MD09G1004400.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
368274 .. 371719
3446 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1004400.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGCTCTCTCAGACAAGCAGTCGCGTCAGGCTCTGGTCCCGAGCTTCCTCTACAGCTCCTCGTCCTCCATCGCGCTGGAGAAGATGCTCTACGCCAGGCCTAGCGGCGGCTTCACGCCGACTGCCACCGTCCAAGGAGTCTCCGCCAGGAAGGGCCTCGTCATTCCGTCGCCCAGGGAGCCCTTGGGGAAGATCGAGATGTACTCGCCTTCCTTCTACGCTGCCTGTACTTTTGGAGGAACTCTCTGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCCGCAAAATACAAAAGCATCACATCTGGTTTTGGAGTTCTGCTAAAGGAGCAGGGGGTTAAGGGCTTTTTCAGGGGATGGGTGCCTACCCTCCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTATGGATTCTATGAATATTTCAAGAAGTACTACTCTGACCTTGCTGGACCAGAGTTTGCTGCCAAGTACAAGACCTTGATCTACCTTGCTGGTTCTGCATCTGCTGAGGTCATTGCTGATGTTGCTCTTTGCCCCTTTGAGGCAGTCAAGGTCCGTGTGCAAACTCAGCCTGGATTTGCTAGAGGTTTTTCAGATGGACTTCCTAAGTTTGTCAGATCAGAAGGTGCTCTTGGATTGTACAAGGGTATTGTTCCACTATGGGGACGTCAAATTCCGTACACCATGATGAAGTTTGCCTCCTTTGAGACTATTGTGGAGATGATGTATAAATATGCCATCCCTAGACCTAAGAGCGAGTGCTCCAATTCTTTGCAGCTTGGTGTAAGTTTTGCTGGTGGATACGTGGCTGGTATATTGTGTGCTATTGTATCTCATCCTGCTGACAATCTTGTCTCCTTCCTCAACAATGCCAAAGGAGCAACAGTTGGTGATGCTGTCAAGAAGATGGGAGTGATCGGTCTCTTTACCCGTGGGCTTCCTCTTCGTATTGTCATGATTGGAACTCTTACTGGAGCTCAGTGGGGCATCTATGATTCATTCAAAGTTTTCGTTGGACTGCCAACAACTGGCGGTGCTCCCCCTCCGGTTGCTGCTGCATCCGAGCTTGTTAAGGTGTAA

Protein Analysis

371

Amino Acids

39.6

Weight (kDa)

