FvH4_6g54190

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
39612440 .. 39615291
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g54190.t1

Sequence Viewer

Length: 1140 bp
ATGGATCTCTCTGAGAAATCCTCCCGTCAGTCTCTGATCCCTAGCTTCCTCTACTCCTCATCCTCCGCCAAAACCTTTGGCCTCGAGAAGATGCTTCACGCCACCCCTACCGCCGTCGCCGCCGGCTTCAACACCAATGTCGACGCCGTCTCTCAGTCCAAGGGTTTCGTCATCCCGGCTCCGTCCGAGCCCGCCAAGAAGATCGAGATGTACTCGCCGGCCTTCTACGCTGCTTGTACTGCTGGTGGAATCCTCAGCTGCGGTCTCACTCACATGGCCGTCACTCCTCTTGATCTCGTCAAGTGCAATATGCAGATTGATCCTACAAAGTACAAAAGCATCTCTTCTGGTTTTGGAATTCTGTTCAAGGAGCAGGGTGTTAGAGGATTCTTCAAGGGATGGGTGCCTACCCTCCTTGGTTACAGTGGCCAAGGTGCCTGCAAGTTTGGGTTCTATGAGTTTTTCAAGAAGTACTACTCTGACCTTGCTGGACCAGAGTTTACTGCCAAGTACAAGACTTTGATCTACCTTGCTGGTTCTGCATCTGCTGAGGTGATTGCAGATATTGCACTATGCCCCTTTGAGGCAGTGAAGGTCAGGGTGCAAACTCAGCCTGGATTTGCCAGGGGTTTGTCTGATGGACTTCCAAAGTTTGTCAAATCTGAAGGCGCTCTTGGGTTGTACAAGGGTATTGTTCCACTATGGGGTCGCCAAATTCCATACACAATGATGAAGTTTGCATCCTTTGAGGCCATTGTGGAGAATATCTATAAATATGCCATCCCCAGACCCAAGGATGAGTGCTCCAAAAGTTTGCAGCTGGGTGTGAGTTTCGCTGGTGGATATGTCGCCGGAGTTTTCTGTGCTATTGTTTCTCACCCTGCTGACAATCTTGTCTCTTTTCTCAACAATGCCAAAGGGGCAACTGTTGGTGATGCTGTGAAGAAGATTGGGGTGGTTGGTCTGTTTACCCGTGGGCTTCCCCTCCGTATTGTCATGATTGGAACTCTTACTGGAGCTCAGTGGGGTATCTACGATGCCTTCAAAGTTTTTGTTGGACTGCCGACCACTGGTGGTGTTACTCCTCCTCCATCTGCTGCTGTGGCTGCTGGTGTCGCCTCAGAGCTTGCAAAGGTCTGA

Protein Analysis

380

Amino Acids

40.24

Weight (kDa)

9.23

Isoelectric Point (pI)

