Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Reverse (-)

38908779 .. 38913645

Gene Structure 4867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52990.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGAAGTTCTCGTTGTGAACATCCAGGGGCTCTCGACGAACCCCGGAGACCTCCCCAACCTGCACAACATTCTGAAGCAAGCGCACGACTCGCTCCACGCCGAGTCGATTCGGCTGCTTCCTCTTCTCGACATGCTTGATCCCTCTCTGCACTCGCTCGGTTACCTCTACATCTTGGAAGCATGCACTTCATCTGCATTGTCAAAGGAGCAAGCTAGTGCGGTGGTGTTGCCCACGGCCAGATTTATGAATTCGTGCAGTAAGGAGCAAATTCAGTTGGCACCGGAGAAATTCATAAGTGTTTGCAAGAGGTTCAAAGACTATGTTATGCAGCTTGAAGCCCCTATGAGAGGAGTGGCACCAATGCTGGCAGCAATTCGGAAAATTCAGAGCTCCTCGGAACATCTGACTCCCTTGCATCCAGAATTTCTTGTACTCTGTTTGCTGTCAAAATGCTATAAAGCTGGATTATCCATTTTGGATGAAGACATCTTTGAGGTTGATCAGCCAAAAGATCTTCTTCTGTATTGCTATTACGGGGGGATGATATGTATTGGAGAAAAGCGTTTTCGAAAAGCATTGGAGCTTTTGCACAATGTTGTAACAGCTCCAATGTCTGTCATTACTGCAATAGCTGTTGAAGCATACAAAAAGTATATACTGGTTTCACTCATTCACAATGGACAGTTCTCTACCAGTCTCCCTAAATACACCTCATCTGTAGCTCAGAGGAATCTGAAGAACATTTGTCAGCCCTACATAGAATTGGCAAATAGCTATACGACGGGTAAGATTGCTGATTTTGAGACAGTTGCCCAGAAATACCAGGAGAAGTTTGATAATGACAACAATCTTGGACTGGTGAAGCAGGCTATTTCTTCCATGTACAAGCGCAACATTCAGAGACTTACACAGACATATTTAACCCTCTCCCTCCAAGATATAGCCAACAGTGTTCAATTAAACAGTGCTAAGGAAGCTGAAATGCAAGTGCTACAAATGATTCAAGACGGTGAGATATTTGCAACAATTAACCAGAAGGATGGAATGGTTAGCTTTCTTGAGGACCCTGAACAGTATAAATCTTGTGGGATGATTGAACGTATTGACTCATCAATACAAAGGATAATGGCGCTTTCGAGGAAGCTGACTACTATGAATGAGAACATCTCTTGTGATCCTATGTACCTAGCAAAGGTTGGGAGAGAACGGCAGCGGTTTGACTTTGATGATTATGATCCTGTTCCTCAGAGGTTTAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

422

Amino Acids

47.59

Weight (kDa)

