiGI ACCGGT 1 cut(s) 1061
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 482
AsuHPI GGTGA 3 cut(s) 556, 860, 935
AsuII TTCGAA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 482
AxyI CCTNAGG 1 cut(s) 783
BaeGI GKGCMC 2 cut(s) 399, 664
BanI GGYRCC 2 cut(s) 394, 425
BanII GRGCYC 2 cut(s) 84, 1012
Bbv12I GWGCWC 3 cut(s) 664, 797, 1012
BbvCI CCTCAGC 2 cut(s) 245, 540
BbvI GCAGC 5 cut(s) 208, 820, 1072, 1075, 1084
BccI CCATC 3 cut(s) 384, 623, 779
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 3 cut(s) 42, 606, 616
BcoDI GTCTC 7 cut(s) 36, 145, 174, 260, 734, 870, 892
BfaI CTAG 2 cut(s) 108, 777
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 114
BglI GCCNNNNNGGC 1 cut(s) 911
BisI GCNGC 6 cut(s) 114, 222, 809, 1086, 1089, 1098
BlsI GCNGC 6 cut(s) 115, 223, 810, 1087, 1090, 1099
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 42, 606, 616
Bme18I GGWCC 1 cut(s) 482
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 482
BmiI GGNNCC 3 cut(s) 180, 396, 427
BmrFI CCNGG 3 cut(s) 42, 606, 616
BmsI GCATC 5 cut(s) 81, 542, 740, 916, 1018
BplI GAGNNNNNCTC 9 cut(s) 37, 125, 157, 188, 220, 228, 260, 339, 371
Bpu10I CCTNAGC 2 cut(s) 245, 540
Bpu14I TTCGAA 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 341
BsaI GGTCTC 2 cut(s) 260, 734
BsaJI CCNNGG 5 cut(s) 40, 150, 406, 615, 964
BsaWI WCCGGW 2 cut(s) 1004, 1061
BsaXI ACNNNNNCTCC 4 cut(s) 44, 74, 1063, 1093
Bsc4I CCNNNNNNNGG 3 cut(s) 574, 695, 1061
Bse118I RCCGGY 1 cut(s) 1061
Bse21I CCTNAGG 1 cut(s) 783
BseBI CCWGG 3 cut(s) 42, 606, 616
BseDI CCNNGG 5 cut(s) 40, 150, 406, 615, 964
BseGI GGATG 4 cut(s) 395, 731, 771, 793
BseLI CCNNNNNNNGG 3 cut(s) 574, 695, 1061
BseMII CTCAG 5 cut(s) 259, 531, 614, 1025, 1116
BseRI GAGGAG 5 cut(s) 49, 52, 267, 1065, 1068
BseSI GKGCMC 2 cut(s) 399, 664
BseXI GCAGC 5 cut(s) 208, 820, 1072, 1075, 1084
BseYI CCCAGC 1 cut(s) 811
BshFI GGCC 2 cut(s) 149, 269
BshNI GGYRCC 2 cut(s) 394, 425
BshTI ACCGGT 1 cut(s) 1061
BsiHKAI GWGCWC 3 cut(s) 664, 797, 1012
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 3 cut(s) 1005, 1062, 1082
BslI CCNNNNNNNGG 3 cut(s) 574, 695, 1061
BsmAI GTCTC 7 cut(s) 36, 145, 174, 260, 734, 870, 892
BsmBI CGTCTC 2 cut(s) 174, 892
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 2 cut(s) 149, 269
Bso31I GGTCTC 2 cut(s) 260, 734
BsoBI CYCGRG 1 cut(s) 83
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 5 cut(s) 84, 399, 664, 797, 1012
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 5 cut(s) 4, 36, 192, 310, 513
BspACI CCGC 3 cut(s) 66, 114, 417
BspANI GGCC 2 cut(s) 149, 269
BspCNI CTCAG 6 cut(s) 4, 258, 532, 613, 1024, 1115
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 3 cut(s) 180, 396, 427
BspMAI CTGCAG 1 cut(s) 235
BspPI GGATC 3 cut(s) 12, 31, 305
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 2 cut(s) 394, 425
BspTNI GGTCTC 2 cut(s) 260, 734
BsrFI RCCGGY 1 cut(s) 1061
BsrGI TGTACA 1 cut(s) 672
BssAI RCCGGY 1 cut(s) 1061
BssECI CCNNGG 5 cut(s) 40, 150, 406, 615, 964
BssMI GATC 5 cut(s) 4, 36, 192, 310, 513
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 3 cut(s) 42, 606, 616
Bst4CI ACNGT 1 cut(s) 919
BstAPI GCANNNNNTGC 1 cut(s) 557
BstAUI TGTACA 1 cut(s) 672
