AT5G14250

motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
4597868 .. 4600835
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G14250.1

Sequence Viewer

Length: 1290 bp
ATGATCGGAGCTGTGAACTCGGTGGAGGCTGTGATAACGTCAATCCAAGGTTTATCGGGGAGTCCAGAGGATTTATCTGCACTTCACGATCTTTTGAGAGGAGCTCAAGACTCGCTCCGAGCCGAACCAGGTGTTAATTTCTCTACTCTTGACCAGCTCGACGCCTCGAAGCACTCTCTCGGTTACCTGTATTTCCTTGAGGTTCTTACCTGTGGTCCAGTGTCGAAGGAGAAAGCTGCTTATGAGATACCGATAATTGCACGGTTCATCAATTCTTGTGATGCTGGGCAGATTCGTTTGGCGAGCTATAAATTTGTATCTCTTTGTAAGATATTGAAAGACCATGTTATAGCACTGGGAGATCCGTTGCGAGGAGTAGGGCCACTGTTAAACGCTGTTCAGAAGCTTCAGGTCTCCTCCAAGCGTTTGACTGCATTGCATCCAGATGTTCTTCAACTCTGTTTGCAGGCGAAATCGTACAAATCTGGTTTCTCCATTCTTAGTGATGATATCGTGGAGATTGACCAGCCAAGAGACTTTTTTCTCTATAGCTATTATGGGGGAATGATTTGTATTGGACTGAAGAGATTTCAGAAAGCATTAGAGCTTCTTTACAATGTTGTGACTGCTCCTATGCATCAAGTCAATGCCATAGCTCTTGAGGCGTACAAAAAGTACATATTGGTGTCTCTCATTCACAATGGGCAGTTTACTAACACTCTCCCCAAGTGTGCTTCTACAGCAGCACAGAGGAGCTTCAAGAACTATACCGGACCTTACATTGAACTGGGTAATTGTTACAACGACGGGAAGATTGGTGAACTAGAGGCATTGGTTGTGGCCAGGAATGCAGAATTTGAAGAGGATAAGAACCTTGGATTAGTTAAGCAAGCAGTGTCATCCCTTTACAAGCGTAACATTCTGAGATTGACACAGAAGTACTTGACCCTGTCGCTTCAAGATATAGCCAACATGGTCCAACTTGGTAATGCTAAGGAGGCGGAAATGCATGTGCTTCAGATGATCCAGGATGGTCAGATACATGCCCTTATCAACCAGAAAGACGGGATGGTCAGATTCTTGGAGGACCCTGAGCAGTACAAATCTAGTGAGATGATTGAGATCATGGATTCTGTTATACAAAGGACTATTGGTCTGTCGAAGAATCTCTTAGCCATGGATGAGAGCTTATCATGTGACCCTTTATACTTGGGAAAGGTAGGAAGGGAAAGACAAAGGTACGACTTTGGAGACGATTTCGATACTGTTCCTCAGAAGTTCTCCATGTAA

Protein Analysis

429

Amino Acids

47.74

Weight (kDa)

