pycom17g00340

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
211593 .. 214007
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g00340.1

Sequence Viewer

Length: 1125 bp
ATGGCTCTCTCAGACAAGCAGTCGCGTCAGGCTCTGATCCCGAGCTTCCTCTACAGCTCCTCATCCTCCATCGCGCTGGAGAAGATGCTCTATGCCAGGCCTAACGGCGGCTTCACGCCGAATGCCACCGTCGAAGGAGCCTCCGCTAGGAAGGGCCTCGTCATTCCGTCGCCCAGCGAGCCCTTGGGGAAGATCGAGATGTACTCGCCTTCCTTCTACGCTGCCTGTACGTTTGGAGGAATTCTCAGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCGGCAAAGTACAAAAGCATCACATCTGGTTTTGGAATTCTGCTCAAGGAGCAGGGAGTTAAGGGCTTTTTCAGGGGATGGGTGCCTACCCTCCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTCTATGAGTTTTTCAAGAAGTACTACTCTGACCTTGCTGGACCAGAGTTTGCTGCCAAGTACAAGACCTTGATCTACCTTGCTGGTTCTGCATCTGCTGAGGTCATTGCCGATGTTGCTCTTTGCCCCTTTGAGGCAGTCAAGGTCCGTGTGCAAACTCAGCCTGGATTTGCTAGAGGTTTGTCAGATGGACTTCCGAAGTTTGTCAGATCTGAAGGTGCTCTTGGGTTGTACAAGGGTCTTGTTCCACTATGGGGACGTCAAATTCCATACACCATGATGAAGTTTGCCTCATTTGAAACAATTGTGGAGATGATCTATAAATATGCCATCCCTAGACCTAAGAGCGAGTGCTCCAAATCTTTGCAGCTTGGTGTGAGTTTTGCTGGTGGATACGTGGCCGGTGTATTCTGTGCTATTGTATCTCATCCTGCTGACAATCTTGTCTCTTTCCTCAACAATGCCAAGGGAGCAACAGTTGGTGATGTGAGTTCTATGGCTGTGAAGAAGATTGGAGTGGTTGGTCTTTTTACCCGTGGGCTTCCTCTTCGTATTGTCATGATTGGAACTCTTACTGGAGCTCAGTGGGGTATCTATGATGCATTCAAAGTTTTTGTCGGGCTGCCAACAACTGGTGGTGCTCCCCCTCCAGTTGCTGCTGCTTCTGAGCTTGCTAAGGTGTAA

Protein Analysis

375

Amino Acids

39.85

Weight (kDa)

9.37

Isoelectric Point (pI)

