Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013856

Physical Location & Seq

Genomic Coordinates Forward (+)

71556199 .. 71557269

Gene Structure 1071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0593700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCACCTTTAAGATTCTTCAATCTTTTCGCCATTTCTCTTGTCTCGTCCTTCCTGCTTACTCTCCTGCCCAATGCAACCTCAAATGTAAGCTTTCCTAGACAAAGCTGGTTGAACCACGGTGGAGATTTGGATAACAGAAGATATGCCAGCAGTGAGACCAGGATCAGCCCTAAAACGGTTTCCAAACTACGCTTGAAGTGGGAGTTCCATGCGGGCAAAGACATATCTGCAACCCCGGCAATCTACGACGATACCATCTATTTCCCAAGCTGGAATGGATACCTCTACGCCGTCAAAGCTTCTGATGTCTCGAGATCAACCCCAACAATCGCAGGCGATAATCTGTTGATTGTCGGAATCTATGGACCAGCAATTGTCATCGCCGTTGAATTGTCAACAGGAAGGCTTGTGTGGTCAACCTTGCTTGATAGCCACCCGGCAAGTCTTATAACGTACAATGTCCGGAACTTACTACGAAGGGAGTATCTATATTGGAACTTCGTCACTAGAAGAGAGCACCAACGTTGGGGAATGTTGTACCTTTCGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

184

Amino Acids

21.02

Weight (kDa)