5.96

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COP9_hel_rpt PF22788 25 - 247 1.3e-60 COP9 signalosome complex subunit 3, N-terminal helical repeats
PCI PF01399 286 - 360 8.1e-15 PCI domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011229)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1070
AciI CCGC 1 cut(s) 1001
AclWI GGATC 2 cut(s) 356, 1018
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 2 cut(s) 311, 854
AcuI CTGAAG 3 cut(s) 392, 602, 1001
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 6 cut(s) 479, 668, 677, 941, 1100, 1241
AfiI CCNNNNNNNGG 1 cut(s) 371
AgsI TTSAA 6 cut(s) 337, 455, 760, 785, 860, 959
AhdI GACNNNNNGTC 1 cut(s) 1152
AjnI CCWGG 3 cut(s) 127, 842, 1026
Alw21I GWGCWC 1 cut(s) 106
Alw26I GTCTC 4 cut(s) 418, 528, 693, 1245
AlwI GGATC 2 cut(s) 356, 1018
AoxI GGCC 2 cut(s) 380, 840
ApeKI GCWGC 2 cut(s) 236, 743
ApoI RAATTY 2 cut(s) 311, 854
AspS9I GGNCC 5 cut(s) 215, 380, 773, 976, 1087
AsuHPI GGTGA 1 cut(s) 830
AvaII GGWCC 4 cut(s) 215, 773, 976, 1087
BalI TGGCCA 1 cut(s) 842
BanII GRGCYC 1 cut(s) 106
Bbv12I GWGCWC 1 cut(s) 106
BbvI GCAGC 2 cut(s) 223, 755
BccI CCATC 2 cut(s) 1025, 1063
BciT130I CCWGG 3 cut(s) 129, 844, 1028
BcoDI GTCTC 4 cut(s) 418, 528, 693, 1245
BfaI CTAG 2 cut(s) 824, 1107
BfmI CTRYAG 2 cut(s) 547, 738
BisI GCNGC 2 cut(s) 237, 744
BlsI GCNGC 2 cut(s) 238, 745
BmcAI AGTACT 1 cut(s) 941
Bme1390I CCNGG 3 cut(s) 129, 844, 1028
Bme18I GGWCC 4 cut(s) 215, 773, 976, 1087
BmeRI GACNNNNNGTC 1 cut(s) 1152
BmgT120I GGNCC 5 cut(s) 215, 380, 773, 976, 1087
BmiI GGNNCC 1 cut(s) 1089
BmrFI CCNGG 3 cut(s) 129, 844, 1028
BmrI ACTGGG 2 cut(s) 365, 797
BmsI GCATC 3 cut(s) 271, 448, 646
BmuI ACTGGG 2 cut(s) 365, 797
BplI GAGNNNNNCTC 2 cut(s) 88, 120
Bpu10I CCTNAGC 2 cut(s) 993, 1092
BpuEI CTTGAG 3 cut(s) 90, 218, 680
BsaBI GATNNNNATC 1 cut(s) 1121
BsaHI GRCGYC 1 cut(s) 162
BsaI GGTCTC 1 cut(s) 418
BsaJI CCNNGG 3 cut(s) 46, 874, 1176
BsaWI WCCGGW 1 cut(s) 770
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 3 cut(s) 218, 360, 792
Bse3DI GCAATG 1 cut(s) 434
Bse8I GATNNNNATC 1 cut(s) 1121
BseBI CCWGG 3 cut(s) 129, 844, 1028
BseDI CCNNGG 3 cut(s) 46, 874, 1176
BseGI GGATG 5 cut(s) 439, 899, 1036, 1074, 1186
BseJI GATNNNNATC 1 cut(s) 1121
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMI GCAATG 1 cut(s) 434
BseMII CTCAG 3 cut(s) 914, 1083, 1286
BseNI ACTGG 3 cut(s) 218, 360, 792
BseRI GAGGAG 4 cut(s) 114, 387, 406, 766
BseXI GCAGC 2 cut(s) 223, 755
BseYI CCCAGC 1 cut(s) 284
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 382, 842
BsiHKAI GWGCWC 1 cut(s) 106
BsiSI CCGG 1 cut(s) 771
