Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Reverse (-)

87612729 .. 87618863

Gene Structure 6135 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG660400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAAGCTCTGGTGGTGAACATCCAGGGGCTGTCGACGAATGCCGCAGACCTCTCGAACCTTCAAATCATTCTGAAGCAGGCGCATGAGTCGCTCCAAGCGGAGTCGATTCGGTTGCTTCCTCTTTTGGACCAGCTCGATCCCTCCCTGCATTCGCTTGGATACCTCTACATCCTGGAAGCATGCACTTCTGCTGCGTTGTCAAAGGAGCAAGCTAGTGCGGTGCTGTTGCCCACTGCCAGATTTATCAGTTCATGTGATAAGGAGCAAATTCAATTGGCACCTGAGAAATTCGTAAGTGTTTGCAGGAGGTTCAAAGATTTTGTTATGCAGCTTGAAGCCCCATTGAGAGGAGTGGCACCAATGTTGACAGCAATTCGGAAAATTCAGAGCTCCTCGGAACATTTGACTTCCTTGCATCCAGAGTTTCTTGTTCTCTGTTTGTTGTCAAAAAGCTATAAAGCTGGATTGTCAATTTTGGATGAAGACATTTTTGAGGTTGATCAGCCAAAAGATCTTTTTCTCTATTGCTATTACGGGGGCATGATATGTATAGGACAAAAGAGTTTTCGCAAAGCGTTGGAGCTTTTACACAATGTTGTAACAGCTCCAATGTCAGTCATTAATGCAATAGCTGTTGAAGCATACAAAAAGTATATATTGGTTTCACTAATTCACAATGGACAGTTCTCTACCAGTCTCCCTAAATACACCTCATCTGTAGCTCAGAGGAATCTGAAGAACTTTTGTCAGCCCTACATAGAATTGGCAACCAGCTATAGCACTGGTAAAATTGCTGAGTTTGAGACAGTGGCCCAGAAACACAGGGAGAAATTTGATAATGACAACAATCTTGGACTGGTGAAGCAGGCTATATCTTCCATGTATAAGCGCAACATTCAGAGACTGACTCAGACATACTTGACTCTCTCCCTCCAAGATATAGCCAACAGTGTTCAGTTAAACAGTGCTAAGGAAGCTGAAATGCATGTGCTACAAATGATCCAAGATGGTGAGATATTTGCAACAATTAACCAGAAGGATGGAATGGTTAGCTTTCTTGAGGATCCTGAACAGTATAAAACCTGTCAGATGATTGAACATATTGACTCATCAATACAAAGGATAATGGCGCTTTCGAGGAAGCTGACTACTATGAACGAGAACATCTCTTGTGATCCTATGTTCCTCGCAAAGGTTGGGAGAGAGCGGCAACGATTTGACTTTGATGATTTTGATCCTGTTCCACAGAGGTTTAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

421

Amino Acids

47.54

Weight (kDa)