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 6 cut(s) 103, 147, 210, 226, 430, 1110
BstDEI CTNAG 7 cut(s) 12, 245, 540, 600, 783, 1011, 1102
BstDSI CCRYGG 2 cut(s) 150, 964
BstF5I GGATG 4 cut(s) 395, 731, 771, 793
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 7, 39, 195, 313, 516
BstMAI GTCTC 7 cut(s) 36, 145, 174, 260, 734, 870, 892
BstMBI GATC 5 cut(s) 4, 36, 192, 310, 513
BstMWI GCNNNNNNNGC 8 cut(s) 218, 230, 361, 530, 557, 911, 1094, 1097
BstNI CCWGG 3 cut(s) 42, 606, 616
BstSCI CCNGG 3 cut(s) 40, 604, 614
BstSFI CTRYAG 1 cut(s) 231
BstSLI GKGCMC 2 cut(s) 399, 664
BstV1I GCAGC 5 cut(s) 208, 820, 1072, 1075, 1084
BstX2I RGATCY 1 cut(s) 4
BstXI CCANNNNNNTGG 1 cut(s) 157
BstYI RGATCY 1 cut(s) 4
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 2 cut(s) 149, 269
BtgI CCRYGG 2 cut(s) 150, 964
BtsCI GGATG 4 cut(s) 395, 731, 771, 793
BtsI GCAGTG 2 cut(s) 228, 585
BtsIMutI CAGTG 4 cut(s) 9, 228, 585, 1019
Cac8I GCNNGC 6 cut(s) 103, 147, 210, 226, 430, 1110
CaiI CAGNNNCTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 987
CfoI GCGC 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 1061
Cfr13I GGNCC 1 cut(s) 482
Csp6I GTAC 6 cut(s) 202, 322, 463, 502, 593, 673
CspAI ACCGGT 1 cut(s) 1061
CspCI CAANNNNNGTGG 2 cut(s) 388, 423
CviAII CATG 2 cut(s) 265, 988
CviQI GTAC 6 cut(s) 202, 322, 463, 502, 593, 673
DdeI CTNAG 7 cut(s) 12, 245, 540, 600, 783, 1011, 1102
DpnI GATC 5 cut(s) 6, 38, 194, 312, 515
DpnII GATC 5 cut(s) 4, 36, 192, 310, 513
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 267
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 1010
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 84, 1012
Eco31I GGTCTC 2 cut(s) 260, 734
Eco47I GGWCC 1 cut(s) 482
Eco53kI GAGCTC 1 cut(s) 1010
Eco57I CTGAAG 1 cut(s) 675
Eco81I CCTNAGG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 1010
EcoRII CCWGG 3 cut(s) 40, 604, 614
EcoT14I CCWWGG 1 cut(s) 406
EcoT22I ATGCAT 1 cut(s) 1033
EcoT38I GRGCYC 2 cut(s) 84, 1012
ErhI CCWWGG 1 cut(s) 406
Esp3I CGTCTC 2 cut(s) 174, 892
FaeI CATG 2 cut(s) 268, 991
FalI AAGNNNNNCTT 4 cut(s) 319, 351, 648, 680
FatI CATG 2 cut(s) 264, 987
Fnu4HI GCNGC 6 cut(s) 114, 222, 809, 1086, 1089, 1098
FokI GGATG 4 cut(s) 402, 718, 758, 800
FriOI GRGCYC 2 cut(s) 84, 1012
Fsp4HI GCNGC 6 cut(s) 114, 222, 809, 1086, 1089, 1098
FspBI CTAG 2 cut(s) 108, 777
GlaI GCGC 1 cut(s) 112
GluI GCNGC 6 cut(s) 114, 222, 809, 1086, 1089, 1098
GsaI CCCAGC 1 cut(s) 815
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 149, 269
HapII CCGG 3 cut(s) 1005, 1062, 1082
HhaI GCGC 1 cut(s) 113
Hin1II CATG 2 cut(s) 268, 991
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 240, 378
HpaII CCGG 3 cut(s) 1005, 1062, 1082
HphI GGTGA 3 cut(s) 556, 860, 935
Hpy166II GTNNAC 3 cut(s) 492, 662, 960
Hpy188I TCNGA 7 cut(s) 36, 174, 472, 628, 655, 1105, 1121
Hpy188III TCNNGA 5 cut(s) 85, 196, 281, 457, 988
Hpy8I GTNNAC 3 cut(s) 492, 662, 960
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 5 cut(s) 127, 192, 223, 577, 650
HpyCH4III ACNGT 1 cut(s) 919
HpyF10VI GCNNNNNNNGC 8 cut(s) 218, 230, 361, 530, 557, 911, 1094, 1097
HpyF3I CTNAG 7 cut(s) 12, 245, 540, 600, 783, 1011, 1102
Hsp92II CATG 2 cut(s) 268, 991
