Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009140.1

Orthogroup ID

OG0013856

Physical Location & Seq

Genomic Coordinates Reverse (-)

7949 .. 10151

Gene Structure 2203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009140.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

atggatctcactgagaaatcctcccgtcagtctctgatccctagcttcctctacggctcctcctccgccaaaacctttgggctcgagcagatgcttcacgccagccccagccccagacccagacccagagccgccttcaacacgaatgtggaggcagtctcgcaggccacgggtttggtcattccttctccgacggagccttcgaagaagatcgagatgtactcgcctgccttctatgctgcttgcactgcaggaggaatcctcagctgcggtctcacccacatggccgtcactcctcttgacctcgtcaagtgcaatatgcagattgatcctacaaagtacaaaagcatttcttctggttttggagttctgttaaaggagcagggtgttagaggattcttcaagggatgggtgcctaccctccttggttacagtggtcaaggtgcctgcaagttcgggttctatgagtttttcaagaagtactactctgaccttgccggaccagagtttactgccaagtacaagactttgatctaccttgctggttctgcatctgctgaggtgattgcagatattgccctatgcccctttgaggcagtgaaggtcagggtacaaactcagcctggctttgccaggggtttgtcagatggacttcccaagtttatcaaatctgaaggcgcacttgggttgtacaagggtattgttcctctatggggtcgccaaattccatacacaatgatgaagtttgcatcctttgaggccattgtggagaatatctataaatatgccatccctacacctaaagatgagtgctccaaaagtttgcagctgggtgtgagttttgctggtggatatgtggctggtgttttctgtgctattgtgtctcaccctgctgacaatcttgtctcttttctcaacaatgccaaaggggcaactgttggtgatgctgtgaagaagattggagtgttgggtctgtttacccgtgggcttcccctccgtattgtcatgattggaactcttaccggagctcagtggggtatctacgatgcattcaaagtttttgttggactgccgaccaccggtggtgtcactcctcctccggctgctgcagctgctgcctcagagcttgcaaaggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

379

Amino Acids

40.36

Weight (kDa)

9.25

Isoelectric Point (pI)

