MD17G1007900.v1.1

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
519380 .. 522568
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1007900.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGCTCTCTCAGATAAGCAGTCGCGTCAGGCTCTGATCCCGAGCTTCCTCTACAGATCCTCATCCTCCATCGCGCTGGAGAAGATGCTCTACGCCAGGCCTAACGGCGGCTTCACGCCGAATGCCACCGTCGAAGGAGTCTCCGCCAGGAAGGGCCTCGTCATTCCGTCGCCCAGCGAGCCCTTGGGGAAGATCGAGATGTACTCGCCTTCCTTCTACGCTGCCTGTACTTTTGGAGGAATTCTTAGCTGTGGTCTCACTCACATGGCCGTCACTCCCCTTGACCTCGTCAAGTGCAATATGCAGATTGATCCTGCAAAGTACAAAAGCATCACATCTGGTTTTGGAATTCTGCTCAAGGAGCAGGGAGTTAAGGGCTTTTTCAGGGGATGGGTGCCTACCCTCCTTGGTTACAGTGCTCAGGGTGCCTGCAAGTTTGGATTCTATGAGTTTTTCAAGAAGTACTACTCTGACCTTGCTGGACCAGAGTTTGCTGCCAAGTACAAGACCTTGATCTACCTTGCTGGTTCTGCATCTGCTGAGGTCATTGCCGATGTTGCTCTTTGCCCCTTTGAGGCAGTCAAGGTCCGTGTGCAAACTCAGCCTGGATTTGCTAGAGGTTTGTCAGATGGACTTCCTAAGTTTGTCAGATCTGAAGGTGCTCTTGGGTTGTACAAGGGTCTTGTTCCACTATGGGGACGTCAAATTCCATACACCATGATGAAGTTTGCCTCATTTGAAACAATTGTGGAGATGATCTATAAATATGCCATCCCTAGGCCTAAGAGCGAGTGCTCCAAATCTTTGCAGCTTGGTGTGAGTTTTGCTGGTGGATACGTGGCCGGTGTATTCTGTGCTATTGTATCTCATCCTGCTGACAATCTTGTCTCTTTCCTCAACAATGCCAAAGGAGCAACAGTTGGTGATGCTGTGAAGAAGATTGGAGTGGTTGGTCTCTTTACCCGTGGGCTTCCTCTTCGGATTGTCATGATTGGAACTCTTACTGGAGCTCAGTGGGGTATCTATGATGCATTCAAAGTTTTTGTCGGGCTGCCAACAACTGGTGGTGCTCCCCCTCCAGTTGCTGCTGCTTCTGAGCTTTCTAAGGTGTAA

Protein Analysis

371

Amino Acids

39.56

Weight (kDa)

9.42

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 73 - 157 1.4e-22 Mitochondrial carrier protein
Mito_carr PF00153 169 - 255 2.3e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013856)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 884
AatII GACGTC 1 cut(s) 703
AccB1I GGYRCC 2 cut(s) 394, 425
AccB7I CCANNNNNTGG 1 cut(s) 1061
AccII CGCG 2 cut(s) 25, 74
AciI CCGC 2 cut(s) 108, 144
AclWI GGATC 3 cut(s) 31, 51, 305
AcoI YGGCCR 2 cut(s) 267, 840
AcsI RAATTY 3 cut(s) 240, 348, 705
AcuI CTGAAG 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 6 cut(s) 203, 229, 323, 464, 503, 674
AfiI CCNNNNNNNGG 5 cut(s) 107, 574, 695, 777, 1061
AgsI TTSAA 3 cut(s) 457, 740, 1036
AjnI CCWGG 3 cut(s) 95, 146, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 648, 680
AluBI AGCT 5 cut(s) 45, 249, 811, 1010, 1099
AluI AGCT 5 cut(s) 45, 249, 811, 1010, 1099
Alw21I GWGCWC 5 cut(s) 421, 664, 797, 1012, 1072
Alw26I GTCTC 4 cut(s) 145, 260, 892, 959
AlwI GGATC 3 cut(s) 31, 51, 305
AlwNI CAGNNNCTG 2 cut(s) 34, 1085
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 5 cut(s) 98, 154, 267, 779, 840
ApeKI GCWGC 6 cut(s) 221, 494, 808, 1051, 1085, 1088
ApoI RAATTY 3 cut(s) 240, 348, 705
