Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013856

Physical Location & Seq

Genomic Coordinates Forward (+)

326335 .. 329308

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00076530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGATCTCACTGAGAAATCCTCCCGTCAGTCTCTGATCCCTAGCTTCCTCTACGGCTCCTCCTCCGCCAAAACTTTTGGGCTCGAGAAGATGCTTCACGCCAGCCCTAGCGCCGCCTTCAACACGAATGTGGAGGCTGTCTCGCAGACCAAGGGGTTGGTCATTCCGTCTCCGACAGAGCCGTCGAAGAAGATCGAGATGTACTCGCCTGCCTTCTATGCTGCTTGCACTGCAGGAGGAATCCTCAGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCTACAAAGTACAAAAGCATTACTTCTGGTTTTGGAGTTCTGTTCAAGGAGCAGGGTGTTAGAGGATTCTTCAAGGGATGGGTGCCTACCCTCCTTGGTTACAGTGGTCAAGGTGCCTGCAAGTTCGGGTTCTATGAGTTTTTCAAGAAGTACTACTCTGACCTTGCTGGACCAGAGTTTACCGCCAAGTACAAGACTTTGATCTACCTTGCTGGTTCTGCATCTGCTGAGGTGATTGCAGATGTTGCACTATGCCCCTTCGAGGCAGTGAAGGTCAGGGTACAAACTCAGCCTGGGTTTGCCAGGGGTTTGTCAGATGGACTTCCCAAGTTTGTCAAATCTGAAGGCGCACTTGGGTTGTACAAGGGTATTGTTCCTCTATGGGGTCGCCAAATTCCATACACAATGATGAAGTTTGCCTCCTTTGAGGCCATTGTGGAGAATATCTATAAATATGCCATCCCTACACCTAAAGATGAGTGCTCCAAAAGTTTGCAGCTGGGTGTGAGTTTTGCTGGTGGATATGTGGCTGGTGTTTTCTGTGCTATTGTGTCTCACCCTGCTGACAATCTTGTCTCTTTTCTCAACAATGCCAAAGGGGCAACTGTTGGTGATGCTGTGAAGAAGATTGGAGTGTTGGGTCTGTTTACCCGTGGGCTTCCCCTCCGTATTGTCATGATTGGAACTCTTACCGGAGCTCAGTGGGGTATCTACGATGCATTCAAAGTTTTTGTTGGACTGCCGACCACTGGTGGTGTCACTCCTCCTCCGGCTGCTGCAGCTGCTGCTGGTGCTGCCTCAGAGCTTGCAAAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

376

Amino Acids

39.88

Weight (kDa)

