motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G14250 AT5G14250 |
| fragaria_vesca | FvH4_6g52990 FvH4_6g52990 |
| malus_domestica | MD09G1015400.v1.1 MD17G1015500.v1.1 |
| prunus_persica | Prupe.3G302400_v2.0.a1 |
| pyrus_communis | pycom111g01250 pycom16g21030 pycom17g01270 |
| rosa_chinensis | RchiOBHm_Chr2g0174731 |
| rosa_laevigata | RLG00000022291 |
| rosa_multiflora | Rmu_ssc0000313.1_g000004 |
| rosa_roxburghii | Rroxscaffold_2G00077780 |
| rosa_rugosa | Rorug02G0579100 |
| rosa_samantha | Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800 |
| rosa_wichuraiana | Rw2G054100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1070 |
| AciI | CCGC | 1 cut(s) | 1001 |
| AclWI | GGATC | 2 cut(s) | 356, 1018 |
| AcoI | YGGCCR | 1 cut(s) | 840 |
| AcsI | RAATTY | 2 cut(s) | 311, 854 |
| AcuI | CTGAAG | 3 cut(s) | 392, 602, 1001 |
| AcyI | GRCGYC | 1 cut(s) | 162 |
| AfaI | GTAC | 6 cut(s) | 479, 668, 677, 941, 1100, 1241 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AgsI | TTSAA | 6 cut(s) | 337, 455, 760, 785, 860, 959 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1152 |
| AjnI | CCWGG | 3 cut(s) | 127, 842, 1026 |
| Alw21I | GWGCWC | 1 cut(s) | 106 |
| Alw26I | GTCTC | 4 cut(s) | 418, 528, 693, 1245 |
| AlwI | GGATC | 2 cut(s) | 356, 1018 |
| AoxI | GGCC | 2 cut(s) | 380, 840 |
| ApeKI | GCWGC | 2 cut(s) | 236, 743 |
| ApoI | RAATTY | 2 cut(s) | 311, 854 |
| AspS9I | GGNCC | 5 cut(s) | 215, 380, 773, 976, 1087 |
| AsuHPI | GGTGA | 1 cut(s) | 830 |
| AvaII | GGWCC | 4 cut(s) | 215, 773, 976, 1087 |
| BalI | TGGCCA | 1 cut(s) | 842 |
| BanII | GRGCYC | 1 cut(s) | 106 |
| Bbv12I | GWGCWC | 1 cut(s) | 106 |
| BbvI | GCAGC | 2 cut(s) | 223, 755 |
| BccI | CCATC | 2 cut(s) | 1025, 1063 |
| BciT130I | CCWGG | 3 cut(s) | 129, 844, 1028 |
| BcoDI | GTCTC | 4 cut(s) | 418, 528, 693, 1245 |
| BfaI | CTAG | 2 cut(s) | 824, 1107 |
| BfmI | CTRYAG | 2 cut(s) | 547, 738 |
| BisI | GCNGC | 2 cut(s) | 237, 744 |
| BlsI | GCNGC | 2 cut(s) | 238, 745 |
| BmcAI | AGTACT | 1 cut(s) | 941 |
| Bme1390I | CCNGG | 3 cut(s) | 129, 844, 1028 |
| Bme18I | GGWCC | 4 cut(s) | 215, 773, 976, 1087 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1152 |
| BmgT120I | GGNCC | 5 cut(s) | 215, 380, 773, 976, 1087 |
| BmiI | GGNNCC | 1 cut(s) | 1089 |
| BmrFI | CCNGG | 3 cut(s) | 129, 844, 1028 |
| BmrI | ACTGGG | 2 cut(s) | 365, 797 |
| BmsI | GCATC | 3 cut(s) | 271, 448, 646 |
| BmuI | ACTGGG | 2 cut(s) | 365, 797 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 88, 120 |
| Bpu10I | CCTNAGC | 2 cut(s) | 993, 1092 |
| BpuEI | CTTGAG | 3 cut(s) | 90, 218, 680 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1121 |
| BsaHI | GRCGYC | 1 cut(s) | 162 |