35.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 76 - 160 3e-22 Mitochondrial carrier protein
Mito_carr PF00153 172 - 258 1.2e-17 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013856)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 893
AccB1I GGYRCC 2 cut(s) 403, 434
AccI GTMKAC 1 cut(s) 141
AciI CCGC 5 cut(s) 66, 111, 120, 192, 261
AclWI GGATC 3 cut(s) 12, 31, 314
AcoI YGGCCR 2 cut(s) 276, 427
AcsI RAATTY 2 cut(s) 357, 714
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 6 cut(s) 212, 238, 332, 473, 512, 683
AfiI CCNNNNNNNGG 3 cut(s) 583, 704, 1070
AgsI TTSAA 5 cut(s) 130, 367, 394, 466, 1045
AjnI CCWGG 2 cut(s) 613, 623
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
AluBI AGCT 5 cut(s) 45, 258, 820, 1019, 1126
AluI AGCT 5 cut(s) 45, 258, 820, 1019, 1126
Alw21I GWGCWC 2 cut(s) 806, 1021
Alw26I GTCTC 4 cut(s) 36, 154, 269, 901
AlwI GGATC 3 cut(s) 12, 31, 314
AlwNI CAGNNNCTG 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 5 cut(s) 79, 219, 276, 427, 750
ApeKI GCWGC 5 cut(s) 230, 258, 817, 1097, 1106
ApoI RAATTY 2 cut(s) 357, 714
AspLEI GCGC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 3 cut(s) 565, 869, 944
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 491
BalI TGGCCA 1 cut(s) 429
BanI GGYRCC 2 cut(s) 403, 434
BanII GRGCYC 2 cut(s) 192, 1021
Bbv12I GWGCWC 2 cut(s) 806, 1021
BbvCI CCTCAGC 2 cut(s) 254, 549
BbvI GCAGC 5 cut(s) 217, 245, 829, 1084, 1093
BccI CCATC 4 cut(s) 393, 632, 788, 1099
BceAI ACGGC 3 cut(s) 98, 131, 263
BciT130I CCWGG 2 cut(s) 615, 625
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 4 cut(s) 36, 154, 269, 901
BfaI CTAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 672
BglI GCCNNNNNGGC 1 cut(s) 920
BisI GCNGC 6 cut(s) 120, 231, 259, 818, 1098, 1107
BlsI GCNGC 6 cut(s) 121, 232, 260, 819, 1099, 1108
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 3 cut(s) 176, 615, 625
Bme18I GGWCC 1 cut(s) 491
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 3 cut(s) 180, 405, 436
BmrFI CCNGG 3 cut(s) 176, 615, 625
BmsI GCATC 6 cut(s) 81, 348, 551, 749, 925, 1027
BplI GAGNNNNNCTC 3 cut(s) 37, 197, 229
BpmI CTGGAG 1 cut(s) 1035
Bpu10I CCTNAGC 2 cut(s) 254, 549
BpuMI CCSGG 1 cut(s) 176
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 269
BsaJI CCNNGG 6 cut(s) 159, 415, 430, 624, 792, 973
BsaXI ACNNNNNCTCC 2 cut(s) 1072, 1102
Bsc4I CCNNNNNNNGG 3 cut(s) 583, 704, 1070
Bse118I RCCGGY 2 cut(s) 122, 217
Bse1I ACTGG 2 cut(s) 1018, 1075
BseBI CCWGG 2 cut(s) 615, 625
BseDI CCNNGG 6 cut(s) 159, 415, 430, 624, 792, 973
BseGI GGATG 6 cut(s) 59, 171, 404, 740, 780, 802
BseLI CCNNNNNNNGG 3 cut(s) 583, 704, 1070
BseMII CTCAG 6 cut(s) 167, 268, 540, 623, 1034, 1134
BseNI ACTGG 2 cut(s) 1018, 1075
BseRI GAGGAG 4 cut(s) 46, 276, 1074, 1077
BseXI GCAGC 5 cut(s) 217, 245, 829, 1084, 1093
BseYI CCCAGC 1 cut(s) 820
BshFI GGCC 5 cut(s) 81, 221, 278, 429, 752
BshNI GGYRCC 2 cut(s) 403, 434
BsiHKAI GWGCWC 2 cut(s) 806, 1021
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 4 cut(s) 123, 176, 218, 852
BslI CCNNNNNNNGG 3 cut(s) 583, 704, 1070
BsmAI GTCTC 4 cut(s) 36, 154, 269, 901
BsmBI CGTCTC 1 cut(s) 154
BsnI GGCC 5 cut(s) 81, 221, 278, 429, 752
Bso31I GGTCTC 1 cut(s) 269
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 3 cut(s) 192, 806, 1021
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 6 cut(s) 4, 36, 201, 292, 319, 522
BspACI CCGC 5 cut(s) 66, 111, 120, 192, 261
BspANI GGCC 5 cut(s) 81, 221, 278, 429, 752
BspCNI CTCAG 7 cut(s) 4, 166, 267, 541, 622, 1033, 1133
BspHI TCATGA 1 cut(s) 996