9.17

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	73 - 157	1.5e-22	Mitochondrial carrier protein
Mito_carr	PF00153	169 - 255	1.4e-17	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14040
fragaria_vesca	FvH4_6g54190
malus_domestica	MD09G1004400.v1.1 MD17G1007900.v1.1
prunus_persica	Prupe.3G312300_v2.0.a1
pyrus_communis	pycom111g00320 pycom17g00340
rosa_chinensis	RchiOBHm_Chr2g0176371
rosa_laevigata	RLG00000022407
rosa_multiflora	Rmu_co8088082.1_g000001 Rmu_sc0009140.1_g000002 Rmu_sc0027060.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076530
rosa_rugosa	Rorug02G0593700
rosa_samantha	Rh2AG672100 Rh2CG646300
rosa_wichuraiana	Rw2G055120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	181, 884
AccB1I	GGYRCC	2 cut(s)	394, 425
AciI	CCGC	3 cut(s)	66, 114, 495
AclWI	GGATC	3 cut(s)	12, 31, 305
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	705
AcuI	CTGAAG	1 cut(s)	675
AfaI	GTAC	6 cut(s)	203, 323, 464, 503, 594, 674
AfiI	CCNNNNNNNGG	3 cut(s)	574, 695, 1061
AgsI	TTSAA	5 cut(s)	121, 358, 385, 457, 1036
AjnI	CCWGG	2 cut(s)	604, 614
AjuI	GAANNNNNNNTTGG	2 cut(s)	648, 680
AleI	CACNNNNGTG	1 cut(s)	128
AluBI	AGCT	6 cut(s)	45, 249, 811, 1010, 1094, 1117
AluI	AGCT	6 cut(s)	45, 249, 811, 1010, 1094, 1117
Alw21I	GWGCWC	2 cut(s)	797, 1012
Alw26I	GTCTC	6 cut(s)	36, 145, 174, 260, 870, 892
AlwI	GGATC	3 cut(s)	12, 31, 305
AlwNI	CAGNNNCTG	2 cut(s)	34, 1097
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	267, 741
ApeKI	GCWGC	8 cut(s)	221, 808, 1085, 1088, 1091, 1094, 1097, 1106
ApoI	RAATTY	1 cut(s)	705
AspLEI	GCGC	2 cut(s)	113, 662
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	556, 860, 935
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	482
BanI	GGYRCC	2 cut(s)	394, 425
BanII	GRGCYC	2 cut(s)	84, 1012
Bbv12I	GWGCWC	2 cut(s)	797, 1012
BbvCI	CCTCAGC	2 cut(s)	245, 540
BbvI	GCAGC	8 cut(s)	208, 820, 1072, 1075, 1081, 1084, 1093, 1103
BccI	CCATC	3 cut(s)	384, 623, 779
BceAI	ACGGC	3 cut(s)	70, 166, 254
BciT130I	CCWGG	2 cut(s)	606, 616
BcoDI	GTCTC	6 cut(s)	36, 145, 174, 260, 870, 892
BfaI	CTAG	2 cut(s)	42, 108
BfmI	CTRYAG	2 cut(s)	231, 1089
BfoI	RGCGCY	1 cut(s)	114
BglI	GCCNNNNNGGC	1 cut(s)	911
BisI	GCNGC	9 cut(s)	114, 222, 809, 1086, 1089, 1092, 1095, 1098, 1107
BlsI	GCNGC	9 cut(s)	115, 223, 810, 1087, 1090, 1093, 1096, 1099, 1108
BmcAI	AGTACT	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	606, 616
Bme18I	GGWCC	1 cut(s)	482
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	3 cut(s)	58, 396, 427
BmrFI	CCNGG	2 cut(s)	606, 616
BmsI	GCATC	4 cut(s)	81, 542, 916, 1018
