Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8088082.1

Orthogroup ID

OG0013856

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 435

Gene Structure 435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8088082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 335 bp

atgatgaagtttgcatcctttgaggccattgtggagaatatctataaatatgccatccctacacctaaagatgagtgctccaaaagtttgcagctgggtgtgagttttgctggtggatatgtggctggtgttttctgtgctattgtgtctcaccctgctgacaatcttgtctcttttctcaacaatgccaaaggggcaactgttggtgatgctgtgaagaagattggagtgttgggtctgtttacccgtgggcttcccctccgtattgtcatgattggaactcttaccggagctcagtggggtatctacgatgcattcaaagtttttgttggact

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006817 GO:0006820 GO:0006839 GO:0006950 GO:0006970 GO:0008150 GO:0008509 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0015075 GO:0015103 GO:0015114 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0034220 GO:0035435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098588 GO:0098656 GO:0098660 GO:0098661 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

112

Amino Acids

11.91

Weight (kDa)

8.98

Isoelectric Point (pI)

15.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013856)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14040
fragaria_vesca	FvH4_6g54190
malus_domestica	MD09G1004400.v1.1 MD17G1007900.v1.1
prunus_persica	Prupe.3G312300_v2.0.a1
pyrus_communis	pycom111g00320 pycom17g00340
rosa_chinensis	RchiOBHm_Chr2g0176371
rosa_laevigata	RLG00000022407
rosa_multiflora	Rmu_co8088082.1_g000001 Rmu_sc0009140.1_g000002 Rmu_sc0027060.1_g000005
rosa_roxburghii	Rroxscaffold_2G00076530
rosa_rugosa	Rorug02G0593700
rosa_samantha	Rh2AG672100 Rh2CG646300
rosa_wichuraiana	Rw2G055120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	319
AluBI	AGCT	2 cut(s)	94, 293
AluI	AGCT	2 cut(s)	94, 293
Alw21I	GWGCWC	2 cut(s)	80, 295
Alw26I	GTCTC	2 cut(s)	153, 175
AoxI	GGCC	1 cut(s)	24
ApeKI	GCWGC	1 cut(s)	91
AsuHPI	GGTGA	2 cut(s)	143, 218
BanII	GRGCYC	1 cut(s)	295
Bbv12I	GWGCWC	2 cut(s)	80, 295
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	153, 175
BglI	GCCNNNNNGGC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	92
BlsI	GCNGC	1 cut(s)	93
BmsI	GCATC	3 cut(s)	23, 199, 301
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	287
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	2 cut(s)	14, 54
BseMII	CTCAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	94
BshFI	GGCC	1 cut(s)	26
BsiHKAI	GWGCWC	2 cut(s)	80, 295
BsiSI	CCGG	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	153, 175
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	80, 295
BspANI	GGCC	1 cut(s)	26
BspCNI	CTCAG	1 cut(s)	307
BspHI	TCATGA	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	202
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	14, 54
BstMAI	GTCTC	2 cut(s)	153, 175
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	26
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	14, 54
BtsIMutI	CAGTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	270
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	5 cut(s)	26, 94, 125, 253, 293
CviKI_1	RGCY	5 cut(s)	26, 94, 125, 253, 293
DdeI	CTNAG	1 cut(s)	294
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	316
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	1 cut(s)	274
FaiI	YATR	4 cut(s)	45, 51, 120, 272
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	92
FokI	GGATG	1 cut(s)	41
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	92
GluI	GCNGC	1 cut(s)	92
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	26
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	1 cut(s)	274
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	143, 218
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	14, 91, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	1 cut(s)	294
Hsp92II	CATG	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	83, 290
LpnPI	CCDG	5 cut(s)	80, 96, 111, 168, 301
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	3 cut(s)	23, 199, 301
MboII	GAAGA	2 cut(s)	229, 232
MhlI	GDGCHC	2 cut(s)	80, 295
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	2 cut(s)	16, 269
Mph1103I	ATGCAT	1 cut(s)	316
MspA1I	CMGCKG	1 cut(s)	94
MspI	CCGG	1 cut(s)	288
Mva1269I	GAATGC	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	316
PagI	TCATGA	1 cut(s)	270
PctI	GAATGC	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	93
Psp124BI	GAGCTC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	94
PvuII	CAGCTG	1 cut(s)	94
SacI	GAGCTC	1 cut(s)	295
SatI	GCNGC	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	80, 295
SetI	ASST	3 cut(s)	67, 96, 295
SfaNI	GCATC	3 cut(s)	23, 199, 301
SgeI	CNNG	9 cut(s)	107, 123, 138, 167, 179, 258, 260, 283, 300
SstI	GAGCTC	1 cut(s)	295
TaaI	ACNGT	1 cut(s)	202
TscAI	CASTG	1 cut(s)	302
TseI	GCWGC	1 cut(s)	91
TspDTI	ATGAA	1 cut(s)	20
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.