39.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 73 - 157 1.4e-22 Mitochondrial carrier protein
Mito_carr PF00153 169 - 255 2.4e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013856)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
AatII GACGTC 1 cut(s) 703
AccB1I GGYRCC 2 cut(s) 394, 425
AccB7I CCANNNNNTGG 1 cut(s) 1073
AccII CGCG 2 cut(s) 25, 74
AciI CCGC 2 cut(s) 108, 144
AclWI GGATC 2 cut(s) 31, 305
AcoI YGGCCR 2 cut(s) 267, 840
AcsI RAATTY 3 cut(s) 240, 348, 705
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 6 cut(s) 203, 229, 323, 464, 503, 674
AfiI CCNNNNNNNGG 5 cut(s) 107, 147, 574, 695, 1073
AgsI TTSAA 3 cut(s) 457, 740, 1048
AhdI GACNNNNNGTC 1 cut(s) 19
AjnI CCWGG 2 cut(s) 95, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AluBI AGCT 6 cut(s) 45, 57, 249, 811, 1022, 1111
AluI AGCT 6 cut(s) 45, 57, 249, 811, 1022, 1111
Alw21I GWGCWC 5 cut(s) 421, 664, 797, 1024, 1084
Alw26I GTCTC 2 cut(s) 260, 892
AlwI GGATC 2 cut(s) 31, 305
AlwNI CAGNNNCTG 2 cut(s) 34, 1097
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 4 cut(s) 98, 154, 267, 840
ApeKI GCWGC 6 cut(s) 221, 494, 808, 1063, 1097, 1100
ApoI RAATTY 3 cut(s) 240, 348, 705
ArsI GACNNNNNNTTYG 2 cut(s) 1041, 1073
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 3 cut(s) 154, 482, 586
AsuHPI GGTGA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 482, 586
BanI GGYRCC 2 cut(s) 394, 425
BanII GRGCYC 2 cut(s) 183, 1024
Bbv12I GWGCWC 5 cut(s) 421, 664, 797, 1024, 1084
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 6 cut(s) 208, 481, 820, 1050, 1084, 1087
BccI CCATC 4 cut(s) 77, 384, 623, 779
BceAI ACGGC 2 cut(s) 121, 254
BciT130I CCWGG 2 cut(s) 97, 606
BciVI GTATCC 1 cut(s) 827
BcoDI GTCTC 2 cut(s) 260, 892
BfaI CTAG 3 cut(s) 147, 615, 777
BfmI CTRYAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 827
BglII AGATCT 1 cut(s) 650
BisI GCNGC 7 cut(s) 109, 222, 495, 809, 1064, 1098, 1101
BlsI GCNGC 7 cut(s) 110, 223, 496, 810, 1065, 1099, 1102
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 97, 606
Bme18I GGWCC 2 cut(s) 482, 586
BmeRI GACNNNNNGTC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 154, 482, 586
BmiI GGNNCC 3 cut(s) 139, 396, 427
BmrFI CCNGG 2 cut(s) 97, 606
BmsI GCATC 4 cut(s) 75, 339, 542, 1030
BplI GAGNNNNNCTC 4 cut(s) 188, 220, 228, 260
BpmI CTGGAG 3 cut(s) 98, 1038, 1074
Bpu10I CCTNAGC 3 cut(s) 420, 540, 1116
BpuEI CTTGAG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 838
BsaHI GRCGYC 1 cut(s) 700
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 4 cut(s) 183, 406, 906, 976
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 147, 574, 695, 1073
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 3 cut(s) 1021, 1078, 1091
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 2 cut(s) 97, 606
BseDI CCNNGG 4 cut(s) 183, 406, 906, 976
BseGI GGATG 4 cut(s) 62, 395, 771, 868
BseLI CCNNNNNNNGG 5 cut(s) 107, 147, 574, 695, 1073
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 7 cut(s) 24, 259, 434, 531, 614, 1037, 1098
BseNI ACTGG 3 cut(s) 1021, 1078, 1091
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 6 cut(s) 208, 481, 820, 1050, 1084, 1087
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 25, 74
BshFI GGCC 4 cut(s) 100, 156, 269, 842
BshNI GGYRCC 2 cut(s) 394, 425
BsiHKAI GWGCWC 5 cut(s) 421, 664, 797, 1024, 1084
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 2 cut(s) 314, 843
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 5 cut(s) 107, 147, 574, 695, 1073
BsmAI GTCTC 2 cut(s) 260, 892
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 2 cut(s) 127, 1043
BsnI GGCC 4 cut(s) 100, 156, 269, 842
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 6 cut(s) 183, 421, 664, 797, 1024, 1084
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 6 cut(s) 36, 192, 310, 513, 650, 756
BspACI CCGC 2 cut(s) 108, 144
BspANI GGCC 4 cut(s) 100, 156, 269, 842