BspLI GGNNCC 3 cut(s) 180, 405, 436
BspPI GGATC 3 cut(s) 12, 31, 314
BspT107I GGYRCC 2 cut(s) 403, 434
BspTNI GGTCTC 1 cut(s) 269
BsrFI RCCGGY 2 cut(s) 122, 217
BsrGI TGTACA 1 cut(s) 681
BsrI ACTGG 2 cut(s) 1018, 1075
BssAI RCCGGY 2 cut(s) 122, 217
BssECI CCNNGG 6 cut(s) 159, 415, 430, 624, 792, 973
BssMI GATC 6 cut(s) 4, 36, 201, 292, 319, 522
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 4 cut(s) 159, 415, 430, 792
Bst2UI CCWGG 2 cut(s) 615, 625
Bst4CI ACNGT 2 cut(s) 425, 928
Bst6I CTCTTC 1 cut(s) 349
BstACI GRCGYC 1 cut(s) 144
BstAPI GCANNNNNTGC 1 cut(s) 566
BstAUI TGTACA 1 cut(s) 681
BstC8I GCNNGC 5 cut(s) 124, 192, 219, 439, 1128
BstDEI CTNAG 7 cut(s) 12, 153, 254, 549, 609, 1020, 1120
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 6 cut(s) 59, 171, 404, 740, 780, 802
BstH2I RGCGCY 1 cut(s) 672
BstHHI GCGC 1 cut(s) 671
BstKTI GATC 6 cut(s) 7, 39, 204, 295, 322, 525
BstMAI GTCTC 4 cut(s) 36, 154, 269, 901
BstMBI GATC 6 cut(s) 4, 36, 201, 292, 319, 522
BstNI CCWGG 2 cut(s) 615, 625
BstSCI CCNGG 3 cut(s) 174, 613, 623
BstV1I GCAGC 5 cut(s) 217, 245, 829, 1084, 1093
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 5 cut(s) 81, 221, 278, 429, 752
BtgI CCRYGG 1 cut(s) 973
BtsCI GGATG 6 cut(s) 59, 171, 404, 740, 780, 802
BtsI GCAGTG 1 cut(s) 594
BtsIMutI CAGTG 4 cut(s) 430, 594, 1028, 1068
Cac8I GCNNGC 5 cut(s) 124, 192, 219, 439, 1128
CaiI CAGNNNCTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 996
CfoI GCGC 1 cut(s) 671
Cfr10I RCCGGY 2 cut(s) 122, 217
Cfr13I GGNCC 1 cut(s) 491
CseI GACGC 1 cut(s) 152
Csp6I GTAC 6 cut(s) 211, 237, 331, 472, 511, 682
CviAII CATG 2 cut(s) 274, 997
CviQI GTAC 6 cut(s) 211, 237, 331, 472, 511, 682
DdeI CTNAG 7 cut(s) 12, 153, 254, 549, 609, 1020, 1120
DpnI GATC 6 cut(s) 6, 38, 203, 294, 321, 524
DpnII GATC 6 cut(s) 4, 36, 201, 292, 319, 522
DrdI GACNNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 893
EaeI YGGCCR 2 cut(s) 276, 427
Eam1104I CTCTTC 1 cut(s) 349
EarI CTCTTC 1 cut(s) 349
EciI GGCGGA 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 1019
Eco130I CCWWGG 4 cut(s) 159, 415, 430, 792
Eco24I GRGCYC 2 cut(s) 192, 1021
Eco31I GGTCTC 1 cut(s) 269
Eco47I GGWCC 1 cut(s) 491
Eco53kI GAGCTC 1 cut(s) 1019
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 83
EcoICRI GAGCTC 1 cut(s) 1019
EcoRI GAATTC 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 613, 623
EcoT14I CCWWGG 4 cut(s) 159, 415, 430, 792
EcoT38I GRGCYC 2 cut(s) 192, 1021
ErhI CCWWGG 4 cut(s) 159, 415, 430, 792
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 277, 1000
FalI AAGNNNNNCTT 4 cut(s) 328, 360, 657, 689
FatI CATG 2 cut(s) 273, 996
FauI CCCGC 1 cut(s) 199
FblI GTMKAC 1 cut(s) 141
Fnu4HI GCNGC 6 cut(s) 120, 231, 259, 818, 1098, 1107
FokI GGATG 6 cut(s) 46, 158, 411, 727, 767, 809
FriOI GRGCYC 2 cut(s) 192, 1021
Fsp4HI GCNGC 6 cut(s) 120, 231, 259, 818, 1098, 1107
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 670
GluI GCNGC 6 cut(s) 120, 231, 259, 818, 1098, 1107
GsaI CCCAGC 1 cut(s) 824
GsuI CTGGAG 1 cut(s) 1035
HaeII RGCGCY 1 cut(s) 672
HaeIII GGCC 5 cut(s) 81, 221, 278, 429, 752
HapII CCGG 4 cut(s) 123, 176, 218, 852
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 671
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 277, 1000
Hin6I GCGC 1 cut(s) 669
HinP1I GCGC 1 cut(s) 669
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
HinfI GANTC 2 cut(s) 249, 387
HpaII CCGG 4 cut(s) 123, 176, 218, 852
HphI GGTGA 3 cut(s) 565, 869, 944
Hpy166II GTNNAC 3 cut(s) 142, 501, 969