37.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14040
fragaria_vesca	FvH4_6g54190
malus_domestica	MD09G1004400.v1.1 MD17G1007900.v1.1
prunus_persica	Prupe.3G312300_v2.0.a1
pyrus_communis	pycom111g00320 pycom17g00340
rosa_chinensis	RchiOBHm_Chr2g0176371
rosa_laevigata	RLG00000022407
rosa_multiflora	Rmu_co8088082.1_g000001 Rmu_sc0009140.1_g000002 Rmu_sc0027060.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076530
rosa_rugosa	Rorug02G0593700
rosa_samantha	Rh2AG672100 Rh2CG646300
rosa_wichuraiana	Rw2G055120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	902
AccB1I	GGYRCC	2 cut(s)	412, 443
AciI	CCGC	3 cut(s)	66, 132, 270
AclWI	GGATC	3 cut(s)	12, 31, 323
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	723
AcuI	CTGAAG	1 cut(s)	693
AfaI	GTAC	6 cut(s)	221, 341, 482, 521, 612, 692
AfiI	CCNNNNNNNGG	3 cut(s)	592, 713, 1079
AgeI	ACCGGT	1 cut(s)	1079
AgsI	TTSAA	4 cut(s)	139, 403, 475, 1054
AjnI	CCWGG	2 cut(s)	622, 632
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	6 cut(s)	45, 267, 829, 1028, 1112, 1126
AluI	AGCT	6 cut(s)	45, 267, 829, 1028, 1112, 1126
Alw21I	GWGCWC	2 cut(s)	815, 1030
Alw26I	GTCTC	5 cut(s)	36, 163, 278, 888, 910
AlwI	GGATC	3 cut(s)	12, 31, 323
AlwNI	CAGNNNCTG	2 cut(s)	34, 1115
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	3 cut(s)	165, 285, 759
ApeKI	GCWGC	8 cut(s)	239, 267, 826, 1103, 1106, 1109, 1112, 1115
ApoI	RAATTY	1 cut(s)	723
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
AsiGI	ACCGGT	1 cut(s)	1079
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	4 cut(s)	268, 574, 878, 953
AsuII	TTCGAA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	412, 443
BanII	GRGCYC	2 cut(s)	84, 1030
Bbv12I	GWGCWC	2 cut(s)	815, 1030
BbvCI	CCTCAGC	2 cut(s)	263, 558
BbvI	GCAGC	8 cut(s)	226, 254, 838, 1090, 1093, 1099, 1102, 1121
BccI	CCATC	3 cut(s)	402, 641, 797
BceAI	ACGGC	2 cut(s)	70, 272
BciT130I	CCWGG	2 cut(s)	624, 634
BcoDI	GTCTC	5 cut(s)	36, 163, 278, 888, 910
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	249, 1107
BglI	GCCNNNNNGGC	1 cut(s)	929
BisI	GCNGC	9 cut(s)	132, 240, 268, 827, 1104, 1107, 1110, 1113, 1116
BlsI	GCNGC	9 cut(s)	133, 241, 269, 828, 1105, 1108, 1111, 1114, 1117
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	2 cut(s)	624, 634
Bme18I	GGWCC	1 cut(s)	500
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	500
BmiI	GGNNCC	4 cut(s)	58, 198, 414, 445
BmrFI	CCNGG	2 cut(s)	624, 634
BmsI	GCATC	5 cut(s)	81, 560, 758, 934, 1036
BplI	GAGNNNNNCTC	7 cut(s)	37, 143, 175, 206, 238, 246, 278
Bpu10I	CCTNAGC	2 cut(s)	263, 558
Bpu14I	TTCGAA	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	278
BsaJI	CCNNGG	4 cut(s)	168, 424, 633, 982
BsaWI	WCCGGW	2 cut(s)	1022, 1079