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 4 cut(s) 418, 528, 693, 1245
BsmBI CGTCTC 1 cut(s) 1245
BsmI GAATGC 1 cut(s) 853
BsnI GGCC 2 cut(s) 382, 842
Bso31I GGTCTC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 106
Bsp143I GATC 5 cut(s) 3, 88, 361, 1023, 1122
Bsp19I CCATGG 1 cut(s) 1176
BspACI CCGC 1 cut(s) 1001
BspANI GGCC 2 cut(s) 382, 842
BspCNI CTCAG 3 cut(s) 915, 1084, 1285
BspLI GGNNCC 1 cut(s) 1089
BspPI GGATC 2 cut(s) 356, 1018
BspTNI GGTCTC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 434
BsrI ACTGG 3 cut(s) 218, 360, 792
BssECI CCNNGG 3 cut(s) 46, 874, 1176
BssMI GATC 5 cut(s) 3, 88, 361, 1023, 1122
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 3 cut(s) 46, 874, 1176
Bst2UI CCWGG 3 cut(s) 129, 844, 1028
Bst4CI ACNGT 3 cut(s) 264, 387, 1267
Bst6I CTCTTC 2 cut(s) 578, 855
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 304, 468, 891
BstDEI CTNAG 6 cut(s) 500, 923, 993, 1092, 1171, 1272
BstDSI CCRYGG 1 cut(s) 1176
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 5 cut(s) 439, 899, 1036, 1074, 1186
BstKTI GATC 5 cut(s) 6, 91, 364, 1026, 1125
BstMAI GTCTC 4 cut(s) 418, 528, 693, 1245
BstMBI GATC 5 cut(s) 3, 88, 361, 1023, 1122
BstMWI GCNNNNNNNGC 4 cut(s) 662, 740, 848, 998
BstNI CCWGG 3 cut(s) 129, 844, 1028
BstNSI RCATGY 2 cut(s) 1013, 1046
BstPI GGTNACC 1 cut(s) 182
BstSCI CCNGG 3 cut(s) 127, 842, 1026
BstSFI CTRYAG 2 cut(s) 547, 738
BstV1I GCAGC 2 cut(s) 223, 755
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 2 cut(s) 382, 842
BtgI CCRYGG 1 cut(s) 1176
BtsCI GGATG 5 cut(s) 439, 899, 1036, 1074, 1186
BtsI GCAGTG 1 cut(s) 900
BtsIMutI CAGTG 4 cut(s) 225, 353, 383, 900
Cac8I GCNNGC 3 cut(s) 304, 468, 891
Cfr13I GGNCC 5 cut(s) 215, 380, 773, 976, 1087
CseI GACGC 1 cut(s) 170
CsiI ACCWGGT 1 cut(s) 127
Csp6I GTAC 6 cut(s) 478, 667, 676, 940, 1099, 1240
CviAII CATG 8 cut(s) 344, 973, 1010, 1043, 1126, 1177, 1194, 1285
CviQI GTAC 6 cut(s) 478, 667, 676, 940, 1099, 1240
DdeI CTNAG 6 cut(s) 500, 923, 993, 1092, 1171, 1272
DpnI GATC 5 cut(s) 5, 90, 363, 1025, 1124
DpnII GATC 5 cut(s) 3, 88, 361, 1023, 1122
DrdI GACNNNNNNGTC 1 cut(s) 1070
DriI GACNNNNNGTC 1 cut(s) 1152
DseDI GACNNNNNNGTC 1 cut(s) 1070
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 2 cut(s) 578, 855
Eam1105I GACNNNNNGTC 1 cut(s) 1152
EarI CTCTTC 2 cut(s) 578, 855
EciI GGCGGA 1 cut(s) 1016
Ecl136II GAGCTC 1 cut(s) 104
Eco130I CCWWGG 3 cut(s) 46, 874, 1176
Eco24I GRGCYC 1 cut(s) 106
Eco31I GGTCTC 1 cut(s) 418
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 4 cut(s) 215, 773, 976, 1087
Eco53kI GAGCTC 1 cut(s) 104