ArsI GACNNNNNNTTYG 2 cut(s) 1029, 1061
AspA2I CCTAGG 1 cut(s) 776
AspLEI GCGC 1 cut(s) 76
AspS9I GGNCC 3 cut(s) 154, 482, 586
AsuHPI GGTGA 1 cut(s) 935
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 2 cut(s) 482, 586
AvrII CCTAGG 1 cut(s) 776
BanI GGYRCC 2 cut(s) 394, 425
BanII GRGCYC 2 cut(s) 183, 1012
BarI GAAGNNNNNNTAC 2 cut(s) 74, 106
Bbv12I GWGCWC 5 cut(s) 421, 664, 797, 1012, 1072
BbvCI CCTCAGC 1 cut(s) 540
BbvI GCAGC 6 cut(s) 208, 481, 820, 1038, 1072, 1075
BccI CCATC 4 cut(s) 77, 384, 623, 779
BceAI ACGGC 2 cut(s) 121, 254
BciT130I CCWGG 3 cut(s) 97, 148, 606
BciVI GTATCC 1 cut(s) 827
BcoDI GTCTC 4 cut(s) 145, 260, 892, 959
BfaI CTAG 2 cut(s) 615, 777
BfmI CTRYAG 1 cut(s) 52
BfuI GTATCC 1 cut(s) 827
BglII AGATCT 1 cut(s) 650
BisI GCNGC 7 cut(s) 109, 222, 495, 809, 1052, 1086, 1089
BlnI CCTAGG 1 cut(s) 776
BlsI GCNGC 7 cut(s) 110, 223, 496, 810, 1053, 1087, 1090
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 97, 148, 606
Bme18I GGWCC 2 cut(s) 482, 586
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 154, 482, 586
BmiI GGNNCC 2 cut(s) 396, 427
BmrFI CCNGG 3 cut(s) 97, 148, 606
BmsI GCATC 5 cut(s) 75, 339, 542, 916, 1018
BplI GAGNNNNNCTC 2 cut(s) 188, 220
BpmI CTGGAG 3 cut(s) 98, 1026, 1062
Bpu10I CCTNAGC 2 cut(s) 420, 540
BpuEI CTTGAG 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 61
BsaHI GRCGYC 1 cut(s) 700
BsaI GGTCTC 2 cut(s) 260, 959
BsaJI CCNNGG 4 cut(s) 183, 406, 776, 964
BsaXI ACNNNNNCTCC 2 cut(s) 903, 933
Bsc4I CCNNNNNNNGG 5 cut(s) 107, 574, 695, 777, 1061
Bse118I RCCGGY 1 cut(s) 842
Bse1I ACTGG 3 cut(s) 1009, 1066, 1079
Bse3DI GCAATG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 61
BseBI CCWGG 3 cut(s) 97, 148, 606
BseDI CCNNGG 4 cut(s) 183, 406, 776, 964
BseGI GGATG 4 cut(s) 62, 395, 771, 868
BseJI GATNNNNATC 1 cut(s) 61
BseLI CCNNNNNNNGG 5 cut(s) 107, 574, 695, 777, 1061
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 6 cut(s) 24, 434, 531, 614, 1025, 1086
BseNI ACTGG 3 cut(s) 1009, 1066, 1079
BseXI GCAGC 6 cut(s) 208, 481, 820, 1038, 1072, 1075
BseYI CCCAGC 1 cut(s) 173
Bsh1236I CGCG 2 cut(s) 25, 74
BshFI GGCC 5 cut(s) 100, 156, 269, 781, 842
BshNI GGYRCC 2 cut(s) 394, 425
BsiHKAI GWGCWC 5 cut(s) 421, 664, 797, 1012, 1072
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 5 cut(s) 107, 574, 695, 777, 1061
BsmAI GTCTC 4 cut(s) 145, 260, 892, 959
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 2 cut(s) 127, 1031
BsnI GGCC 5 cut(s) 100, 156, 269, 781, 842
Bso31I GGTCTC 2 cut(s) 260, 959
BsoBI CYCGRG 1 cut(s) 40
Bsp1286I GDGCHC 6 cut(s) 183, 421, 664, 797, 1012, 1072