| BsaI | GGTCTC | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 3 cut(s) | 46, 874, 1176 |
| BsaWI | WCCGGW | 1 cut(s) | 770 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse1I | ACTGG | 3 cut(s) | 218, 360, 792 |
| Bse3DI | GCAATG | 1 cut(s) | 434 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1121 |
| BseBI | CCWGG | 3 cut(s) | 129, 844, 1028 |
| BseDI | CCNNGG | 3 cut(s) | 46, 874, 1176 |
| BseGI | GGATG | 5 cut(s) | 439, 899, 1036, 1074, 1186 |
| BseJI | GATNNNNATC | 1 cut(s) | 1121 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMI | GCAATG | 1 cut(s) | 434 |
| BseMII | CTCAG | 3 cut(s) | 914, 1083, 1286 |
| BseNI | ACTGG | 3 cut(s) | 218, 360, 792 |
| BseRI | GAGGAG | 4 cut(s) | 114, 387, 406, 766 |
| BseXI | GCAGC | 2 cut(s) | 223, 755 |
| BseYI | CCCAGC | 1 cut(s) | 284 |
| BsgI | GTGCAG | 1 cut(s) | 63 |
| BshFI | GGCC | 2 cut(s) | 382, 842 |
| BsiHKAI | GWGCWC | 1 cut(s) | 106 |
| BsiSI | CCGG | 1 cut(s) | 771 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 4 cut(s) | 418, 528, 693, 1245 |
| BsmBI | CGTCTC | 1 cut(s) | 1245 |
| BsmI | GAATGC | 1 cut(s) | 853 |
| BsnI | GGCC | 2 cut(s) | 382, 842 |
| Bso31I | GGTCTC | 1 cut(s) | 418 |
| Bsp1286I | GDGCHC | 1 cut(s) | 106 |
| Bsp143I | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| Bsp19I | CCATGG | 1 cut(s) | 1176 |
| BspACI | CCGC | 1 cut(s) | 1001 |
| BspANI | GGCC | 2 cut(s) | 382, 842 |
| BspCNI | CTCAG | 3 cut(s) | 915, 1084, 1285 |
| BspLI | GGNNCC | 1 cut(s) | 1089 |
| BspPI | GGATC | 2 cut(s) | 356, 1018 |
| BspTNI | GGTCTC | 1 cut(s) | 418 |
| BsrDI | GCAATG | 1 cut(s) | 434 |
| BsrI | ACTGG | 3 cut(s) | 218, 360, 792 |
| BssECI | CCNNGG | 3 cut(s) | 46, 874, 1176 |
| BssMI | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| BssNI | GRCGYC | 1 cut(s) | 162 |
| BssT1I | CCWWGG | 3 cut(s) | 46, 874, 1176 |
| Bst2UI | CCWGG | 3 cut(s) | 129, 844, 1028 |
| Bst4CI | ACNGT | 3 cut(s) | 264, 387, 1267 |
| Bst6I | CTCTTC | 2 cut(s) | 578, 855 |
| BstACI | GRCGYC | 1 cut(s) | 162 |
| BstC8I | GCNNGC | 3 cut(s) | 304, 468, 891 |
| BstDEI | CTNAG | 6 cut(s) | 500, 923, 993, 1092, 1171, 1272 |
| BstDSI | CCRYGG | 1 cut(s) | 1176 |
| BstEII | GGTNACC | 1 cut(s) | 182 |
| BstF5I | GGATG | 5 cut(s) | 439, 899, 1036, 1074, 1186 |
| BstKTI | GATC | 5 cut(s) | 6, 91, 364, 1026, 1125 |
| BstMAI | GTCTC | 4 cut(s) | 418, 528, 693, 1245 |
| BstMBI | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 662, 740, 848, 998 |
| BstNI | CCWGG | 3 cut(s) | 129, 844, 1028 |
| BstNSI | RCATGY | 2 cut(s) | 1013, 1046 |
| BstPI | GGTNACC | 1 cut(s) | 182 |
| BstSCI | CCNGG | 3 cut(s) | 127, 842, 1026 |
| BstSFI | CTRYAG | 2 cut(s) | 547, 738 |
| BstV1I | GCAGC | 2 cut(s) | 223, 755 |