9.37

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 73 - 157 3e-21 Mitochondrial carrier protein
Mito_carr PF00153 169 - 256 2.1e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013856)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
AatII GACGTC 1 cut(s) 703
AccB1I GGYRCC 2 cut(s) 394, 425
AccB7I CCANNNNNTGG 1 cut(s) 1061
AccII CGCG 2 cut(s) 25, 74
AciI CCGC 5 cut(s) 105, 108, 144, 315, 1065
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 1 cut(s) 705
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 6 cut(s) 203, 229, 464, 503, 674, 713
AfiI CCNNNNNNNGG 4 cut(s) 107, 574, 695, 1061
AgsI TTSAA 2 cut(s) 457, 1036
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 4 cut(s) 95, 146, 173, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AluBI AGCT 5 cut(s) 45, 57, 811, 1010, 1099
AluI AGCT 5 cut(s) 45, 57, 811, 1010, 1099
Alw21I GWGCWC 5 cut(s) 421, 664, 797, 1012, 1072
Alw26I GTCTC 5 cut(s) 145, 260, 734, 892, 959
AlwI GGATC 1 cut(s) 305
AlwNI CAGNNNCTG 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 3 cut(s) 98, 154, 267
ApeKI GCWGC 5 cut(s) 221, 494, 808, 1085, 1088
ApoI RAATTY 1 cut(s) 705
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 4 cut(s) 37, 154, 482, 586
AsuHPI GGTGA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 3 cut(s) 37, 482, 586
BanI GGYRCC 2 cut(s) 394, 425
BanII GRGCYC 2 cut(s) 183, 1012
BarI GAAGNNNNNNTAC 2 cut(s) 74, 106
Bbv12I GWGCWC 5 cut(s) 421, 664, 797, 1012, 1072
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 5 cut(s) 208, 481, 820, 1072, 1075
BccI CCATC 5 cut(s) 77, 384, 623, 779, 934
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 4 cut(s) 97, 148, 175, 606
BciVI GTATCC 1 cut(s) 827
BcoDI GTCTC 5 cut(s) 145, 260, 734, 892, 959
BfaI CTAG 3 cut(s) 102, 615, 777
BfmI CTRYAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 827
BisI GCNGC 7 cut(s) 106, 109, 222, 495, 809, 1086, 1089
BlsI GCNGC 7 cut(s) 107, 110, 223, 496, 810, 1087, 1090
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 4 cut(s) 97, 148, 175, 606
Bme18I GGWCC 3 cut(s) 37, 482, 586
BmeRI GACNNNNNGTC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 37, 154, 482, 586
BmiI GGNNCC 4 cut(s) 39, 180, 396, 427
BmrFI CCNGG 4 cut(s) 97, 148, 175, 606
BmsI GCATC 6 cut(s) 75, 339, 542, 916, 1029, 1100
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 228, 260
BpmI CTGGAG 2 cut(s) 98, 1026
Bpu10I CCTNAGC 2 cut(s) 420, 540
BsaAI YACGTR 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 700
BsaI GGTCTC 2 cut(s) 260, 959
BsaJI CCNNGG 6 cut(s) 133, 173, 174, 183, 406, 964
BsaWI WCCGGW 1 cut(s) 1078
BsaXI ACNNNNNCTCC 4 cut(s) 743, 773, 903, 933
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 574, 695, 1061
Bse1I ACTGG 2 cut(s) 1009, 1066
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 4 cut(s) 97, 148, 175, 606
BseDI CCNNGG 6 cut(s) 133, 173, 174, 183, 406, 964
BseGI GGATG 4 cut(s) 395, 771, 868, 1091
BseLI CCNNNNNNNGG 4 cut(s) 107, 574, 695, 1061
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 5 cut(s) 24, 434, 531, 614, 1025
BseNI ACTGG 2 cut(s) 1009, 1066
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 5 cut(s) 208, 481, 820, 1072, 1075
Bsh1236I CGCG 2 cut(s) 25, 74
BshFI GGCC 3 cut(s) 100, 156, 269
BshNI GGYRCC 2 cut(s) 394, 425
BsiHKAI GWGCWC 5 cut(s) 421, 664, 797, 1012, 1072
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 1079
BslFI GGGAC 2 cut(s) 23, 711
BslI CCNNNNNNNGG 4 cut(s) 107, 574, 695, 1061
BsmAI GTCTC 5 cut(s) 145, 260, 734, 892, 959
BsmFI GGGAC 2 cut(s) 23, 711
BsnI GGCC 3 cut(s) 100, 156, 269
Bso31I GGTCTC 2 cut(s) 260, 959
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 6 cut(s) 183, 421, 664, 797, 1012, 1072