Bsp1407I TGTACA 1 cut(s) 672
Bsp143I GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
BspACI CCGC 2 cut(s) 108, 144
BspANI GGCC 5 cut(s) 100, 156, 269, 781, 842
BspCNI CTCAG 6 cut(s) 23, 433, 532, 613, 1024, 1087
BspFNI CGCG 2 cut(s) 25, 74
BspHI TCATGA 1 cut(s) 987
BspLI GGNNCC 2 cut(s) 396, 427
BspPI GGATC 3 cut(s) 31, 51, 305
BspT107I GGYRCC 2 cut(s) 394, 425
BspTNI GGTCTC 2 cut(s) 260, 959
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 1 cut(s) 842
BsrGI TGTACA 1 cut(s) 672
BsrI ACTGG 3 cut(s) 1009, 1066, 1079
BssAI RCCGGY 1 cut(s) 842
BssECI CCNNGG 4 cut(s) 183, 406, 776, 964
BssMI GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 3 cut(s) 183, 406, 776
Bst2UI CCWGG 3 cut(s) 97, 148, 606
Bst4CI ACNGT 3 cut(s) 130, 416, 919
Bst6I CTCTTC 1 cut(s) 981
BstACI GRCGYC 1 cut(s) 700
BstAUI TGTACA 1 cut(s) 672
BstBAI YACGTR 1 cut(s) 838
BstC8I GCNNGC 2 cut(s) 179, 430
BstDSI CCRYGG 1 cut(s) 964
BstF5I GGATG 4 cut(s) 62, 395, 771, 868
BstFNI CGCG 2 cut(s) 25, 74
BstHHI GCGC 1 cut(s) 76
BstKTI GATC 7 cut(s) 39, 59, 195, 313, 516, 653, 759
BstMAI GTCTC 4 cut(s) 145, 260, 892, 959
BstMBI GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
BstMWI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
BstNI CCWGG 3 cut(s) 97, 148, 606
BstSCI CCNGG 3 cut(s) 95, 146, 604
BstSFI CTRYAG 1 cut(s) 52
BstUI CGCG 2 cut(s) 25, 74
BstV1I GCAGC 6 cut(s) 208, 481, 820, 1038, 1072, 1075
BstX2I RGATCY 2 cut(s) 56, 650
BstXI CCANNNNNNTGG 1 cut(s) 76
BstYI RGATCY 2 cut(s) 56, 650
BsuI GTATCC 1 cut(s) 827
BsuRI GGCC 5 cut(s) 100, 156, 269, 781, 842
BtgI CCRYGG 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 55
BtsCI GGATG 4 cut(s) 62, 395, 771, 868
BtsIMutI CAGTG 2 cut(s) 421, 1019
Cac8I GCNNGC 2 cut(s) 179, 430
CaiI CAGNNNCTG 2 cut(s) 34, 1085
CciI TCATGA 1 cut(s) 987
CfoI GCGC 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 842
Cfr13I GGNCC 3 cut(s) 154, 482, 586
CseI GACGC 1 cut(s) 14
Csp6I GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
CviAII CATG 3 cut(s) 265, 718, 988
CviQI GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
DpnI GATC 7 cut(s) 38, 58, 194, 312, 515, 652, 758
DpnII GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
DrdI GACNNNNNNGTC 1 cut(s) 884
DseDI GACNNNNNNGTC 1 cut(s) 884
EaeI YGGCCR 2 cut(s) 267, 840
Eam1104I CTCTTC 1 cut(s) 981
EarI CTCTTC 1 cut(s) 981
EciI GGCGGA 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 1010
Eco130I CCWWGG 3 cut(s) 183, 406, 776
Eco147I AGGCCT 2 cut(s) 100, 781
Eco24I GRGCYC 2 cut(s) 183, 1012
Eco31I GGTCTC 2 cut(s) 260, 959