| BstX2I | RGATCY | 1 cut(s) | 361 |
| BstYI | RGATCY | 1 cut(s) | 361 |
| BsuRI | GGCC | 2 cut(s) | 382, 842 |
| BtgI | CCRYGG | 1 cut(s) | 1176 |
| BtsCI | GGATG | 5 cut(s) | 439, 899, 1036, 1074, 1186 |
| BtsI | GCAGTG | 1 cut(s) | 900 |
| BtsIMutI | CAGTG | 4 cut(s) | 225, 353, 383, 900 |
| Cac8I | GCNNGC | 3 cut(s) | 304, 468, 891 |
| Cfr13I | GGNCC | 5 cut(s) | 215, 380, 773, 976, 1087 |
| CseI | GACGC | 1 cut(s) | 170 |
| CsiI | ACCWGGT | 1 cut(s) | 127 |
| Csp6I | GTAC | 6 cut(s) | 478, 667, 676, 940, 1099, 1240 |
| CviAII | CATG | 8 cut(s) | 344, 973, 1010, 1043, 1126, 1177, 1194, 1285 |
| CviQI | GTAC | 6 cut(s) | 478, 667, 676, 940, 1099, 1240 |
| DdeI | CTNAG | 6 cut(s) | 500, 923, 993, 1092, 1171, 1272 |
| DpnI | GATC | 5 cut(s) | 5, 90, 363, 1025, 1124 |
| DpnII | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1070 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1152 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1070 |
| EaeI | YGGCCR | 1 cut(s) | 840 |
| Eam1104I | CTCTTC | 2 cut(s) | 578, 855 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1152 |
| EarI | CTCTTC | 2 cut(s) | 578, 855 |
| EciI | GGCGGA | 1 cut(s) | 1016 |
| Ecl136II | GAGCTC | 1 cut(s) | 104 |
| Eco130I | CCWWGG | 3 cut(s) | 46, 874, 1176 |
| Eco24I | GRGCYC | 1 cut(s) | 106 |
| Eco31I | GGTCTC | 1 cut(s) | 418 |
| Eco32I | GATATC | 1 cut(s) | 511 |
| Eco47I | GGWCC | 4 cut(s) | 215, 773, 976, 1087 |
| Eco53kI | GAGCTC | 1 cut(s) | 104 |
| Eco57I | CTGAAG | 3 cut(s) | 392, 602, 1001 |
| Eco91I | GGTNACC | 1 cut(s) | 182 |
| EcoICRI | GAGCTC | 1 cut(s) | 104 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1087 |
| EcoO65I | GGTNACC | 1 cut(s) | 182 |
| EcoRII | CCWGG | 3 cut(s) | 127, 842, 1026 |
| EcoRV | GATATC | 1 cut(s) | 511 |
| EcoT14I | CCWWGG | 3 cut(s) | 46, 874, 1176 |
| EcoT22I | ATGCAT | 2 cut(s) | 639, 1011 |
| EcoT38I | GRGCYC | 1 cut(s) | 106 |
| ErhI | CCWWGG | 3 cut(s) | 46, 874, 1176 |
| Esp3I | CGTCTC | 1 cut(s) | 1245 |
| FaeI | CATG | 8 cut(s) | 347, 976, 1013, 1046, 1129, 1180, 1197, 1288 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1154, 1186 |
| FatI | CATG | 8 cut(s) | 343, 972, 1009, 1042, 1125, 1176, 1193, 1284 |
| Fnu4HI | GCNGC | 2 cut(s) | 237, 744 |
| FokI | GGATG | 5 cut(s) | 426, 886, 1043, 1081, 1193 |
| FriOI | GRGCYC | 1 cut(s) | 106 |
| Fsp4HI | GCNGC | 2 cut(s) | 237, 744 |
| FspBI | CTAG | 2 cut(s) | 824, 1107 |
| GluI | GCNGC | 2 cut(s) | 237, 744 |
| GsaI | CCCAGC | 1 cut(s) | 288 |
| HaeIII | GGCC | 2 cut(s) | 382, 842 |
| HapII | CCGG | 1 cut(s) | 771 |
| HgaI | GACGC | 1 cut(s) | 170 |
| Hin1I | GRCGYC | 1 cut(s) | 162 |
| Hin1II | CATG | 8 cut(s) | 347, 976, 1013, 1046, 1129, 1180, 1197, 1288 |
| HindIII | AAGCTT | 1 cut(s) | 404 |