6.03

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	18 - 241	6.7e-68	COP9 signalosome complex subunit 3, N-terminal helical repeats
PCI	PF01399	273 - 353	2.1e-16	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	280, 358
AccBSI	CCGCTC	1 cut(s)	1210
AccI	GTMKAC	1 cut(s)	35
AciI	CCGC	4 cut(s)	45, 101, 221, 1210
AclWI	GGATC	6 cut(s)	134, 997, 1061, 1074, 1172, 1232
AcsI	RAATTY	4 cut(s)	270, 290, 384, 833
AcuI	CTGAAG	2 cut(s)	95, 758
AfiI	CCNNNNNNNGG	2 cut(s)	350, 1195
AgsI	TTSAA	6 cut(s)	65, 275, 316, 338, 641, 1100
AjnI	CCWGG	2 cut(s)	24, 174
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	3 cut(s)	704, 800, 898
AlwI	GGATC	6 cut(s)	134, 997, 1061, 1074, 1172, 1232
AlwNI	CAGNNNCTG	2 cut(s)	31, 907
AoxI	GGCC	1 cut(s)	813
ApeKI	GCWGC	2 cut(s)	194, 331
ApoI	RAATTY	4 cut(s)	270, 290, 384, 833
AseI	ATTAAT	1 cut(s)	624
AspLEI	GCGC	3 cut(s)	85, 894, 1135
AspS9I	GGNCC	2 cut(s)	130, 814
AsuHPI	GGTGA	3 cut(s)	28, 874, 1025
AvaII	GGWCC	1 cut(s)	130
BamHI	GGATCC	1 cut(s)	1066
BanI	GGYRCC	2 cut(s)	280, 358
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	181, 343
BccI	CCATC	2 cut(s)	1004, 1037
BcgI	CGANNNNNNTGC	4 cut(s)	36, 70, 97, 131
BciT130I	CCWGG	2 cut(s)	26, 176
BciVI	GTATCC	1 cut(s)	155
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	3 cut(s)	704, 800, 898
BfaI	CTAG	1 cut(s)	216
BfmI	CTRYAG	2 cut(s)	720, 778
BfoI	RGCGCY	1 cut(s)	1136
BfuI	GTATCC	1 cut(s)	155
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	4 cut(s)	45, 195, 332, 1211
BlsI	GCNGC	4 cut(s)	46, 196, 333, 1212
Bme1390I	CCNGG	2 cut(s)	26, 176
Bme18I	GGWCC	1 cut(s)	130
BmgT120I	GGNCC	2 cut(s)	130, 814
BmiI	GGNNCC	3 cut(s)	282, 360, 1068
BmrFI	CCNGG	2 cut(s)	26, 176
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	4 cut(s)	895, 927, 1154, 1186
Bpu10I	CCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	1082
BsaBI	GATNNNNATC	1 cut(s)	1236
BsaJI	CCNNGG	2 cut(s)	25, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 1195
Bse1I	ACTGG	3 cut(s)	696, 790, 864
Bse8I	GATNNNNATC	1 cut(s)	1236
BseBI	CCWGG	2 cut(s)	26, 176
BseDI	CCNNGG	2 cut(s)	25, 396
BseGI	GGATG	5 cut(s)	21, 171, 418, 487, 1048
BseJI	GATNNNNATC	1 cut(s)	1236
BseLI	CCNNNNNNNGG	2 cut(s)	350, 1195
BseMII	CTCAG	4 cut(s)	276, 740, 789, 926
BseNI	ACTGG	3 cut(s)	696, 790, 864
BseRI	GAGGAG	2 cut(s)	366, 385
BseXI	GCAGC	2 cut(s)	181, 343
BshFI	GGCC	1 cut(s)	815
BshNI	GGYRCC	2 cut(s)	280, 358
BsiHKAI	GWGCWC	1 cut(s)	395
BslI	CCNNNNNNNGG	2 cut(s)	350, 1195
BsmAI	GTCTC	3 cut(s)	704, 800, 898
BsmI	GAATGC	2 cut(s)	46, 151
BsnI	GGCC	1 cut(s)	815
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
BspACI	CCGC	4 cut(s)	45, 101, 221, 1210
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	4 cut(s)	277, 739, 790, 925
BspLI	GGNNCC	3 cut(s)	282, 360, 1068
BspPI	GGATC	6 cut(s)	134, 997, 1061, 1074, 1172, 1232
BspT107I	GGYRCC	2 cut(s)	280, 358
BsrBI	CCGCTC	1 cut(s)	1210
BsrI	ACTGG	3 cut(s)	696, 790, 864