BspCNI CTCAG 7 cut(s) 23, 258, 433, 532, 613, 1036, 1099
BspFNI CGCG 2 cut(s) 25, 74
BspHI TCATGA 1 cut(s) 999
BspLI GGNNCC 3 cut(s) 139, 396, 427
BspPI GGATC 2 cut(s) 31, 305
BspT107I GGYRCC 2 cut(s) 394, 425
BspTNI GGTCTC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 842
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 3 cut(s) 1021, 1078, 1091
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 4 cut(s) 183, 406, 906, 976
BssMI GATC 6 cut(s) 36, 192, 310, 513, 650, 756
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 3 cut(s) 183, 406, 906
Bst2UI CCWGG 2 cut(s) 97, 606
Bst4CI ACNGT 3 cut(s) 130, 416, 919
Bst6I CTCTTC 1 cut(s) 993
BstACI GRCGYC 1 cut(s) 700
BstAUI TGTACA 1 cut(s) 672
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 3 cut(s) 179, 430, 1113
BstDEI CTNAG 9 cut(s) 10, 245, 420, 540, 600, 783, 1023, 1107, 1116
BstDSI CCRYGG 1 cut(s) 976
BstENI CCTNNNNNAGG 1 cut(s) 145
BstF5I GGATG 4 cut(s) 62, 395, 771, 868
BstFNI CGCG 2 cut(s) 25, 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 6 cut(s) 39, 195, 313, 516, 653, 759
BstMAI GTCTC 2 cut(s) 260, 892
BstMBI GATC 6 cut(s) 36, 192, 310, 513, 650, 756
BstMWI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
BstNI CCWGG 2 cut(s) 97, 606
BstSCI CCNGG 2 cut(s) 95, 604
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 2 cut(s) 25, 74
BstV1I GCAGC 6 cut(s) 208, 481, 820, 1050, 1084, 1087
BstX2I RGATCY 1 cut(s) 650
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 1 cut(s) 650
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 4 cut(s) 100, 156, 269, 842
BtgI CCRYGG 1 cut(s) 976
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 4 cut(s) 62, 395, 771, 868
BtsIMutI CAGTG 2 cut(s) 421, 1031
Cac8I GCNNGC 3 cut(s) 179, 430, 1113
CaiI CAGNNNCTG 2 cut(s) 34, 1097
CciI TCATGA 1 cut(s) 999
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 3 cut(s) 154, 482, 586
CseI GACGC 1 cut(s) 14
Csp6I GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
CviAII CATG 3 cut(s) 265, 718, 1000
CviQI GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
DdeI CTNAG 9 cut(s) 10, 245, 420, 540, 600, 783, 1023, 1107, 1116
DpnI GATC 6 cut(s) 38, 194, 312, 515, 652, 758
DpnII GATC 6 cut(s) 36, 192, 310, 513, 650, 756
DrdI GACNNNNNNGTC 1 cut(s) 884
DriI GACNNNNNGTC 1 cut(s) 19
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 2 cut(s) 267, 840
Eam1104I CTCTTC 1 cut(s) 993
Eam1105I GACNNNNNGTC 1 cut(s) 19
EarI CTCTTC 1 cut(s) 993
Ecl136II GAGCTC 1 cut(s) 1022
Eco130I CCWWGG 3 cut(s) 183, 406, 906
Eco147I AGGCCT 1 cut(s) 100
Eco24I GRGCYC 2 cut(s) 183, 1024
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 2 cut(s) 482, 586
Eco53kI GAGCTC 1 cut(s) 1022
Eco57I CTGAAG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 1022
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 2 cut(s) 240, 348
EcoRII CCWGG 2 cut(s) 95, 604
EcoT14I CCWWGG 3 cut(s) 183, 406, 906
EcoT22I ATGCAT 1 cut(s) 1045
EcoT38I GRGCYC 2 cut(s) 183, 1024
ErhI CCWWGG 3 cut(s) 183, 406, 906
FaeI CATG 3 cut(s) 268, 721, 1003
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 1 cut(s) 711
FatI CATG 3 cut(s) 264, 717, 999
Fnu4HI GCNGC 7 cut(s) 109, 222, 495, 809, 1064, 1098, 1101
FokI GGATG 4 cut(s) 49, 402, 758, 855
FriOI GRGCYC 2 cut(s) 183, 1024
Fsp4HI GCNGC 7 cut(s) 109, 222, 495, 809, 1064, 1098, 1101
FspBI CTAG 3 cut(s) 147, 615, 777
GlaI GCGC 1 cut(s) 75
GluI GCNGC 7 cut(s) 109, 222, 495, 809, 1064, 1098, 1101
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 3 cut(s) 98, 1038, 1074
HaeIII GGCC 4 cut(s) 100, 156, 269, 842
HapII CCGG 2 cut(s) 314, 843
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 3 cut(s) 268, 721, 1003
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 1 cut(s) 441
HpaII CCGG 2 cut(s) 314, 843
HphI GGTGA 1 cut(s) 935
Hpy188I TCNGA 8 cut(s) 13, 36, 472, 628, 639, 650, 655, 1108
Hpy188III TCNNGA 4 cut(s) 40, 196, 457, 1000