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 5 cut(s) 4, 36, 192, 310, 513
LmnI GCTCC 4 cut(s) 178, 361, 800, 1007
Lsp1109I GCAGC 5 cut(s) 208, 820, 1072, 1075, 1084
LweI GCATC 5 cut(s) 81, 542, 740, 916, 1018
MaeI CTAG 2 cut(s) 108, 777
MaeIII GTNAC 3 cut(s) 271, 410, 1069
MalI GATC 5 cut(s) 6, 38, 194, 312, 515
MboI GATC 5 cut(s) 4, 36, 192, 310, 513
MboII GAAGA 7 cut(s) 100, 199, 202, 327, 373, 946, 949
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 5 cut(s) 84, 399, 664, 797, 1012
MluCI AATT 2 cut(s) 705, 725
MmeI TCCRAC 2 cut(s) 197, 1027
Mph1103I ATGCAT 1 cut(s) 1033
MslI CAYNNNNRTG 3 cut(s) 128, 263, 719
MspA1I CMGCKG 3 cut(s) 249, 417, 811
MspI CCGG 3 cut(s) 1005, 1062, 1082
MspR9I CCNGG 3 cut(s) 42, 606, 616
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 3 cut(s) 42, 606, 616
MwoI GCNNNNNNNGC 8 cut(s) 218, 230, 361, 530, 557, 911, 1094, 1097
NdeII GATC 5 cut(s) 4, 36, 192, 310, 513
NlaIII CATG 2 cut(s) 268, 991
NlaIV GGNNCC 3 cut(s) 180, 396, 427
NmuCI GTSAC 2 cut(s) 271, 1069
NsiI ATGCAT 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 128
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 987
PcsI WCGNNNNNNNCGW 1 cut(s) 182
PctI GAATGC 1 cut(s) 1031
PfeI GAWTC 2 cut(s) 240, 378
PflFI GACNNNGTC 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 1061
PkrI GCNGC 6 cut(s) 115, 223, 810, 1087, 1090, 1099
Psp124BI GAGCTC 1 cut(s) 1012
Psp6I CCWGG 3 cut(s) 40, 604, 614
PspFI CCCAGC 1 cut(s) 811
PspGI CCWGG 3 cut(s) 40, 604, 614
PspN4I GGNNCC 3 cut(s) 180, 396, 427
PspPI GGNCC 1 cut(s) 482
PstI CTGCAG 1 cut(s) 235
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 2 cut(s) 249, 811
RsaI GTAC 6 cut(s) 203, 323, 464, 503, 594, 674
RsaNI GTAC 6 cut(s) 202, 322, 463, 502, 593, 673
RseI CAYNNNNRTG 3 cut(s) 128, 263, 719
SacI GAGCTC 1 cut(s) 1012
SatI GCNGC 6 cut(s) 114, 222, 809, 1086, 1089, 1098
Sau3AI GATC 5 cut(s) 4, 36, 192, 310, 513
Sau96I GGNCC 1 cut(s) 482
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 42, 606, 616
SduI GDGCHC 5 cut(s) 84, 399, 664, 797, 1012
SfaNI GCATC 5 cut(s) 81, 542, 740, 916, 1018
SfcI CTRYAG 1 cut(s) 231
Sfr274I CTCGAG 1 cut(s) 83
SfuI TTCGAA 1 cut(s) 185
SgrAI CRCCGGYG 1 cut(s) 1061
SinI GGWCC 1 cut(s) 482
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 3 cut(s) 128, 263, 719
SmlI CTYRAG 2 cut(s) 83, 356
SmoI CTYRAG 2 cut(s) 83, 356
Sse9I AATT 2 cut(s) 705, 725
SsiI CCGC 3 cut(s) 66, 114, 417
SspMI CTAG 2 cut(s) 108, 777
SstI GAGCTC 1 cut(s) 1012
StyD4I CCNGG 3 cut(s) 40, 604, 614
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 919
TaqI TCGA 3 cut(s) 84, 185, 195
TasI AATT 2 cut(s) 705, 725
TatI WGTACW 5 cut(s) 201, 321, 462, 501, 672
TauI GCSGC 1 cut(s) 116
TfiI GAWTC 2 cut(s) 240, 378
TscAI CASTG 4 cut(s) 16, 235, 585, 1019
TseFI GTSAC 2 cut(s) 271, 1069
TseI GCWGC 5 cut(s) 221, 808, 1085, 1088, 1097
Tsp45I GTSAC 2 cut(s) 271, 1069
TspDTI ATGAA 1 cut(s) 737
TspGWI ACGGA 3 cut(s) 156, 191, 968
TspRI CASTG 4 cut(s) 16, 235, 585, 1019
Tth111I GACNNNGTC 1 cut(s) 287
VneI GTGCAC 1 cut(s) 660
VpaK11BI GGWCC 1 cut(s) 482
XapI RAATTY 2 cut(s) 705, 725
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 2 cut(s) 108, 777
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.