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 5 cut(s) 192, 310, 513, 650, 948
BspACI CCGC 5 cut(s) 105, 108, 144, 315, 1065
BspANI GGCC 3 cut(s) 100, 156, 269
BspCNI CTCAG 5 cut(s) 23, 433, 532, 613, 1024
BspFNI CGCG 2 cut(s) 25, 74
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 4 cut(s) 39, 180, 396, 427
BspPI GGATC 1 cut(s) 305
BspT107I GGYRCC 2 cut(s) 394, 425
BspTNI GGTCTC 2 cut(s) 260, 959
BsrDI GCAATG 1 cut(s) 546
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 2 cut(s) 1009, 1066
BssECI CCNNGG 6 cut(s) 133, 173, 174, 183, 406, 964
BssMI GATC 5 cut(s) 192, 310, 513, 650, 948
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 3 cut(s) 133, 183, 406
Bst2UI CCWGG 4 cut(s) 97, 148, 175, 606
Bst4CI ACNGT 3 cut(s) 130, 416, 919
Bst6I CTCTTC 1 cut(s) 981
BstACI GRCGYC 1 cut(s) 700
BstAUI TGTACA 1 cut(s) 672
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 1 cut(s) 430
BstDEI CTNAG 7 cut(s) 10, 420, 540, 600, 639, 783, 1011
BstDSI CCRYGG 1 cut(s) 964
BstF5I GGATG 4 cut(s) 395, 771, 868, 1091
BstFNI CGCG 2 cut(s) 25, 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 5 cut(s) 195, 313, 516, 653, 951
BstMAI GTCTC 5 cut(s) 145, 260, 734, 892, 959
BstMBI GATC 5 cut(s) 192, 310, 513, 650, 948
BstMWI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
BstNI CCWGG 4 cut(s) 97, 148, 175, 606
BstSCI CCNGG 4 cut(s) 95, 146, 173, 604
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 2 cut(s) 25, 74
BstV1I GCAGC 5 cut(s) 208, 481, 820, 1072, 1075
BstXI CCANNNNNNTGG 1 cut(s) 76
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 3 cut(s) 100, 156, 269
BtgI CCRYGG 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 4 cut(s) 395, 771, 868, 1091
BtsIMutI CAGTG 2 cut(s) 421, 1019
Cac8I GCNNGC 1 cut(s) 430
CaiI CAGNNNCTG 1 cut(s) 34
CciI TCATGA 1 cut(s) 987
CfoI GCGC 1 cut(s) 76
Cfr13I GGNCC 4 cut(s) 37, 154, 482, 586
CseI GACGC 1 cut(s) 14
Csp6I GTAC 6 cut(s) 202, 228, 463, 502, 673, 712
CviAII CATG 3 cut(s) 265, 718, 988
CviQI GTAC 6 cut(s) 202, 228, 463, 502, 673, 712
DdeI CTNAG 7 cut(s) 10, 420, 540, 600, 639, 783, 1011
DpnI GATC 5 cut(s) 194, 312, 515, 652, 950
DpnII GATC 5 cut(s) 192, 310, 513, 650, 948
DrdI GACNNNNNNGTC 1 cut(s) 884
DriI GACNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 981
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 981
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 1010
Eco130I CCWWGG 3 cut(s) 133, 183, 406
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 183, 1012
Eco31I GGTCTC 2 cut(s) 260, 959
Eco47I GGWCC 3 cut(s) 37, 482, 586
Eco53kI GAGCTC 1 cut(s) 1010
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 154
EcoRII CCWGG 4 cut(s) 95, 146, 173, 604
EcoT14I CCWWGG 3 cut(s) 133, 183, 406
EcoT38I GRGCYC 2 cut(s) 183, 1012
ErhI CCWWGG 3 cut(s) 133, 183, 406
FaeI CATG 3 cut(s) 268, 721, 991
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 2 cut(s) 23, 711
FatI CATG 3 cut(s) 264, 717, 987
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 7 cut(s) 106, 109, 222, 495, 809, 1086, 1089
FokI GGATG 4 cut(s) 402, 758, 855, 1078
FriOI GRGCYC 2 cut(s) 183, 1012
Fsp4HI GCNGC 7 cut(s) 106, 109, 222, 495, 809, 1086, 1089
FspBI CTAG 3 cut(s) 102, 615, 777
GlaI GCGC 1 cut(s) 75
GluI GCNGC 7 cut(s) 106, 109, 222, 495, 809, 1086, 1089
GsuI CTGGAG 2 cut(s) 98, 1026
HaeIII GGCC 3 cut(s) 100, 156, 269
HapII CCGG 1 cut(s) 1079
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 3 cut(s) 268, 721, 991
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 3 cut(s) 138, 441, 1028
HpaII CCGG 1 cut(s) 1079
HphI GGTGA 1 cut(s) 935
Hpy166II GTNNAC 1 cut(s) 714
Hpy188I TCNGA 6 cut(s) 13, 472, 628, 650, 655, 1096
Hpy188III TCNNGA 5 cut(s) 40, 196, 457, 934, 988
Hpy8I GTNNAC 1 cut(s) 714