Eco47I GGWCC 2 cut(s) 482, 586
Eco53kI GAGCTC 1 cut(s) 1010
Eco57I CTGAAG 1 cut(s) 675
Eco88I CYCGRG 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 1010
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 2 cut(s) 240, 348
EcoRII CCWGG 3 cut(s) 95, 146, 604
EcoT14I CCWWGG 3 cut(s) 183, 406, 776
EcoT22I ATGCAT 1 cut(s) 1033
EcoT38I GRGCYC 2 cut(s) 183, 1012
ErhI CCWWGG 3 cut(s) 183, 406, 776
FaeI CATG 3 cut(s) 268, 721, 991
FalI AAGNNNNNCTT 2 cut(s) 648, 680
FaqI GGGAC 1 cut(s) 711
FatI CATG 3 cut(s) 264, 717, 987
Fnu4HI GCNGC 7 cut(s) 109, 222, 495, 809, 1052, 1086, 1089
FokI GGATG 4 cut(s) 49, 402, 758, 855
FriOI GRGCYC 2 cut(s) 183, 1012
Fsp4HI GCNGC 7 cut(s) 109, 222, 495, 809, 1052, 1086, 1089
FspBI CTAG 2 cut(s) 615, 777
GlaI GCGC 1 cut(s) 75
GluI GCNGC 7 cut(s) 109, 222, 495, 809, 1052, 1086, 1089
GsaI CCCAGC 1 cut(s) 177
GsuI CTGGAG 3 cut(s) 98, 1026, 1062
HaeIII GGCC 5 cut(s) 100, 156, 269, 781, 842
HapII CCGG 1 cut(s) 843
HgaI GACGC 1 cut(s) 14
HhaI GCGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 3 cut(s) 268, 721, 991
Hin6I GCGC 1 cut(s) 74
HinP1I GCGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 138, 441
HpaII CCGG 1 cut(s) 843
HphI GGTGA 1 cut(s) 935
Hpy188I TCNGA 8 cut(s) 13, 36, 472, 628, 650, 655, 981, 1096
Hpy188III TCNNGA 4 cut(s) 40, 196, 457, 988
Hpy99I CGWCG 2 cut(s) 134, 172
HpyAV CCTTC 5 cut(s) 128, 145, 219, 223, 650
HpyCH4III ACNGT 3 cut(s) 130, 416, 919
HpyCH4IV ACGT 2 cut(s) 700, 837
HpyCH4V TGCA 8 cut(s) 297, 304, 317, 432, 533, 595, 808, 1031
HpyF10VI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
HpySE526I ACGT 2 cut(s) 700, 837
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 3 cut(s) 268, 721, 991
HspAI GCGC 1 cut(s) 74
Kzo9I GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
LmnI GCTCC 5 cut(s) 361, 800, 911, 1007, 1075
Lsp1109I GCAGC 6 cut(s) 208, 481, 820, 1038, 1072, 1075
LweI GCATC 5 cut(s) 75, 339, 542, 916, 1018
MaeI CTAG 2 cut(s) 615, 777
MaeII ACGT 2 cut(s) 700, 837
MaeIII GTNAC 2 cut(s) 271, 410
MalI GATC 7 cut(s) 38, 58, 194, 312, 515, 652, 758
MboI GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
MboII GAAGA 5 cut(s) 94, 202, 946, 949, 968
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 2 cut(s) 56, 650
MhlI GDGCHC 6 cut(s) 183, 421, 664, 797, 1012, 1072
MluCI AATT 4 cut(s) 240, 348, 705, 744
MlyI GAGTC 1 cut(s) 147
Mph1103I ATGCAT 1 cut(s) 1033
MseI TTAA 1 cut(s) 372
MslI CAYNNNNRTG 2 cut(s) 263, 719
MspI CCGG 1 cut(s) 843
MspR9I CCNGG 3 cut(s) 97, 148, 606
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 2 cut(s) 127, 1031