9.81

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14040
fragaria_vesca	FvH4_6g54190
malus_domestica	MD09G1004400.v1.1 MD17G1007900.v1.1
prunus_persica	Prupe.3G312300_v2.0.a1
pyrus_communis	pycom111g00320 pycom17g00340
rosa_chinensis	RchiOBHm_Chr2g0176371
rosa_laevigata	RLG00000022407
rosa_multiflora	Rmu_co8088082.1_g000001 Rmu_sc0009140.1_g000002 Rmu_sc0027060.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076530
rosa_rugosa	Rorug02G0593700
rosa_samantha	Rh2AG672100 Rh2CG646300
rosa_wichuraiana	Rw2G055120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	550
AccIII	TCCGGA	1 cut(s)	465
AciI	CCGC	2 cut(s)	215, 550
AclI	AACGTT	1 cut(s)	526
AclWI	GGATC	1 cut(s)	173
AfaI	GTAC	2 cut(s)	458, 542
AfiI	CCNNNNNNNGG	2 cut(s)	178, 529
AgsI	TTSAA	4 cut(s)	22, 115, 199, 392
AjnI	CCWGG	1 cut(s)	161
AluBI	AGCT	4 cut(s)	93, 108, 273, 302
AluI	AGCT	4 cut(s)	93, 108, 273, 302
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	49, 152, 316
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	313
Aor13HI	TCCGGA	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	368
AsuC2I	CCSGG	2 cut(s)	239, 440
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	368
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	522
BccI	CCATC	1 cut(s)	266
BceAI	ACGGC	2 cut(s)	278, 371
BciT130I	CCWGG	1 cut(s)	163
BciVI	GTATCC	1 cut(s)	275
BcnI	CCSGG	2 cut(s)	239, 440
BcoDI	GTCTC	3 cut(s)	49, 152, 316
BfaI	CTAG	2 cut(s)	99, 510
BfuI	GTATCC	1 cut(s)	275
Bme1390I	CCNGG	3 cut(s)	163, 239, 440
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	1 cut(s)	368
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	163, 239, 440
BpuMI	CCSGG	2 cut(s)	239, 440
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	118, 237
BsaWI	WCCGGW	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 529
BseAI	TCCGGA	1 cut(s)	465
BseBI	CCWGG	1 cut(s)	163
BseDI	CCNNGG	2 cut(s)	118, 237
BseLI	CCNNNNNNNGG	2 cut(s)	178, 529
Bsh1236I	CGCG	1 cut(s)	550
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	313
BsiSI	CCGG	3 cut(s)	239, 440, 466
BslI	CCNNNNNNNGG	2 cut(s)	178, 529
BsmAI	GTCTC	3 cut(s)	49, 152, 316
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp13I	TCCGGA	1 cut(s)	465
Bsp143I	GATC	2 cut(s)	165, 317
BspACI	CCGC	2 cut(s)	215, 550
BspEI	TCCGGA	1 cut(s)	465
BspFNI	CGCG	1 cut(s)	550
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	152
BssECI	CCNNGG	2 cut(s)	118, 237
BssMI	GATC	2 cut(s)	165, 317
Bst2UI	CCWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	122, 181
Bst6I	CTCTTC	1 cut(s)	508
BstC8I	GCNNGC	3 cut(s)	151, 217, 337
BstDSI	CCRYGG	1 cut(s)	118
BstFNI	CGCG	1 cut(s)	550
BstKTI	GATC	2 cut(s)	168, 320
BstMAI	GTCTC	3 cut(s)	49, 152, 316
BstMBI	GATC	2 cut(s)	165, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 299
BstNI	CCWGG	1 cut(s)	163
BstSCI	CCNGG	3 cut(s)	161, 237, 438
BstUI	CGCG	1 cut(s)	550
BsuI	GTATCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	118
BtgZI	GCGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	160
Cac8I	GCNNGC	3 cut(s)	151, 217, 337
Cfr13I	GGNCC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	457, 541
CviAII	CATG	1 cut(s)	212
CviJI	RGCY	7 cut(s)	93, 108, 171, 273, 302, 409, 435
CviKI_1	RGCY	7 cut(s)	93, 108, 171, 273, 302, 409, 435
CviQI	GTAC	2 cut(s)	457, 541
DpnI	GATC	2 cut(s)	167, 319
DpnII	GATC	2 cut(s)	165, 317
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	368
Eco88I	CYCGRG	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	161
FaeI	CATG	1 cut(s)	215
FaiI	YATR	6 cut(s)	147, 213, 227, 366, 452, 493
FatI	CATG	1 cut(s)	211
FauI	CCCGC	1 cut(s)	208
FspBI	CTAG	2 cut(s)	99, 510
HapII	CCGG	3 cut(s)	239, 440, 466
Hin1II	CATG	1 cut(s)	215
HincII	GTYRAC	2 cut(s)	399, 420
HindII	GTYRAC	2 cut(s)	399, 420
HindIII	AAGCTT	2 cut(s)	91, 300
HinfI	GANTC	2 cut(s)	15, 360
HpaII	CCGG	3 cut(s)	239, 440, 466
Hpy166II	GTNNAC	2 cut(s)	399, 420
Hpy188I	TCNGA	2 cut(s)	307, 359
Hpy188III	TCNNGA	3 cut(s)	313, 315, 466
Hpy8I	GTNNAC	2 cut(s)	399, 420
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	3 cut(s)	61, 399, 474
HpyCH4III	ACNGT	2 cut(s)	122, 181
HpyCH4IV	ACGT	2 cut(s)	455, 526
HpyCH4V	TGCA	2 cut(s)	77, 233
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 299
HpySE526I	ACGT	2 cut(s)	455, 526
Hsp92II	CATG	1 cut(s)	215
Kpn2I	TCCGGA	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	165, 317
MaeI	CTAG	2 cut(s)	99, 510
MaeII	ACGT	2 cut(s)	455, 526
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	2 cut(s)	167, 319
MboI	GATC	2 cut(s)	165, 317
MboII	GAAGA	3 cut(s)	10, 153, 525
MfeI	CAATTG	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	2 cut(s)	375, 392
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	2 cut(s)	91, 296
MroI	TCCGGA	1 cut(s)	465
MseI	TTAA	1 cut(s)	11
MspI	CCGG	3 cut(s)	239, 440, 466
MspR9I	CCNGG	3 cut(s)	163, 239, 440
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	1 cut(s)	163
MvnI	CGCG	1 cut(s)	550
MwoI	GCNNNNNNNGC	2 cut(s)	239, 299
NciI	CCSGG	2 cut(s)	239, 440
NdeII	GATC	2 cut(s)	165, 317
NlaIII	CATG	1 cut(s)	215
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	15, 360
PsiI	TTATAA	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	161
PspGI	CCWGG	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	458, 542
RsaNI	GTAC	2 cut(s)	457, 541
SaqAI	TTAA	1 cut(s)	11
Sau3AI	GATC	2 cut(s)	165, 317
Sau96I	GGNCC	1 cut(s)	368
ScrFI	CCNGG	3 cut(s)	163, 239, 440
SduI	GDGCHC	1 cut(s)	522
Sfr274I	CTCGAG	1 cut(s)	313
SinI	GGWCC	1 cut(s)	368
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	375, 392
SsiI	CCGC	2 cut(s)	215, 550
SspMI	CTAG	2 cut(s)	99, 510
StyD4I	CCNGG	3 cut(s)	161, 237, 438
TaaI	ACNGT	2 cut(s)	122, 181
TaiI	ACGT	2 cut(s)	458, 529
TaqI	TCGA	1 cut(s)	314
TasI	AATT	2 cut(s)	375, 392
TfiI	GAWTC	2 cut(s)	15, 360
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspRI	CASTG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	368
XhoI	CTCGAG	1 cut(s)	313
XspI	CTAG	2 cut(s)	99, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.