Hpy188I TCNGA 8 cut(s) 13, 36, 187, 481, 637, 664, 1123, 1139
Hpy188III TCNNGA 5 cut(s) 85, 205, 290, 466, 997
Hpy8I GTNNAC 3 cut(s) 142, 501, 969
Hpy99I CGWCG 2 cut(s) 119, 146
HpyAV CCTTC 4 cut(s) 232, 586, 659, 1051
HpyCH4III ACNGT 2 cut(s) 425, 928
HpyF3I CTNAG 7 cut(s) 12, 153, 254, 549, 609, 1020, 1120
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 277, 1000
HspAI GCGC 1 cut(s) 669
KroI GCCGGC 2 cut(s) 122, 217
KroNI GCCGGC 2 cut(s) 124, 219
Kzo9I GATC 6 cut(s) 4, 36, 201, 292, 319, 522
LmnI GCTCC 4 cut(s) 184, 370, 809, 1016
Lsp1109I GCAGC 5 cut(s) 217, 245, 829, 1084, 1093
LweI GCATC 6 cut(s) 81, 348, 551, 749, 925, 1027
MaeI CTAG 1 cut(s) 42
MaeIII GTNAC 3 cut(s) 280, 419, 1078
MalI GATC 6 cut(s) 6, 38, 203, 294, 321, 524
MboI GATC 6 cut(s) 4, 36, 201, 292, 319, 522
MboII GAAGA 6 cut(s) 100, 211, 336, 382, 955, 958
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 192, 806, 1021
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 2 cut(s) 357, 714
MluNI TGGCCA 1 cut(s) 429
MmeI TCCRAC 1 cut(s) 1036
Mox20I TGGCCA 1 cut(s) 429
MroNI GCCGGC 2 cut(s) 122, 217
MscI TGGCCA 1 cut(s) 429
MslI CAYNNNNRTG 2 cut(s) 272, 728
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 2 cut(s) 258, 820
MspI CCGG 4 cut(s) 123, 176, 218, 852
MspR9I CCNGG 3 cut(s) 176, 615, 625
MvaI CCWGG 2 cut(s) 615, 625
NaeI GCCGGC 2 cut(s) 124, 219
NciI CCSGG 1 cut(s) 176
NdeII GATC 6 cut(s) 4, 36, 201, 292, 319, 522
NgoMIV GCCGGC 2 cut(s) 122, 217
NlaIII CATG 2 cut(s) 277, 1000
NlaIV GGNNCC 3 cut(s) 180, 405, 436
NmuCI GTSAC 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 996
PdiI GCCGGC 2 cut(s) 124, 219
PfeI GAWTC 2 cut(s) 249, 387
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 6 cut(s) 121, 232, 260, 819, 1099, 1108
Psp124BI GAGCTC 1 cut(s) 1021
Psp6I CCWGG 2 cut(s) 613, 623
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 2 cut(s) 613, 623
PspN4I GGNNCC 3 cut(s) 180, 405, 436
PspPI GGNCC 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 4
PsyI GACNNNGTC 1 cut(s) 146
PvuII CAGCTG 2 cut(s) 258, 820
RsaI GTAC 6 cut(s) 212, 238, 332, 473, 512, 683
RsaNI GTAC 6 cut(s) 211, 237, 331, 472, 511, 682
RseI CAYNNNNRTG 2 cut(s) 272, 728
SacI GAGCTC 1 cut(s) 1021
SalI GTCGAC 1 cut(s) 140
SatI GCNGC 6 cut(s) 120, 231, 259, 818, 1098, 1107
Sau3AI GATC 6 cut(s) 4, 36, 201, 292, 319, 522
Sau96I GGNCC 1 cut(s) 491
ScaI AGTACT 1 cut(s) 473
ScrFI CCNGG 3 cut(s) 176, 615, 625
SduI GDGCHC 3 cut(s) 192, 806, 1021
SfaNI GCATC 6 cut(s) 81, 348, 551, 749, 925, 1027
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 491
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 272, 728
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 357, 714
SsiI CCGC 5 cut(s) 66, 111, 120, 192, 261
SspMI CTAG 1 cut(s) 42
SstI GAGCTC 1 cut(s) 1021
StyD4I CCNGG 3 cut(s) 174, 613, 623
StyI CCWWGG 4 cut(s) 159, 415, 430, 792
TaaI ACNGT 2 cut(s) 425, 928
TaqI TCGA 3 cut(s) 84, 141, 204
TasI AATT 2 cut(s) 357, 714
TatI WGTACW 6 cut(s) 210, 236, 330, 471, 510, 681
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 2 cut(s) 249, 387
TscAI CASTG 4 cut(s) 430, 594, 1028, 1075
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 5 cut(s) 230, 258, 817, 1097, 1106
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 746
TspGWI ACGGA 2 cut(s) 171, 977
TspRI CASTG 4 cut(s) 430, 594, 1028, 1075
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 2 cut(s) 357, 714
XhoI CTCGAG 1 cut(s) 83
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 42
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.