MvaI CCWGG 3 cut(s) 97, 148, 606
MvnI CGCG 2 cut(s) 25, 74
MwoI GCNNNNNNNGC 7 cut(s) 178, 361, 425, 530, 557, 601, 911
NdeII GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
NlaIII CATG 3 cut(s) 268, 721, 991
NlaIV GGNNCC 2 cut(s) 396, 427
NmuCI GTSAC 1 cut(s) 271
NsiI ATGCAT 1 cut(s) 1033
PagI TCATGA 1 cut(s) 987
PceI AGGCCT 2 cut(s) 100, 781
PctI GAATGC 2 cut(s) 127, 1031
PfeI GAWTC 1 cut(s) 441
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 1061
PkrI GCNGC 7 cut(s) 110, 223, 496, 810, 1053, 1087, 1090
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 838
Psp124BI GAGCTC 1 cut(s) 1012
Psp6I CCWGG 3 cut(s) 95, 146, 604
PspFI CCCAGC 1 cut(s) 173
PspGI CCWGG 3 cut(s) 95, 146, 604
PspN4I GGNNCC 2 cut(s) 396, 427
PspPI GGNCC 3 cut(s) 154, 482, 586
PstNI CAGNNNCTG 2 cut(s) 34, 1085
PsuI RGATCY 2 cut(s) 56, 650
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 6 cut(s) 203, 229, 323, 464, 503, 674
RsaNI GTAC 6 cut(s) 202, 228, 322, 463, 502, 673
RseI CAYNNNNRTG 2 cut(s) 263, 719
SacI GAGCTC 1 cut(s) 1012
SaqAI TTAA 1 cut(s) 372
SatI GCNGC 7 cut(s) 109, 222, 495, 809, 1052, 1086, 1089
Sau3AI GATC 7 cut(s) 36, 56, 192, 310, 513, 650, 756
Sau96I GGNCC 3 cut(s) 154, 482, 586
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 3 cut(s) 97, 148, 606
SduI GDGCHC 6 cut(s) 183, 421, 664, 797, 1012, 1072
SfaNI GCATC 5 cut(s) 75, 339, 542, 916, 1018
SfcI CTRYAG 1 cut(s) 52
SinI GGWCC 2 cut(s) 482, 586
SmiMI CAYNNNNRTG 2 cut(s) 263, 719
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 4 cut(s) 240, 348, 705, 744
SseBI AGGCCT 2 cut(s) 100, 781
SsiI CCGC 2 cut(s) 108, 144
SspMI CTAG 2 cut(s) 615, 777
SstI GAGCTC 1 cut(s) 1012
StuI AGGCCT 2 cut(s) 100, 781
StyD4I CCNGG 3 cut(s) 95, 146, 604
StyI CCWWGG 3 cut(s) 183, 406, 776
TaaI ACNGT 3 cut(s) 130, 416, 919
TaiI ACGT 2 cut(s) 703, 840
TaqI TCGA 2 cut(s) 132, 195
TasI AATT 4 cut(s) 240, 348, 705, 744
TatI WGTACW 6 cut(s) 201, 227, 321, 462, 501, 672
TauI GCSGC 1 cut(s) 111
TfiI GAWTC 1 cut(s) 441
Tru1I TTAA 1 cut(s) 372
Tru9I TTAA 1 cut(s) 372
TscAI CASTG 2 cut(s) 421, 1019
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 6 cut(s) 221, 494, 808, 1051, 1085, 1088
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 737
TspGWI ACGGA 2 cut(s) 156, 578
TspRI CASTG 2 cut(s) 421, 1019
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 1061
VpaK11BI GGWCC 2 cut(s) 482, 586
XapI RAATTY 3 cut(s) 240, 348, 705
XcmI CCANNNNNNNNNTGG 1 cut(s) 181
XmaJI CCTAGG 1 cut(s) 776
XspI CTAG 2 cut(s) 615, 777
ZraI GACGTC 1 cut(s) 701
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.