Eco57I CTGAAG 3 cut(s) 392, 602, 1001
Eco91I GGTNACC 1 cut(s) 182
EcoICRI GAGCTC 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 1087
EcoO65I GGTNACC 1 cut(s) 182
EcoRII CCWGG 3 cut(s) 127, 842, 1026
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 3 cut(s) 46, 874, 1176
EcoT22I ATGCAT 2 cut(s) 639, 1011
EcoT38I GRGCYC 1 cut(s) 106
ErhI CCWWGG 3 cut(s) 46, 874, 1176
Esp3I CGTCTC 1 cut(s) 1245
FaeI CATG 8 cut(s) 347, 976, 1013, 1046, 1129, 1180, 1197, 1288
FalI AAGNNNNNCTT 2 cut(s) 1154, 1186
FatI CATG 8 cut(s) 343, 972, 1009, 1042, 1125, 1176, 1193, 1284
Fnu4HI GCNGC 2 cut(s) 237, 744
FokI GGATG 5 cut(s) 426, 886, 1043, 1081, 1193
FriOI GRGCYC 1 cut(s) 106
Fsp4HI GCNGC 2 cut(s) 237, 744
FspBI CTAG 2 cut(s) 824, 1107
GluI GCNGC 2 cut(s) 237, 744
GsaI CCCAGC 1 cut(s) 288
HaeIII GGCC 2 cut(s) 382, 842
HapII CCGG 1 cut(s) 771
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 8 cut(s) 347, 976, 1013, 1046, 1129, 1180, 1197, 1288
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 6 cut(s) 61, 110, 292, 1077, 1130, 1165
HpaII CCGG 1 cut(s) 771
HphI GGTGA 1 cut(s) 830
Hpy166II GTNNAC 3 cut(s) 16, 711, 821
Hpy188I TCNGA 9 cut(s) 8, 119, 402, 594, 924, 1020, 1038, 1076, 1275
Hpy188III TCNNGA 8 cut(s) 65, 86, 107, 149, 443, 659, 760, 959
Hpy8I GTNNAC 3 cut(s) 16, 711, 821
Hpy99I CGWCG 2 cut(s) 164, 809
HpyAV CCTTC 2 cut(s) 220, 1218
HpyCH4III ACNGT 3 cut(s) 264, 387, 1267
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 8 cut(s) 80, 260, 434, 439, 466, 637, 851, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 662, 740, 848, 998
HpyF3I CTNAG 6 cut(s) 500, 923, 993, 1092, 1171, 1272
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 8 cut(s) 347, 976, 1013, 1046, 1129, 1180, 1197, 1288
Kzo9I GATC 5 cut(s) 3, 88, 361, 1023, 1122
LmnI GCTCC 5 cut(s) 8, 101, 120, 634, 753
Lsp1109I GCAGC 2 cut(s) 223, 755
LweI GCATC 3 cut(s) 271, 448, 646
MabI ACCWGGT 1 cut(s) 127
MaeI CTAG 2 cut(s) 824, 1107
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 5 cut(s) 182, 622, 797, 914, 1196
MalI GATC 5 cut(s) 5, 90, 363, 1025, 1124
MboI GATC 5 cut(s) 3, 88, 361, 1023, 1122
MboII GAAGA 5 cut(s) 443, 595, 823, 872, 1174
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 106
MlsI TGGCCA 1 cut(s) 842
MluCI AATT 6 cut(s) 136, 255, 271, 311, 793, 854
MluNI TGGCCA 1 cut(s) 842
MlyI GAGTC 2 cut(s) 70, 104
MmeI TCCRAC 1 cut(s) 1003
Mox20I TGGCCA 1 cut(s) 842
Mph1103I ATGCAT 2 cut(s) 639, 1011
MscI TGGCCA 1 cut(s) 842
MseI TTAA 3 cut(s) 135, 389, 885
MslI CAYNNNNRTG 2 cut(s) 444, 683
Msp20I TGGCCA 1 cut(s) 842
MspI CCGG 1 cut(s) 771
MspR9I CCNGG 3 cut(s) 129, 844, 1028