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 1081, 1111
Bsc4I	CCNNNNNNNGG	3 cut(s)	592, 713, 1079
Bse118I	RCCGGY	1 cut(s)	1079
BseBI	CCWGG	2 cut(s)	624, 634
BseDI	CCNNGG	4 cut(s)	168, 424, 633, 982
BseGI	GGATG	3 cut(s)	413, 749, 789
BseLI	CCNNNNNNNGG	3 cut(s)	592, 713, 1079
BseMII	CTCAG	5 cut(s)	277, 549, 632, 1043, 1134
BseRI	GAGGAG	5 cut(s)	49, 52, 285, 1083, 1086
BseXI	GCAGC	8 cut(s)	226, 254, 838, 1090, 1093, 1099, 1102, 1121
BseYI	CCCAGC	2 cut(s)	107, 829
BshFI	GGCC	3 cut(s)	167, 287, 761
BshNI	GGYRCC	2 cut(s)	412, 443
BshTI	ACCGGT	1 cut(s)	1079
BsiHKAI	GWGCWC	2 cut(s)	815, 1030
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	4 cut(s)	498, 1023, 1080, 1100
BslI	CCNNNNNNNGG	3 cut(s)	592, 713, 1079
BsmAI	GTCTC	5 cut(s)	36, 163, 278, 888, 910
BsmI	GAATGC	1 cut(s)	1049
BsnI	GGCC	3 cut(s)	167, 287, 761
Bso31I	GGTCTC	1 cut(s)	278
BsoBI	CYCGRG	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	203
Bsp1286I	GDGCHC	3 cut(s)	84, 815, 1030
Bsp1407I	TGTACA	1 cut(s)	690
Bsp143I	GATC	5 cut(s)	4, 36, 210, 328, 531
BspACI	CCGC	3 cut(s)	66, 132, 270
BspANI	GGCC	3 cut(s)	167, 287, 761
BspCNI	CTCAG	6 cut(s)	4, 276, 550, 631, 1042, 1133
BspHI	TCATGA	1 cut(s)	1005
BspLI	GGNNCC	4 cut(s)	58, 198, 414, 445
BspMAI	CTGCAG	2 cut(s)	253, 1111
BspPI	GGATC	3 cut(s)	12, 31, 323
BspT104I	TTCGAA	1 cut(s)	203
BspT107I	GGYRCC	2 cut(s)	412, 443
BspTNI	GGTCTC	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	1079
BsrGI	TGTACA	1 cut(s)	690
BssAI	RCCGGY	1 cut(s)	1079
BssECI	CCNNGG	4 cut(s)	168, 424, 633, 982
BssMI	GATC	5 cut(s)	4, 36, 210, 328, 531
BssT1I	CCWWGG	1 cut(s)	424
Bst2UI	CCWGG	2 cut(s)	624, 634
Bst4CI	ACNGT	2 cut(s)	434, 937
BstAPI	GCANNNNNTGC	2 cut(s)	575, 1115
BstAUI	TGTACA	1 cut(s)	690
BstBI	TTCGAA	1 cut(s)	203
BstC8I	GCNNGC	6 cut(s)	103, 165, 228, 244, 448, 1128
BstDEI	CTNAG	6 cut(s)	12, 263, 558, 618, 1029, 1120
BstDSI	CCRYGG	2 cut(s)	168, 982
BstF5I	GGATG	3 cut(s)	413, 749, 789
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	5 cut(s)	7, 39, 213, 331, 534
BstMAI	GTCTC	5 cut(s)	36, 163, 278, 888, 910
BstMBI	GATC	5 cut(s)	4, 36, 210, 328, 531
BstMWI	GCNNNNNNNGC	8 cut(s)	236, 248, 548, 575, 929, 1109, 1112, 1115
BstNI	CCWGG	2 cut(s)	624, 634
BstSCI	CCNGG	2 cut(s)	622, 632
BstSFI	CTRYAG	2 cut(s)	249, 1107
BstV1I	GCAGC	8 cut(s)	226, 254, 838, 1090, 1093, 1099, 1102, 1121
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	3 cut(s)	167, 287, 761
BtgI	CCRYGG	2 cut(s)	168, 982
BtsCI	GGATG	3 cut(s)	413, 749, 789
BtsI	GCAGTG	2 cut(s)	246, 603
BtsIMutI	CAGTG	5 cut(s)	9, 246, 439, 603, 1037
Cac8I	GCNNGC	6 cut(s)	103, 165, 228, 244, 448, 1128
CaiI	CAGNNNCTG	2 cut(s)	34, 1115
CciI	TCATGA	1 cut(s)	1005
CfoI	GCGC	1 cut(s)	680
Cfr10I	RCCGGY	1 cut(s)	1079
Cfr13I	GGNCC	1 cut(s)	500