Hpy99I CGWCG 2 cut(s) 134, 172
HpyAV CCTTC 5 cut(s) 128, 145, 219, 223, 650
HpyCH4III ACNGT 3 cut(s) 130, 416, 919
HpyCH4IV ACGT 3 cut(s) 230, 700, 837
HpyCH4V TGCA 7 cut(s) 297, 304, 432, 533, 595, 808, 1043
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
HpyF3I CTNAG 9 cut(s) 10, 245, 420, 540, 600, 783, 1023, 1107, 1116
HpySE526I ACGT 3 cut(s) 230, 700, 837
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 3 cut(s) 268, 721, 1003
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 6 cut(s) 36, 192, 310, 513, 650, 756
LmnI GCTCC 7 cut(s) 62, 137, 361, 800, 911, 1019, 1087
Lsp1109I GCAGC 6 cut(s) 208, 481, 820, 1050, 1084, 1087
LweI GCATC 4 cut(s) 75, 339, 542, 1030
MaeI CTAG 3 cut(s) 147, 615, 777
MaeII ACGT 3 cut(s) 230, 700, 837
MaeIII GTNAC 2 cut(s) 271, 410
MalI GATC 6 cut(s) 38, 194, 312, 515, 652, 758
MboI GATC 6 cut(s) 36, 192, 310, 513, 650, 756
MboII GAAGA 5 cut(s) 94, 202, 958, 961, 980
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 1 cut(s) 650
MhlI GDGCHC 6 cut(s) 183, 421, 664, 797, 1024, 1084
MluCI AATT 4 cut(s) 240, 348, 705, 744
Mph1103I ATGCAT 1 cut(s) 1045
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 2 cut(s) 263, 719
MspA1I CMGCKG 1 cut(s) 249
MspI CCGG 2 cut(s) 314, 843
MspR9I CCNGG 2 cut(s) 97, 606
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 127, 1043
MvaI CCWGG 2 cut(s) 97, 606
MvnI CGCG 2 cut(s) 25, 74
MwoI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
NdeII GATC 6 cut(s) 36, 192, 310, 513, 650, 756
NlaIII CATG 3 cut(s) 268, 721, 1003
NlaIV GGNNCC 3 cut(s) 139, 396, 427
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 1045
PagI TCATGA 1 cut(s) 999
PceI AGGCCT 1 cut(s) 100
PctI GAATGC 2 cut(s) 127, 1043
PfeI GAWTC 1 cut(s) 441
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 1073
PkrI GCNGC 7 cut(s) 110, 223, 496, 810, 1065, 1099, 1102
Ppu21I YACGTR 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 1024
Psp6I CCWGG 2 cut(s) 95, 604
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 2 cut(s) 95, 604
PspN4I GGNNCC 3 cut(s) 139, 396, 427
PspPI GGNCC 3 cut(s) 154, 482, 586
PstNI CAGNNNCTG 2 cut(s) 34, 1097
PsuI RGATCY 1 cut(s) 650
PsyI GACNNNGTC 1 cut(s) 287
PvuII CAGCTG 1 cut(s) 249
RsaI GTAC 6 cut(s) 203, 229, 323, 464, 503, 674
RsaNI GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
RseI CAYNNNNRTG 2 cut(s) 263, 719
SacI GAGCTC 1 cut(s) 1024
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 7 cut(s) 109, 222, 495, 809, 1064, 1098, 1101
Sau3AI GATC 6 cut(s) 36, 192, 310, 513, 650, 756
Sau96I GGNCC 3 cut(s) 154, 482, 586
ScaI AGTACT 1 cut(s) 464
ScrFI CCNGG 2 cut(s) 97, 606
SduI GDGCHC 6 cut(s) 183, 421, 664, 797, 1024, 1084
SfaNI GCATC 4 cut(s) 75, 339, 542, 1030
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 2 cut(s) 482, 586
SmiMI CAYNNNNRTG 2 cut(s) 263, 719
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 240, 348, 705, 744
SseBI AGGCCT 1 cut(s) 100
SsiI CCGC 2 cut(s) 108, 144
SspMI CTAG 3 cut(s) 147, 615, 777
SstI GAGCTC 1 cut(s) 1024
StuI AGGCCT 1 cut(s) 100
StyD4I CCNGG 2 cut(s) 95, 604
StyI CCWWGG 3 cut(s) 183, 406, 906
TaaI ACNGT 3 cut(s) 130, 416, 919
TaiI ACGT 3 cut(s) 233, 703, 840
TaqI TCGA 2 cut(s) 132, 195
TasI AATT 4 cut(s) 240, 348, 705, 744
TatI WGTACW 5 cut(s) 201, 321, 462, 501, 672
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 421, 1031
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 6 cut(s) 221, 494, 808, 1063, 1097, 1100
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 737
TspGWI ACGGA 2 cut(s) 156, 578
TspRI CASTG 2 cut(s) 421, 1031
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 1073
VpaK11BI GGWCC 2 cut(s) 482, 586
XagI CCTNNNNNAGG 1 cut(s) 145
XapI RAATTY 3 cut(s) 240, 348, 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XspI CTAG 3 cut(s) 147, 615, 777
ZraI GACGTC 1 cut(s) 701
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.