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 5 cut(s) 145, 219, 223, 650, 901
HpyCH4III ACNGT 3 cut(s) 130, 416, 919
HpyCH4IV ACGT 2 cut(s) 700, 837
HpyCH4V TGCA 7 cut(s) 297, 304, 432, 533, 595, 808, 1091
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
HpyF3I CTNAG 7 cut(s) 10, 420, 540, 600, 639, 783, 1011
HpySE526I ACGT 2 cut(s) 700, 837
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 3 cut(s) 268, 721, 991
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 5 cut(s) 192, 310, 513, 650, 948
LmnI GCTCC 7 cut(s) 62, 178, 361, 800, 911, 1007, 1075
Lsp1109I GCAGC 5 cut(s) 208, 481, 820, 1072, 1075
LweI GCATC 6 cut(s) 75, 339, 542, 916, 1029, 1100
MaeI CTAG 3 cut(s) 102, 615, 777
MaeII ACGT 2 cut(s) 700, 837
MaeIII GTNAC 2 cut(s) 271, 410
MalI GATC 5 cut(s) 194, 312, 515, 652, 950
MboI GATC 5 cut(s) 192, 310, 513, 650, 948
MboII GAAGA 4 cut(s) 94, 202, 949, 968
MhlI GDGCHC 6 cut(s) 183, 421, 664, 797, 1012, 1072
MluCI AATT 2 cut(s) 705, 799
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 1027
MseI TTAA 2 cut(s) 372, 1104
MslI CAYNNNNRTG 2 cut(s) 263, 719
MspI CCGG 1 cut(s) 1079
MspR9I CCNGG 4 cut(s) 97, 148, 175, 606
MvaI CCWGG 4 cut(s) 97, 148, 175, 606
MvnI CGCG 2 cut(s) 25, 74
MwoI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
NdeII GATC 5 cut(s) 192, 310, 513, 650, 948
NlaIII CATG 3 cut(s) 268, 721, 991
NlaIV GGNNCC 4 cut(s) 39, 180, 396, 427
NmuCI GTSAC 1 cut(s) 271
PagI TCATGA 1 cut(s) 987
PasI CCCWGGG 1 cut(s) 174
PceI AGGCCT 1 cut(s) 100
PfeI GAWTC 2 cut(s) 441, 1028
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 1061
PkrI GCNGC 7 cut(s) 107, 110, 223, 496, 810, 1087, 1090
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 1012
Psp6I CCWGG 4 cut(s) 95, 146, 173, 604
PspGI CCWGG 4 cut(s) 95, 146, 173, 604
PspN4I GGNNCC 4 cut(s) 39, 180, 396, 427
PspPI GGNCC 4 cut(s) 37, 154, 482, 586
PstNI CAGNNNCTG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 6 cut(s) 203, 229, 464, 503, 674, 713
RsaNI GTAC 6 cut(s) 202, 228, 463, 502, 673, 712
RseI CAYNNNNRTG 2 cut(s) 263, 719
SacI GAGCTC 1 cut(s) 1012
SaqAI TTAA 2 cut(s) 372, 1104
SatI GCNGC 7 cut(s) 106, 109, 222, 495, 809, 1086, 1089
Sau3AI GATC 5 cut(s) 192, 310, 513, 650, 948
Sau96I GGNCC 4 cut(s) 37, 154, 482, 586
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 4 cut(s) 97, 148, 175, 606
SduI GDGCHC 6 cut(s) 183, 421, 664, 797, 1012, 1072
SfaNI GCATC 6 cut(s) 75, 339, 542, 916, 1029, 1100
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 3 cut(s) 37, 482, 586
SmiMI CAYNNNNRTG 2 cut(s) 263, 719
Sse9I AATT 2 cut(s) 705, 799
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 5 cut(s) 105, 108, 144, 315, 1065
SspI AATATT 1 cut(s) 452
SspMI CTAG 3 cut(s) 102, 615, 777
SstI GAGCTC 1 cut(s) 1012
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 4 cut(s) 95, 146, 173, 604
StyI CCWWGG 3 cut(s) 133, 183, 406
TaaI ACNGT 3 cut(s) 130, 416, 919
TaiI ACGT 2 cut(s) 703, 840
TaqI TCGA 1 cut(s) 195
TaqII GACCGA 1 cut(s) 941
TasI AATT 2 cut(s) 705, 799
TatI WGTACW 5 cut(s) 201, 227, 462, 501, 672
TauI GCSGC 2 cut(s) 108, 111
TfiI GAWTC 2 cut(s) 441, 1028
Tru1I TTAA 2 cut(s) 372, 1104
Tru9I TTAA 2 cut(s) 372, 1104
TscAI CASTG 2 cut(s) 421, 1019
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 5 cut(s) 221, 494, 808, 1085, 1088
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 462, 737, 1020
TspGWI ACGGA 3 cut(s) 156, 578, 699
TspRI CASTG 2 cut(s) 421, 1019
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 1061
VpaK11BI GGWCC 3 cut(s) 37, 482, 586
XapI RAATTY 1 cut(s) 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 3 cut(s) 102, 615, 777
ZraI GACGTC 1 cut(s) 701
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.