BplI	GAGNNNNNCTC	7 cut(s)	37, 125, 157, 188, 220, 228, 260
Bpu10I	CCTNAGC	2 cut(s)	245, 540
BsaI	GGTCTC	1 cut(s)	260
BsaJI	CCNNGG	5 cut(s)	150, 406, 605, 615, 964
BsaWI	WCCGGW	1 cut(s)	1004
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 1063, 1093
Bsc4I	CCNNNNNNNGG	3 cut(s)	574, 695, 1061
Bse1I	ACTGG	1 cut(s)	1066
BseBI	CCWGG	2 cut(s)	606, 616
BseDI	CCNNGG	5 cut(s)	150, 406, 605, 615, 964
BseGI	GGATG	2 cut(s)	395, 771
BseLI	CCNNNNNNNGG	3 cut(s)	574, 695, 1061
BseMII	CTCAG	5 cut(s)	259, 531, 614, 1025, 1125
BseNI	ACTGG	1 cut(s)	1066
BseRI	GAGGAG	4 cut(s)	49, 52, 1065, 1068
BseXI	GCAGC	8 cut(s)	208, 820, 1072, 1075, 1081, 1084, 1093, 1103
BseYI	CCCAGC	1 cut(s)	811
BshFI	GGCC	2 cut(s)	269, 743
BshNI	GGYRCC	2 cut(s)	394, 425
BsiHKAI	GWGCWC	2 cut(s)	797, 1012
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	1005, 1082
BslI	CCNNNNNNNGG	3 cut(s)	574, 695, 1061
BsmAI	GTCTC	6 cut(s)	36, 145, 174, 260, 870, 892
BsmBI	CGTCTC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	2 cut(s)	269, 743
Bso31I	GGTCTC	1 cut(s)	260
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	3 cut(s)	84, 797, 1012
Bsp1407I	TGTACA	1 cut(s)	672
Bsp143I	GATC	5 cut(s)	4, 36, 192, 310, 513
BspACI	CCGC	3 cut(s)	66, 114, 495
BspANI	GGCC	2 cut(s)	269, 743
BspCNI	CTCAG	6 cut(s)	4, 258, 532, 613, 1024, 1124
BspHI	TCATGA	1 cut(s)	987
BspLI	GGNNCC	3 cut(s)	58, 396, 427
BspMAI	CTGCAG	2 cut(s)	235, 1093
BspPI	GGATC	3 cut(s)	12, 31, 305
BspT107I	GGYRCC	2 cut(s)	394, 425
BspTNI	GGTCTC	1 cut(s)	260
BsrGI	TGTACA	1 cut(s)	672
BsrI	ACTGG	1 cut(s)	1066
BssECI	CCNNGG	5 cut(s)	150, 406, 605, 615, 964
BssMI	GATC	5 cut(s)	4, 36, 192, 310, 513
BssT1I	CCWWGG	2 cut(s)	150, 406
Bst2UI	CCWGG	2 cut(s)	606, 616
Bst4CI	ACNGT	2 cut(s)	416, 919
BstAPI	GCANNNNNTGC	2 cut(s)	557, 1097
BstAUI	TGTACA	1 cut(s)	672
BstC8I	GCNNGC	5 cut(s)	103, 210, 226, 430, 1119
BstDEI	CTNAG	6 cut(s)	12, 245, 540, 600, 1011, 1111
BstDSI	CCRYGG	1 cut(s)	964
BstF5I	GGATG	2 cut(s)	395, 771
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 662
BstKTI	GATC	5 cut(s)	7, 39, 195, 313, 516
BstMAI	GTCTC	6 cut(s)	36, 145, 174, 260, 870, 892
BstMBI	GATC	5 cut(s)	4, 36, 192, 310, 513
BstNI	CCWGG	2 cut(s)	606, 616
BstSCI	CCNGG	2 cut(s)	604, 614
BstSFI	CTRYAG	2 cut(s)	231, 1089
BstV1I	GCAGC	8 cut(s)	208, 820, 1072, 1075, 1081, 1084, 1093, 1103
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	2 cut(s)	269, 743
BtgI	CCRYGG	1 cut(s)	964
BtsCI	GGATG	2 cut(s)	395, 771
BtsI	GCAGTG	2 cut(s)	228, 585
BtsIMutI	CAGTG	6 cut(s)	9, 228, 421, 585, 1019, 1059
Cac8I	GCNNGC	5 cut(s)	103, 210, 226, 430, 1119
CaiI	CAGNNNCTG	2 cut(s)	34, 1097