6.11

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	17 - 241	1.5e-69	COP9 signalosome complex subunit 3, N-terminal helical repeats
PCI	PF01399	273 - 353	8.7e-16	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	69
AccB1I	GGYRCC	2 cut(s)	280, 358
AciI	CCGC	2 cut(s)	221, 1216
AclWI	GGATC	3 cut(s)	134, 1172, 1232
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	5 cut(s)	250, 270, 290, 384, 425
AcuI	CTGAAG	2 cut(s)	95, 758
AfaI	GTAC	3 cut(s)	435, 887, 1187
AfiI	CCNNNNNNNGG	2 cut(s)	350, 1195
AgsI	TTSAA	6 cut(s)	316, 338, 641, 959, 1007, 1100
AjnI	CCWGG	2 cut(s)	24, 825
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	4 cut(s)	42, 704, 800, 898
AlwI	GGATC	3 cut(s)	134, 1172, 1232
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	4 cut(s)	115, 331, 371, 1213
ApoI	RAATTY	5 cut(s)	250, 270, 290, 384, 425
AspLEI	GCGC	3 cut(s)	85, 894, 1135
AspS9I	GGNCC	1 cut(s)	1066
AsuC2I	CCSGG	1 cut(s)	45
AsuHPI	GGTGA	2 cut(s)	874, 1025
AsuII	TTCGAA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	1066
BanI	GGYRCC	2 cut(s)	280, 358
BanII	GRGCYC	2 cut(s)	33, 395
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	1 cut(s)	395
BbvI	GCAGC	4 cut(s)	102, 343, 383, 1225
BccI	CCATC	1 cut(s)	1037
BceAI	ACGGC	2 cut(s)	252, 1226
BcgI	CGANNNNNNTGC	2 cut(s)	97, 131
BciT130I	CCWGG	2 cut(s)	26, 827
BclI	TGATCA	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	45
BcoDI	GTCTC	4 cut(s)	42, 704, 800, 898
BfaI	CTAG	2 cut(s)	216, 1190
BfmI	CTRYAG	1 cut(s)	720
BfoI	RGCGCY	1 cut(s)	1136
BfuAI	ACCTGC	1 cut(s)	69
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	4 cut(s)	116, 332, 372, 1214
BlsI	GCNGC	4 cut(s)	117, 333, 373, 1215
Bme1390I	CCNGG	3 cut(s)	26, 45, 827
Bme18I	GGWCC	1 cut(s)	1066
BmgT120I	GGNCC	1 cut(s)	1066
BmiI	GGNNCC	3 cut(s)	282, 360, 1068
BmrFI	CCNGG	3 cut(s)	26, 45, 827
BmsI	GCATC	1 cut(s)	427
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	2 cut(s)	1154, 1186
Bpu10I	CCTNAGC	1 cut(s)	972
Bpu14I	TTCGAA	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	1082
BpuMI	CCSGG	1 cut(s)	45
BsaBI	GATNNNNATC	1 cut(s)	1236
BsaI	GGTCTC	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	25, 43, 234, 396
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 1195
Bse1I	ACTGG	3 cut(s)	666, 696, 864
Bse8I	GATNNNNATC	1 cut(s)	1236
BseBI	CCWGG	2 cut(s)	26, 827
BseDI	CCNNGG	4 cut(s)	25, 43, 234, 396
BseGI	GGATG	6 cut(s)	21, 418, 487, 549, 1048, 1098
BseJI	GATNNNNATC	1 cut(s)	1236
BseLI	CCNNNNNNNGG	2 cut(s)	350, 1195
BseMII	CTCAG	2 cut(s)	740, 1262
BseNI	ACTGG	3 cut(s)	666, 696, 864
BseRI	GAGGAG	2 cut(s)	366, 385
BseXI	GCAGC	4 cut(s)	102, 343, 383, 1225
BsgI	GTGCAG	3 cut(s)	47, 134, 277
BshFI	GGCC	1 cut(s)	239
BshNI	GGYRCC	2 cut(s)	280, 358
BsiHKAI	GWGCWC	1 cut(s)	395
BsiSI	CCGG	2 cut(s)	45, 284
BslI	CCNNNNNNNGG	2 cut(s)	350, 1195
BsmAI	GTCTC	4 cut(s)	42, 704, 800, 898
BsnI	GGCC	1 cut(s)	239
Bso31I	GGTCTC	1 cut(s)	42
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	2 cut(s)	33, 395
Bsp1407I	TGTACA	1 cut(s)	885
Bsp143I	GATC	5 cut(s)	139, 502, 514, 1177, 1237
BspACI	CCGC	2 cut(s)	221, 1216
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	739, 1261
BspLI	GGNNCC	3 cut(s)	282, 360, 1068
BspMI	ACCTGC	1 cut(s)	69
BspPI	GGATC	3 cut(s)	134, 1172, 1232