Csp6I	GTAC	6 cut(s)	220, 340, 481, 520, 611, 691
CspAI	ACCGGT	1 cut(s)	1079
CviAII	CATG	2 cut(s)	283, 1006
CviQI	GTAC	6 cut(s)	220, 340, 481, 520, 611, 691
DdeI	CTNAG	6 cut(s)	12, 263, 558, 618, 1029, 1120
DpnI	GATC	5 cut(s)	6, 38, 212, 330, 533
DpnII	GATC	5 cut(s)	4, 36, 210, 328, 531
DrdI	GACNNNNNNGTC	1 cut(s)	902
DseDI	GACNNNNNNGTC	1 cut(s)	902
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	424
Eco24I	GRGCYC	2 cut(s)	84, 1030
Eco31I	GGTCTC	1 cut(s)	278
Eco47I	GGWCC	1 cut(s)	500
Eco53kI	GAGCTC	1 cut(s)	1028
Eco57I	CTGAAG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	1028
EcoRII	CCWGG	2 cut(s)	622, 632
EcoT14I	CCWWGG	1 cut(s)	424
EcoT22I	ATGCAT	1 cut(s)	1051
EcoT38I	GRGCYC	2 cut(s)	84, 1030
ErhI	CCWWGG	1 cut(s)	424
FaeI	CATG	2 cut(s)	286, 1009
FalI	AAGNNNNNCTT	4 cut(s)	337, 369, 666, 698
FatI	CATG	2 cut(s)	282, 1005
Fnu4HI	GCNGC	9 cut(s)	132, 240, 268, 827, 1104, 1107, 1110, 1113, 1116
FokI	GGATG	3 cut(s)	420, 736, 776
FriOI	GRGCYC	2 cut(s)	84, 1030
Fsp4HI	GCNGC	9 cut(s)	132, 240, 268, 827, 1104, 1107, 1110, 1113, 1116
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	9 cut(s)	132, 240, 268, 827, 1104, 1107, 1110, 1113, 1116
GsaI	CCCAGC	2 cut(s)	111, 833
HaeIII	GGCC	3 cut(s)	167, 287, 761
HapII	CCGG	4 cut(s)	498, 1023, 1080, 1100
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	2 cut(s)	286, 1009
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HinfI	GANTC	2 cut(s)	258, 396
HpaII	CCGG	4 cut(s)	498, 1023, 1080, 1100
HphI	GGTGA	4 cut(s)	268, 574, 878, 953
Hpy166II	GTNNAC	2 cut(s)	510, 978
Hpy188I	TCNGA	7 cut(s)	36, 192, 490, 646, 673, 1123, 1139
Hpy188III	TCNNGA	4 cut(s)	214, 299, 475, 1006
Hpy8I	GTNNAC	2 cut(s)	510, 978
Hpy99I	CGWCG	1 cut(s)	196
HpyAV	CCTTC	6 cut(s)	145, 195, 210, 241, 595, 668
HpyCH4III	ACNGT	2 cut(s)	434, 937
HpyF10VI	GCNNNNNNNGC	8 cut(s)	236, 248, 548, 575, 929, 1109, 1112, 1115
HpyF3I	CTNAG	6 cut(s)	12, 263, 558, 618, 1029, 1120
Hsp92II	CATG	2 cut(s)	286, 1009
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	5 cut(s)	4, 36, 210, 328, 531
LmnI	GCTCC	5 cut(s)	62, 196, 379, 818, 1025
Lsp1109I	GCAGC	8 cut(s)	226, 254, 838, 1090, 1093, 1099, 1102, 1121
LweI	GCATC	5 cut(s)	81, 560, 758, 934, 1036
MaeI	CTAG	1 cut(s)	42
MaeIII	GTNAC	3 cut(s)	289, 428, 1087
MalI	GATC	5 cut(s)	6, 38, 212, 330, 533
MboI	GATC	5 cut(s)	4, 36, 210, 328, 531
MboII	GAAGA	6 cut(s)	217, 220, 345, 391, 964, 967
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	84, 815, 1030
MluCI	AATT	1 cut(s)	723
MmeI	TCCRAC	2 cut(s)	215, 1045
Mph1103I	ATGCAT	1 cut(s)	1051
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	3 cut(s)	146, 281, 737
MspA1I	CMGCKG	3 cut(s)	267, 829, 1112
MspI	CCGG	4 cut(s)	498, 1023, 1080, 1100