CciI	TCATGA	1 cut(s)	987
CfoI	GCGC	2 cut(s)	113, 662
Cfr13I	GGNCC	1 cut(s)	482
Csp6I	GTAC	6 cut(s)	202, 322, 463, 502, 593, 673
CviAII	CATG	2 cut(s)	265, 988
CviQI	GTAC	6 cut(s)	202, 322, 463, 502, 593, 673
DdeI	CTNAG	6 cut(s)	12, 245, 540, 600, 1011, 1111
DpnI	GATC	5 cut(s)	6, 38, 194, 312, 515
DpnII	GATC	5 cut(s)	4, 36, 192, 310, 513
DrdI	GACNNNNNNGTC	2 cut(s)	181, 884
DseDI	GACNNNNNNGTC	2 cut(s)	181, 884
EaeI	YGGCCR	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	1010
Eco130I	CCWWGG	2 cut(s)	150, 406
Eco24I	GRGCYC	2 cut(s)	84, 1012
Eco31I	GGTCTC	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	482
Eco53kI	GAGCTC	1 cut(s)	1010
Eco57I	CTGAAG	1 cut(s)	675
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	604, 614
EcoT14I	CCWWGG	2 cut(s)	150, 406
EcoT22I	ATGCAT	1 cut(s)	1033
EcoT38I	GRGCYC	2 cut(s)	84, 1012
ErhI	CCWWGG	2 cut(s)	150, 406
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	268, 991
FalI	AAGNNNNNCTT	4 cut(s)	319, 351, 648, 680
FatI	CATG	2 cut(s)	264, 987
Fnu4HI	GCNGC	9 cut(s)	114, 222, 809, 1086, 1089, 1092, 1095, 1098, 1107
FokI	GGATG	2 cut(s)	402, 758
FriOI	GRGCYC	2 cut(s)	84, 1012
Fsp4HI	GCNGC	9 cut(s)	114, 222, 809, 1086, 1089, 1092, 1095, 1098, 1107
FspBI	CTAG	2 cut(s)	42, 108
GlaI	GCGC	2 cut(s)	112, 661
GluI	GCNGC	9 cut(s)	114, 222, 809, 1086, 1089, 1092, 1095, 1098, 1107
GsaI	CCCAGC	1 cut(s)	815
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	269, 743
HapII	CCGG	2 cut(s)	1005, 1082
HhaI	GCGC	2 cut(s)	113, 662
Hin1II	CATG	2 cut(s)	268, 991
Hin6I	GCGC	2 cut(s)	111, 660
HinP1I	GCGC	2 cut(s)	111, 660
HinfI	GANTC	2 cut(s)	240, 378
HpaII	CCGG	2 cut(s)	1005, 1082
HphI	GGTGA	3 cut(s)	556, 860, 935
Hpy166II	GTNNAC	2 cut(s)	492, 960
Hpy188I	TCNGA	7 cut(s)	36, 174, 472, 628, 655, 1114, 1130
Hpy188III	TCNNGA	4 cut(s)	85, 196, 457, 988
Hpy8I	GTNNAC	2 cut(s)	492, 960
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	5 cut(s)	127, 223, 577, 580, 650
HpyCH4III	ACNGT	2 cut(s)	416, 919
HpyF3I	CTNAG	6 cut(s)	12, 245, 540, 600, 1011, 1111
Hsp92II	CATG	2 cut(s)	268, 991
HspAI	GCGC	2 cut(s)	111, 660
Kzo9I	GATC	5 cut(s)	4, 36, 192, 310, 513
LmnI	GCTCC	4 cut(s)	62, 361, 800, 1007
Lsp1109I	GCAGC	8 cut(s)	208, 820, 1072, 1075, 1081, 1084, 1093, 1103
LweI	GCATC	4 cut(s)	81, 542, 916, 1018
MaeI	CTAG	2 cut(s)	42, 108
MaeIII	GTNAC	3 cut(s)	271, 410, 1069
MalI	GATC	5 cut(s)	6, 38, 194, 312, 515
MboI	GATC	5 cut(s)	4, 36, 192, 310, 513
MboII	GAAGA	6 cut(s)	100, 199, 202, 373, 946, 949
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	84, 797, 1012
MluCI	AATT	1 cut(s)	705
MmeI	TCCRAC	2 cut(s)	197, 1027