BspT104I	TTCGAA	1 cut(s)	571
BspT107I	GGYRCC	2 cut(s)	280, 358
BspTNI	GGTCTC	1 cut(s)	42
BsrGI	TGTACA	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	666, 696, 864
BssECI	CCNNGG	4 cut(s)	25, 43, 234, 396
BssMI	GATC	5 cut(s)	139, 502, 514, 1177, 1237
Bst2UI	CCWGG	2 cut(s)	26, 827
Bst4CI	ACNGT	6 cut(s)	687, 811, 953, 968, 1013, 1077
Bst6I	CTCTTC	1 cut(s)	129
BstAUI	TGTACA	1 cut(s)	885
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	5 cut(s)	81, 184, 213, 369, 870
BstDEI	CTNAG	3 cut(s)	726, 972, 1248
BstDSI	CCRYGG	1 cut(s)	234
BstEII	GGTNACC	1 cut(s)	161
BstENI	CCTNNNNNAGG	2 cut(s)	348, 1193
BstF5I	GGATG	6 cut(s)	21, 418, 487, 549, 1048, 1098
BstH2I	RGCGCY	1 cut(s)	1136
BstHHI	GCGC	3 cut(s)	85, 894, 1135
BstKTI	GATC	5 cut(s)	142, 505, 517, 1180, 1240
BstMAI	GTCTC	4 cut(s)	42, 704, 800, 898
BstMBI	GATC	5 cut(s)	139, 502, 514, 1177, 1237
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 641, 977
BstNI	CCWGG	2 cut(s)	26, 827
BstNSI	RCATGY	2 cut(s)	136, 186
BstPI	GGTNACC	1 cut(s)	161
BstSCI	CCNGG	3 cut(s)	24, 43, 825
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	102, 343, 383, 1225
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	514
BstXI	CCANNNNNNTGG	1 cut(s)	1043
BstYI	RGATCY	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	6 cut(s)	21, 418, 487, 549, 1048, 1098
BtsIMutI	CAGTG	2 cut(s)	958, 973
BveI	ACCTGC	1 cut(s)	69
Cac8I	GCNNGC	5 cut(s)	81, 184, 213, 369, 870
CfoI	GCGC	3 cut(s)	85, 894, 1135
Cfr13I	GGNCC	1 cut(s)	1066
Csp6I	GTAC	3 cut(s)	434, 886, 1186
CviAII	CATG	3 cut(s)	133, 183, 883
CviQI	GTAC	3 cut(s)	434, 886, 1186
DdeI	CTNAG	3 cut(s)	726, 972, 1248
DpnI	GATC	5 cut(s)	141, 504, 516, 1179, 1239
DpnII	GATC	5 cut(s)	139, 502, 514, 1177, 1237
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
Ecl136II	GAGCTC	1 cut(s)	393
Eco24I	GRGCYC	2 cut(s)	33, 395
Eco31I	GGTCTC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	1066
Eco53kI	GAGCTC	1 cut(s)	393
Eco57I	CTGAAG	2 cut(s)	95, 758
Eco91I	GGTNACC	1 cut(s)	161
EcoICRI	GAGCTC	1 cut(s)	393
EcoNI	CCTNNNNNAGG	2 cut(s)	348, 1193
EcoO109I	RGGNCCY	1 cut(s)	1066
EcoO65I	GGTNACC	1 cut(s)	161
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	24, 825
EcoT38I	GRGCYC	2 cut(s)	33, 395
FaeI	CATG	3 cut(s)	136, 186, 886
FalI	AAGNNNNNCTT	2 cut(s)	504, 536
FatI	CATG	3 cut(s)	132, 182, 882
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	4 cut(s)	116, 332, 372, 1214
FokI	GGATG	6 cut(s)	8, 405, 494, 556, 1055, 1105
FriOI	GRGCYC	2 cut(s)	33, 395
Fsp4HI	GCNGC	4 cut(s)	116, 332, 372, 1214
FspBI	CTAG	2 cut(s)	216, 1190
GlaI	GCGC	3 cut(s)	84, 893, 1134
GluI	GCNGC	4 cut(s)	116, 332, 372, 1214
HaeII	RGCGCY	1 cut(s)	1136
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	2 cut(s)	45, 284
HhaI	GCGC	3 cut(s)	85, 894, 1135
Hin1II	CATG	3 cut(s)	136, 186, 886
Hin6I	GCGC	3 cut(s)	83, 892, 1133
HinP1I	GCGC	3 cut(s)	83, 892, 1133
HinfI	GANTC	7 cut(s)	89, 104, 109, 409, 733, 1003, 1109
HpaII	CCGG	2 cut(s)	45, 284
HphI	GGTGA	2 cut(s)	874, 1025
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	9 cut(s)	75, 381, 390, 400, 408, 729, 738, 903, 1251
Hpy188III	TCNNGA	5 cut(s)	34, 128, 422, 1007, 1061
Hpy8I	GTNNAC	1 cut(s)	19
Hpy99I	CGWCG	2 cut(s)	40, 787
HpyAV	CCTTC	1 cut(s)	1033