| HinfI | GANTC | 6 cut(s) | 61, 110, 292, 1077, 1130, 1165 |
| HpaII | CCGG | 1 cut(s) | 771 |
| HphI | GGTGA | 1 cut(s) | 830 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 711, 821 |
| Hpy188I | TCNGA | 9 cut(s) | 8, 119, 402, 594, 924, 1020, 1038, 1076, 1275 |
| Hpy188III | TCNNGA | 8 cut(s) | 65, 86, 107, 149, 443, 659, 760, 959 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 711, 821 |
| Hpy99I | CGWCG | 2 cut(s) | 164, 809 |
| HpyAV | CCTTC | 2 cut(s) | 220, 1218 |
| HpyCH4III | ACNGT | 3 cut(s) | 264, 387, 1267 |
| HpyCH4IV | ACGT | 1 cut(s) | 38 |
| HpyCH4V | TGCA | 8 cut(s) | 80, 260, 434, 439, 466, 637, 851, 1009 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 662, 740, 848, 998 |
| HpyF3I | CTNAG | 6 cut(s) | 500, 923, 993, 1092, 1171, 1272 |
| HpySE526I | ACGT | 1 cut(s) | 38 |
| Hsp92I | GRCGYC | 1 cut(s) | 162 |
| Hsp92II | CATG | 8 cut(s) | 347, 976, 1013, 1046, 1129, 1180, 1197, 1288 |
| Kzo9I | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| LmnI | GCTCC | 5 cut(s) | 8, 101, 120, 634, 753 |
| Lsp1109I | GCAGC | 2 cut(s) | 223, 755 |
| LweI | GCATC | 3 cut(s) | 271, 448, 646 |
| MabI | ACCWGGT | 1 cut(s) | 127 |
| MaeI | CTAG | 2 cut(s) | 824, 1107 |
| MaeII | ACGT | 1 cut(s) | 38 |
| MaeIII | GTNAC | 5 cut(s) | 182, 622, 797, 914, 1196 |
| MalI | GATC | 5 cut(s) | 5, 90, 363, 1025, 1124 |
| MboI | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| MboII | GAAGA | 5 cut(s) | 443, 595, 823, 872, 1174 |
| MflI | RGATCY | 1 cut(s) | 361 |
| MhlI | GDGCHC | 1 cut(s) | 106 |
| MlsI | TGGCCA | 1 cut(s) | 842 |
| MluCI | AATT | 6 cut(s) | 136, 255, 271, 311, 793, 854 |
| MluNI | TGGCCA | 1 cut(s) | 842 |
| MlyI | GAGTC | 2 cut(s) | 70, 104 |
| MmeI | TCCRAC | 1 cut(s) | 1003 |
| Mox20I | TGGCCA | 1 cut(s) | 842 |
| Mph1103I | ATGCAT | 2 cut(s) | 639, 1011 |
| MscI | TGGCCA | 1 cut(s) | 842 |
| MseI | TTAA | 3 cut(s) | 135, 389, 885 |
| MslI | CAYNNNNRTG | 2 cut(s) | 444, 683 |
| Msp20I | TGGCCA | 1 cut(s) | 842 |
| MspI | CCGG | 1 cut(s) | 771 |
| MspR9I | CCNGG | 3 cut(s) | 129, 844, 1028 |
| Mva1269I | GAATGC | 1 cut(s) | 853 |
| MvaI | CCWGG | 3 cut(s) | 129, 844, 1028 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 662, 740, 848, 998 |
| NcoI | CCATGG | 1 cut(s) | 1176 |
| NdeII | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| NlaIII | CATG | 8 cut(s) | 347, 976, 1013, 1046, 1129, 1180, 1197, 1288 |
| NlaIV | GGNNCC | 1 cut(s) | 1089 |
| NmuCI | GTSAC | 2 cut(s) | 622, 1196 |
| NsiI | ATGCAT | 2 cut(s) | 639, 1011 |
| NspI | RCATGY | 2 cut(s) | 1013, 1046 |
| PctI | GAATGC | 1 cut(s) | 853 |
| PfeI | GAWTC | 4 cut(s) | 292, 1077, 1130, 1165 |
| PflFI | GACNNNGTC | 1 cut(s) | 949 |
| PfoI | TCCNGGA | 1 cut(s) | 1026 |