BssECI	CCNNGG	2 cut(s)	25, 396
BssMI	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
Bst2UI	CCWGG	2 cut(s)	26, 176
Bst4CI	ACNGT	5 cut(s)	687, 811, 953, 968, 1077
BstC8I	GCNNGC	4 cut(s)	81, 184, 213, 870
BstDEI	CTNAG	5 cut(s)	285, 726, 798, 912, 972
BstENI	CCTNNNNNAGG	1 cut(s)	1193
BstF5I	GGATG	5 cut(s)	21, 171, 418, 487, 1048
BstH2I	RGCGCY	1 cut(s)	1136
BstHHI	GCGC	3 cut(s)	85, 894, 1135
BstKTI	GATC	7 cut(s)	142, 505, 517, 1005, 1069, 1180, 1240
BstMAI	GTCTC	3 cut(s)	704, 800, 898
BstMBI	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 641, 977
BstNI	CCWGG	2 cut(s)	26, 176
BstNSI	RCATGY	2 cut(s)	186, 992
BstSCI	CCNGG	2 cut(s)	24, 174
BstSFI	CTRYAG	2 cut(s)	720, 778
BstV1I	GCAGC	2 cut(s)	181, 343
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	2 cut(s)	514, 1066
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	2 cut(s)	514, 1066
BsuI	GTATCC	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	815
BtsCI	GGATG	5 cut(s)	21, 171, 418, 487, 1048
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	5 cut(s)	234, 783, 816, 958, 973
Cac8I	GCNNGC	4 cut(s)	81, 184, 213, 870
CaiI	CAGNNNCTG	2 cut(s)	31, 907
CfoI	GCGC	3 cut(s)	85, 894, 1135
Cfr13I	GGNCC	2 cut(s)	130, 814
CviAII	CATG	6 cut(s)	86, 183, 255, 544, 883, 989
DdeI	CTNAG	5 cut(s)	285, 726, 798, 912, 972
DpnI	GATC	7 cut(s)	141, 504, 516, 1004, 1068, 1179, 1239
DpnII	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
Ecl136II	GAGCTC	1 cut(s)	393
Eco24I	GRGCYC	1 cut(s)	395
Eco47I	GGWCC	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	95, 758
EcoICRI	GAGCTC	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	1193
EcoRII	CCWGG	2 cut(s)	24, 174
EcoT22I	ATGCAT	1 cut(s)	990
EcoT38I	GRGCYC	1 cut(s)	395
FaeI	CATG	6 cut(s)	89, 186, 258, 547, 886, 992
FatI	CATG	6 cut(s)	85, 182, 254, 543, 882, 988
FbaI	TGATCA	1 cut(s)	502
FblI	GTMKAC	1 cut(s)	35
Fnu4HI	GCNGC	4 cut(s)	45, 195, 332, 1211
FokI	GGATG	5 cut(s)	8, 158, 405, 494, 1055
FriOI	GRGCYC	1 cut(s)	395
Fsp4HI	GCNGC	4 cut(s)	45, 195, 332, 1211
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	3 cut(s)	84, 893, 1134
GluI	GCNGC	4 cut(s)	45, 195, 332, 1211
HaeII	RGCGCY	1 cut(s)	1136
HaeIII	GGCC	1 cut(s)	815
HhaI	GCGC	3 cut(s)	85, 894, 1135
Hin1II	CATG	6 cut(s)	89, 186, 258, 547, 886, 992
Hin6I	GCGC	3 cut(s)	83, 892, 1133
HinP1I	GCGC	3 cut(s)	83, 892, 1133
HincII	GTYRAC	2 cut(s)	36, 369
HindII	GTYRAC	2 cut(s)	36, 369
HinfI	GANTC	7 cut(s)	89, 104, 109, 733, 910, 925, 1109
HphI	GGTGA	3 cut(s)	28, 874, 1025
Hpy166II	GTNNAC	3 cut(s)	19, 36, 369
Hpy188I	TCNGA	9 cut(s)	75, 381, 390, 400, 729, 738, 903, 915, 1092
Hpy188III	TCNNGA	4 cut(s)	55, 422, 1061, 1070
Hpy8I	GTNNAC	3 cut(s)	19, 36, 369
Hpy99I	CGWCG	1 cut(s)	40
HpyAV	CCTTC	2 cut(s)	71, 1033
HpyCH4III	ACNGT	5 cut(s)	687, 811, 953, 968, 1077
HpyCH4V	TGCA	8 cut(s)	151, 186, 306, 331, 418, 629, 988, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 641, 977
HpyF3I	CTNAG	5 cut(s)	285, 726, 798, 912, 972