MspR9I	CCNGG	2 cut(s)	624, 634
Mva1269I	GAATGC	1 cut(s)	1049
MvaI	CCWGG	2 cut(s)	624, 634
MwoI	GCNNNNNNNGC	8 cut(s)	236, 248, 548, 575, 929, 1109, 1112, 1115
NdeII	GATC	5 cut(s)	4, 36, 210, 328, 531
NlaIII	CATG	2 cut(s)	286, 1009
NlaIV	GGNNCC	4 cut(s)	58, 198, 414, 445
NmuCI	GTSAC	2 cut(s)	289, 1087
NsiI	ATGCAT	1 cut(s)	1051
NspV	TTCGAA	1 cut(s)	203
OliI	CACNNNNGTG	1 cut(s)	146
PaeR7I	CTCGAG	1 cut(s)	83
PagI	TCATGA	1 cut(s)	1005
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	1 cut(s)	1049
PfeI	GAWTC	2 cut(s)	258, 396
PflFI	GACNNNGTC	1 cut(s)	305
PinAI	ACCGGT	1 cut(s)	1079
PkrI	GCNGC	9 cut(s)	133, 241, 269, 828, 1105, 1108, 1111, 1114, 1117
Psp124BI	GAGCTC	1 cut(s)	1030
Psp6I	CCWGG	2 cut(s)	622, 632
PspFI	CCCAGC	2 cut(s)	107, 829
PspGI	CCWGG	2 cut(s)	622, 632
PspN4I	GGNNCC	4 cut(s)	58, 198, 414, 445
PspPI	GGNCC	1 cut(s)	500
PspXI	VCTCGAGB	1 cut(s)	83
PstI	CTGCAG	2 cut(s)	253, 1111
PstNI	CAGNNNCTG	2 cut(s)	34, 1115
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	305
PvuII	CAGCTG	3 cut(s)	267, 829, 1112
RsaI	GTAC	6 cut(s)	221, 341, 482, 521, 612, 692
RsaNI	GTAC	6 cut(s)	220, 340, 481, 520, 611, 691
RseI	CAYNNNNRTG	3 cut(s)	146, 281, 737
SacI	GAGCTC	1 cut(s)	1030
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	9 cut(s)	132, 240, 268, 827, 1104, 1107, 1110, 1113, 1116
Sau3AI	GATC	5 cut(s)	4, 36, 210, 328, 531
Sau96I	GGNCC	1 cut(s)	500
ScaI	AGTACT	1 cut(s)	482
ScrFI	CCNGG	2 cut(s)	624, 634
SduI	GDGCHC	3 cut(s)	84, 815, 1030
SfaNI	GCATC	5 cut(s)	81, 560, 758, 934, 1036
SfcI	CTRYAG	2 cut(s)	249, 1107
Sfr274I	CTCGAG	1 cut(s)	83
SfuI	TTCGAA	1 cut(s)	203
SgrAI	CRCCGGYG	1 cut(s)	1079
SinI	GGWCC	1 cut(s)	500
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	146, 281, 737
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	723
SsiI	CCGC	3 cut(s)	66, 132, 270
SspMI	CTAG	1 cut(s)	42
SstI	GAGCTC	1 cut(s)	1030
StyD4I	CCNGG	2 cut(s)	622, 632
StyI	CCWWGG	1 cut(s)	424
TaaI	ACNGT	2 cut(s)	434, 937
TaqI	TCGA	3 cut(s)	84, 203, 213
TasI	AATT	1 cut(s)	723
TatI	WGTACW	5 cut(s)	219, 339, 480, 519, 690
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	2 cut(s)	258, 396
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TscAI	CASTG	5 cut(s)	16, 253, 439, 603, 1037
TseFI	GTSAC	2 cut(s)	289, 1087
TseI	GCWGC	8 cut(s)	239, 267, 826, 1103, 1106, 1109, 1112, 1115
Tsp45I	GTSAC	2 cut(s)	289, 1087
TspDTI	ATGAA	1 cut(s)	755
TspGWI	ACGGA	2 cut(s)	209, 986
TspRI	CASTG	5 cut(s)	16, 253, 439, 603, 1037
Tth111I	GACNNNGTC	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	500
XapI	RAATTY	1 cut(s)	723
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	1 cut(s)	42
ZrmI	AGTACT	1 cut(s)	482
Zsp2I	ATGCAT	1 cut(s)	1051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.