| PkrI | GCNGC | 2 cut(s) | 238, 745 |
| PleI | GAGTC | 2 cut(s) | 69, 104 |
| PpsI | GAGTC | 2 cut(s) | 69, 104 |
| PpuMI | RGGWCCY | 1 cut(s) | 1087 |
| Psp124BI | GAGCTC | 1 cut(s) | 106 |
| Psp5II | RGGWCCY | 1 cut(s) | 1087 |
| Psp6I | CCWGG | 3 cut(s) | 127, 842, 1026 |
| PspEI | GGTNACC | 1 cut(s) | 182 |
| PspFI | CCCAGC | 1 cut(s) | 284 |
| PspGI | CCWGG | 3 cut(s) | 127, 842, 1026 |
| PspN4I | GGNNCC | 1 cut(s) | 1089 |
| PspPI | GGNCC | 5 cut(s) | 215, 380, 773, 976, 1087 |
| PspPPI | RGGWCCY | 1 cut(s) | 1087 |
| PsuI | RGATCY | 1 cut(s) | 361 |
| PsyI | GACNNNGTC | 1 cut(s) | 949 |
| RsaI | GTAC | 6 cut(s) | 479, 668, 677, 941, 1100, 1241 |
| RsaNI | GTAC | 6 cut(s) | 478, 667, 676, 940, 1099, 1240 |
| RseI | CAYNNNNRTG | 2 cut(s) | 444, 683 |
| SacI | GAGCTC | 1 cut(s) | 106 |
| SaqAI | TTAA | 3 cut(s) | 135, 389, 885 |
| SatI | GCNGC | 2 cut(s) | 237, 744 |
| Sau3AI | GATC | 5 cut(s) | 3, 88, 361, 1023, 1122 |
| Sau96I | GGNCC | 5 cut(s) | 215, 380, 773, 976, 1087 |
| ScaI | AGTACT | 1 cut(s) | 941 |
| SchI | GAGTC | 2 cut(s) | 70, 104 |
| ScrFI | CCNGG | 3 cut(s) | 129, 844, 1028 |
| SduI | GDGCHC | 1 cut(s) | 106 |
| SexAI | ACCWGGT | 1 cut(s) | 127 |
| SfaNI | GCATC | 3 cut(s) | 271, 448, 646 |
| SfcI | CTRYAG | 2 cut(s) | 547, 738 |
| SinI | GGWCC | 4 cut(s) | 215, 773, 976, 1087 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 444, 683 |
| SmlI | CTYRAG | 3 cut(s) | 105, 197, 659 |
| SmoI | CTYRAG | 3 cut(s) | 105, 197, 659 |
| Sse9I | AATT | 6 cut(s) | 136, 255, 271, 311, 793, 854 |
| SsiI | CCGC | 1 cut(s) | 1001 |
| SspMI | CTAG | 2 cut(s) | 824, 1107 |
| SstI | GAGCTC | 1 cut(s) | 106 |
| StyD4I | CCNGG | 3 cut(s) | 127, 842, 1026 |
| StyI | CCWWGG | 3 cut(s) | 46, 874, 1176 |
| TaaI | ACNGT | 3 cut(s) | 264, 387, 1267 |
| TaiI | ACGT | 1 cut(s) | 41 |
| TaqI | TCGA | 5 cut(s) | 159, 167, 224, 1160, 1260 |
| TasI | AATT | 6 cut(s) | 136, 255, 271, 311, 793, 854 |
| TatI | WGTACW | 3 cut(s) | 675, 939, 1098 |
| TfiI | GAWTC | 4 cut(s) | 292, 1077, 1130, 1165 |
| Tru1I | TTAA | 3 cut(s) | 135, 389, 885 |
| Tru9I | TTAA | 3 cut(s) | 135, 389, 885 |
| TscAI | CASTG | 4 cut(s) | 225, 360, 390, 900 |
| TseFI | GTSAC | 2 cut(s) | 622, 1196 |
| TseI | GCWGC | 2 cut(s) | 236, 743 |
| Tsp45I | GTSAC | 2 cut(s) | 622, 1196 |
| TspDTI | ATGAA | 1 cut(s) | 256 |
| TspGWI | ACGGA | 1 cut(s) | 354 |
| TspRI | CASTG | 4 cut(s) | 225, 360, 390, 900 |
| Tth111I | GACNNNGTC | 1 cut(s) | 949 |
| VpaK11BI | GGWCC | 4 cut(s) | 215, 773, 976, 1087 |
| XapI | RAATTY | 2 cut(s) | 311, 854 |
| XceI | RCATGY | 2 cut(s) | 1013, 1046 |
| XspI | CTAG | 2 cut(s) | 824, 1107 |
| ZrmI | AGTACT | 1 cut(s) | 941 |
| Zsp2I | ATGCAT | 2 cut(s) | 639, 1011 |