Mph1103I	ATGCAT	1 cut(s)	1033
MslI	CAYNNNNRTG	3 cut(s)	128, 263, 719
MspA1I	CMGCKG	3 cut(s)	249, 811, 1094
MspI	CCGG	2 cut(s)	1005, 1082
MspR9I	CCNGG	2 cut(s)	606, 616
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	2 cut(s)	606, 616
NdeII	GATC	5 cut(s)	4, 36, 192, 310, 513
NlaIII	CATG	2 cut(s)	268, 991
NlaIV	GGNNCC	3 cut(s)	58, 396, 427
NmuCI	GTSAC	2 cut(s)	271, 1069
NsiI	ATGCAT	1 cut(s)	1033
OliI	CACNNNNGTG	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	83
PagI	TCATGA	1 cut(s)	987
PctI	GAATGC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	240, 378
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	9 cut(s)	115, 223, 810, 1087, 1090, 1093, 1096, 1099, 1108
Psp124BI	GAGCTC	1 cut(s)	1012
Psp6I	CCWGG	2 cut(s)	604, 614
PspFI	CCCAGC	1 cut(s)	811
PspGI	CCWGG	2 cut(s)	604, 614
PspN4I	GGNNCC	3 cut(s)	58, 396, 427
PspPI	GGNCC	1 cut(s)	482
PstI	CTGCAG	2 cut(s)	235, 1093
PstNI	CAGNNNCTG	2 cut(s)	34, 1097
PsuI	RGATCY	1 cut(s)	4
PsyI	GACNNNGTC	1 cut(s)	287
PvuII	CAGCTG	3 cut(s)	249, 811, 1094
RsaI	GTAC	6 cut(s)	203, 323, 464, 503, 594, 674
RsaNI	GTAC	6 cut(s)	202, 322, 463, 502, 593, 673
RseI	CAYNNNNRTG	3 cut(s)	128, 263, 719
SacI	GAGCTC	1 cut(s)	1012
SatI	GCNGC	9 cut(s)	114, 222, 809, 1086, 1089, 1092, 1095, 1098, 1107
Sau3AI	GATC	5 cut(s)	4, 36, 192, 310, 513
Sau96I	GGNCC	1 cut(s)	482
ScaI	AGTACT	1 cut(s)	464
ScrFI	CCNGG	2 cut(s)	606, 616
SduI	GDGCHC	3 cut(s)	84, 797, 1012
SfaNI	GCATC	4 cut(s)	81, 542, 916, 1018
SfcI	CTRYAG	2 cut(s)	231, 1089
Sfr274I	CTCGAG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	482
SlaI	CTCGAG	1 cut(s)	83
SmiMI	CAYNNNNRTG	3 cut(s)	128, 263, 719
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	1 cut(s)	705
SsiI	CCGC	3 cut(s)	66, 114, 495
SspMI	CTAG	2 cut(s)	42, 108
SstI	GAGCTC	1 cut(s)	1012
StyD4I	CCNGG	2 cut(s)	604, 614
StyI	CCWWGG	2 cut(s)	150, 406
TaaI	ACNGT	2 cut(s)	416, 919
TaqI	TCGA	4 cut(s)	84, 185, 195, 573
TasI	AATT	1 cut(s)	705
TatI	WGTACW	5 cut(s)	201, 321, 462, 501, 672
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	2 cut(s)	240, 378
TscAI	CASTG	6 cut(s)	16, 235, 421, 585, 1019, 1066
TseFI	GTSAC	2 cut(s)	271, 1069
TseI	GCWGC	8 cut(s)	221, 808, 1085, 1088, 1091, 1094, 1097, 1106
Tsp45I	GTSAC	2 cut(s)	271, 1069
TspDTI	ATGAA	1 cut(s)	737
TspGWI	ACGGA	2 cut(s)	156, 968
TspRI	CASTG	6 cut(s)	16, 235, 421, 585, 1019, 1066
Tth111I	GACNNNGTC	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	1 cut(s)	705
XhoI	CTCGAG	1 cut(s)	83
XspI	CTAG	2 cut(s)	42, 108
ZrmI	AGTACT	1 cut(s)	464
Zsp2I	ATGCAT	1 cut(s)	1033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.