HpyCH4III	ACNGT	6 cut(s)	687, 811, 953, 968, 1013, 1077
HpyCH4IV	ACGT	1 cut(s)	1102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 641, 977
HpyF3I	CTNAG	3 cut(s)	726, 972, 1248
HpySE526I	ACGT	1 cut(s)	1102
Hsp92II	CATG	3 cut(s)	136, 186, 886
HspAI	GCGC	3 cut(s)	83, 892, 1133
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	5 cut(s)	139, 502, 514, 1177, 1237
LmnI	GCTCC	6 cut(s)	99, 208, 265, 398, 583, 613
Lsp1109I	GCAGC	4 cut(s)	102, 343, 383, 1225
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	216, 1190
MaeII	ACGT	1 cut(s)	1102
MaeIII	GTNAC	2 cut(s)	161, 601
MalI	GATC	5 cut(s)	141, 504, 516, 1179, 1239
MboI	GATC	5 cut(s)	139, 502, 514, 1177, 1237
MboII	GAAGA	6 cut(s)	116, 497, 509, 512, 751, 870
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	2 cut(s)	33, 395
MluCI	AATT	9 cut(s)	250, 270, 290, 375, 384, 425, 764, 959, 1029
MlyI	GAGTC	4 cut(s)	83, 113, 403, 1103
MseI	TTAA	4 cut(s)	923, 962, 1032, 1257
MspA1I	CMGCKG	1 cut(s)	1216
MspI	CCGG	2 cut(s)	45, 284
MspR9I	CCNGG	3 cut(s)	26, 45, 827
MvaI	CCWGG	2 cut(s)	26, 827
MwoI	GCNNNNNNNGC	3 cut(s)	91, 641, 977
NciI	CCSGG	1 cut(s)	45
NdeII	GATC	5 cut(s)	139, 502, 514, 1177, 1237
NlaIII	CATG	3 cut(s)	136, 186, 886
NlaIV	GGNNCC	3 cut(s)	282, 360, 1068
NmeAIII	GCCGAG	1 cut(s)	127
NspI	RCATGY	2 cut(s)	136, 186
NspV	TTCGAA	1 cut(s)	571
PaeI	GCATGC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	109, 733, 1003
PkrI	GCNGC	4 cut(s)	117, 333, 373, 1215
PleI	GAGTC	4 cut(s)	83, 112, 403, 1103
PpsI	GAGTC	4 cut(s)	83, 112, 403, 1103
PpuMI	RGGWCCY	1 cut(s)	1066
Psp124BI	GAGCTC	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	1066
Psp6I	CCWGG	2 cut(s)	24, 825
PspEI	GGTNACC	1 cut(s)	161
PspGI	CCWGG	2 cut(s)	24, 825
PspN4I	GGNNCC	3 cut(s)	282, 360, 1068
PspPI	GGNCC	1 cut(s)	1066
PspPPI	RGGWCCY	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	514
RsaI	GTAC	3 cut(s)	435, 887, 1187
RsaNI	GTAC	3 cut(s)	434, 886, 1186
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	923, 962, 1032, 1257
SatI	GCNGC	4 cut(s)	116, 332, 372, 1214
Sau3AI	GATC	5 cut(s)	139, 502, 514, 1177, 1237
Sau96I	GGNCC	1 cut(s)	1066
SchI	GAGTC	4 cut(s)	83, 113, 403, 1103
ScrFI	CCNGG	3 cut(s)	26, 45, 827
SduI	GDGCHC	2 cut(s)	33, 395
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	1 cut(s)	1066
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
SphI	GCATGC	1 cut(s)	186
Sse9I	AATT	9 cut(s)	250, 270, 290, 375, 384, 425, 764, 959, 1029
SsiI	CCGC	2 cut(s)	221, 1216
SspMI	CTAG	2 cut(s)	216, 1190
SstI	GAGCTC	1 cut(s)	395
StyD4I	CCNGG	3 cut(s)	24, 43, 825
TaaI	ACNGT	6 cut(s)	687, 811, 953, 968, 1013, 1077
TaiI	ACGT	1 cut(s)	1105
TaqI	TCGA	5 cut(s)	35, 107, 129, 571, 1139
TasI	AATT	9 cut(s)	250, 270, 290, 375, 384, 425, 764, 959, 1029
TatI	WGTACW	2 cut(s)	433, 885
TfiI	GAWTC	3 cut(s)	109, 733, 1003
Tru1I	TTAA	4 cut(s)	923, 962, 1032, 1257
Tru9I	TTAA	4 cut(s)	923, 962, 1032, 1257
TscAI	CASTG	2 cut(s)	958, 973
TseI	GCWGC	4 cut(s)	115, 331, 371, 1213
TspDTI	ATGAA	5 cut(s)	180, 263, 283, 498, 1172
TspRI	CASTG	2 cut(s)	958, 973
VpaK11BI	GGWCC	1 cut(s)	1066
XagI	CCTNNNNNAGG	2 cut(s)	348, 1193
XapI	RAATTY	5 cut(s)	250, 270, 290, 384, 425
XceI	RCATGY	2 cut(s)	136, 186
XspI	CTAG	2 cut(s)	216, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.