Hsp92II	CATG	6 cut(s)	89, 186, 258, 547, 886, 992
HspAI	GCGC	3 cut(s)	83, 892, 1133
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
LmnI	GCTCC	6 cut(s)	99, 208, 265, 398, 583, 613
Lsp1109I	GCAGC	2 cut(s)	181, 343
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	1 cut(s)	216
MaeIII	GTNAC	1 cut(s)	601
MalI	GATC	7 cut(s)	141, 504, 516, 1004, 1068, 1179, 1239
MbiI	CCGCTC	1 cut(s)	1210
MboI	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
MboII	GAAGA	3 cut(s)	497, 751, 870
MfeI	CAATTG	1 cut(s)	275
MflI	RGATCY	2 cut(s)	514, 1066
MhlI	GDGCHC	1 cut(s)	395
MlyI	GAGTC	5 cut(s)	98, 113, 904, 919, 1103
MmeI	TCCRAC	1 cut(s)	561
Mph1103I	ATGCAT	1 cut(s)	990
MseI	TTAA	4 cut(s)	624, 962, 1032, 1257
MspR9I	CCNGG	2 cut(s)	26, 176
MunI	CAATTG	1 cut(s)	275
Mva1269I	GAATGC	2 cut(s)	46, 151
MvaI	CCWGG	2 cut(s)	26, 176
MwoI	GCNNNNNNNGC	3 cut(s)	91, 641, 977
NdeII	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
NlaIII	CATG	6 cut(s)	89, 186, 258, 547, 886, 992
NlaIV	GGNNCC	3 cut(s)	282, 360, 1068
NsiI	ATGCAT	1 cut(s)	990
NspI	RCATGY	2 cut(s)	186, 992
PaeI	GCATGC	1 cut(s)	186
PctI	GAATGC	2 cut(s)	46, 151
PfeI	GAWTC	2 cut(s)	109, 733
PfoI	TCCNGGA	1 cut(s)	174
PkrI	GCNGC	4 cut(s)	46, 196, 333, 1212
PleI	GAGTC	5 cut(s)	97, 112, 904, 919, 1103
PpsI	GAGTC	5 cut(s)	97, 112, 904, 919, 1103
PshBI	ATTAAT	1 cut(s)	624
Psp124BI	GAGCTC	1 cut(s)	395
Psp6I	CCWGG	2 cut(s)	24, 174
PspGI	CCWGG	2 cut(s)	24, 174
PspN4I	GGNNCC	3 cut(s)	282, 360, 1068
PspPI	GGNCC	2 cut(s)	130, 814
PstNI	CAGNNNCTG	2 cut(s)	31, 907
PsuI	RGATCY	2 cut(s)	514, 1066
SacI	GAGCTC	1 cut(s)	395
SalI	GTCGAC	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	624, 962, 1032, 1257
SatI	GCNGC	4 cut(s)	45, 195, 332, 1211
Sau3AI	GATC	7 cut(s)	139, 502, 514, 1002, 1066, 1177, 1237
Sau96I	GGNCC	2 cut(s)	130, 814
SchI	GAGTC	5 cut(s)	98, 113, 904, 919, 1103
ScrFI	CCNGG	2 cut(s)	26, 176
SduI	GDGCHC	1 cut(s)	395
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	2 cut(s)	720, 778
SinI	GGWCC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
SphI	GCATGC	1 cut(s)	186
SsiI	CCGC	4 cut(s)	45, 101, 221, 1210
SspMI	CTAG	1 cut(s)	216
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	2 cut(s)	24, 174
TaaI	ACNGT	5 cut(s)	687, 811, 953, 968, 1077
TaqI	TCGA	5 cut(s)	35, 56, 107, 138, 1139
TauI	GCSGC	2 cut(s)	47, 1213
TfiI	GAWTC	2 cut(s)	109, 733
Tru1I	TTAA	4 cut(s)	624, 962, 1032, 1257
Tru9I	TTAA	4 cut(s)	624, 962, 1032, 1257
TscAI	CASTG	5 cut(s)	241, 790, 816, 958, 973
TseI	GCWGC	2 cut(s)	194, 331
TspDTI	ATGAA	3 cut(s)	243, 498, 1172
TspRI	CASTG	5 cut(s)	241, 790, 816, 958, 973
VpaK11BI	GGWCC	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	624
XagI	CCTNNNNNAGG	1 cut(s)	1193
XapI	RAATTY	4 cut(s)	270, 290, 384, 833
XceI	RCATGY	2 cut(s)	186, 992
XmiI	GTMKAC	1 cut(s)	35
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	1 cut(s)	990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.