Mva1269I GAATGC 1 cut(s) 853
MvaI CCWGG 3 cut(s) 129, 844, 1028
MwoI GCNNNNNNNGC 4 cut(s) 662, 740, 848, 998
NcoI CCATGG 1 cut(s) 1176
NdeII GATC 5 cut(s) 3, 88, 361, 1023, 1122
NlaIII CATG 8 cut(s) 347, 976, 1013, 1046, 1129, 1180, 1197, 1288
NlaIV GGNNCC 1 cut(s) 1089
NmuCI GTSAC 2 cut(s) 622, 1196
NsiI ATGCAT 2 cut(s) 639, 1011
NspI RCATGY 2 cut(s) 1013, 1046
PctI GAATGC 1 cut(s) 853
PfeI GAWTC 4 cut(s) 292, 1077, 1130, 1165
PflFI GACNNNGTC 1 cut(s) 949
PfoI TCCNGGA 1 cut(s) 1026
PkrI GCNGC 2 cut(s) 238, 745
PleI GAGTC 2 cut(s) 69, 104
PpsI GAGTC 2 cut(s) 69, 104
PpuMI RGGWCCY 1 cut(s) 1087
Psp124BI GAGCTC 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 3 cut(s) 127, 842, 1026
PspEI GGTNACC 1 cut(s) 182
PspFI CCCAGC 1 cut(s) 284
PspGI CCWGG 3 cut(s) 127, 842, 1026
PspN4I GGNNCC 1 cut(s) 1089
PspPI GGNCC 5 cut(s) 215, 380, 773, 976, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 949
RsaI GTAC 6 cut(s) 479, 668, 677, 941, 1100, 1241
RsaNI GTAC 6 cut(s) 478, 667, 676, 940, 1099, 1240
RseI CAYNNNNRTG 2 cut(s) 444, 683
SacI GAGCTC 1 cut(s) 106
SaqAI TTAA 3 cut(s) 135, 389, 885
SatI GCNGC 2 cut(s) 237, 744
Sau3AI GATC 5 cut(s) 3, 88, 361, 1023, 1122
Sau96I GGNCC 5 cut(s) 215, 380, 773, 976, 1087
ScaI AGTACT 1 cut(s) 941
SchI GAGTC 2 cut(s) 70, 104
ScrFI CCNGG 3 cut(s) 129, 844, 1028
SduI GDGCHC 1 cut(s) 106
SexAI ACCWGGT 1 cut(s) 127
SfaNI GCATC 3 cut(s) 271, 448, 646
SfcI CTRYAG 2 cut(s) 547, 738
SinI GGWCC 4 cut(s) 215, 773, 976, 1087
SmiMI CAYNNNNRTG 2 cut(s) 444, 683
SmlI CTYRAG 3 cut(s) 105, 197, 659
SmoI CTYRAG 3 cut(s) 105, 197, 659
Sse9I AATT 6 cut(s) 136, 255, 271, 311, 793, 854
SsiI CCGC 1 cut(s) 1001
SspMI CTAG 2 cut(s) 824, 1107
SstI GAGCTC 1 cut(s) 106
StyD4I CCNGG 3 cut(s) 127, 842, 1026
StyI CCWWGG 3 cut(s) 46, 874, 1176
TaaI ACNGT 3 cut(s) 264, 387, 1267
TaiI ACGT 1 cut(s) 41
TaqI TCGA 5 cut(s) 159, 167, 224, 1160, 1260
TasI AATT 6 cut(s) 136, 255, 271, 311, 793, 854
TatI WGTACW 3 cut(s) 675, 939, 1098
TfiI GAWTC 4 cut(s) 292, 1077, 1130, 1165
Tru1I TTAA 3 cut(s) 135, 389, 885
Tru9I TTAA 3 cut(s) 135, 389, 885
TscAI CASTG 4 cut(s) 225, 360, 390, 900
TseFI GTSAC 2 cut(s) 622, 1196
TseI GCWGC 2 cut(s) 236, 743
Tsp45I GTSAC 2 cut(s) 622, 1196
TspDTI ATGAA 1 cut(s) 256
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 4 cut(s) 225, 360, 390, 900
Tth111I GACNNNGTC 1 cut(s) 949
VpaK11BI GGWCC 4 cut(s) 215, 773, 976, 1087
XapI RAATTY 2 cut(s) 311, 854
XceI RCATGY 2 cut(s) 1013, 1046
XspI CTAG 2 cut(s) 824, 1107
ZrmI AGTACT 1 cut(s) 941
Zsp2I ATGCAT 2 cut(s) 639, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.