Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Reverse (-)

26635374 .. 26639539

Gene Structure 4166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G302400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGACGCTTTACAAGCTCTGGTGGCGAATATCCAAGGGCTATCGAGCGCTGGGGACATCTCGCACCTTCATGTTGTTCTGAAGCAGGCGCCGGACTCGCTCTACGCCGAGTCGACTCGATTACTTCCTGTTCTGGACCAGCTTGACCCCTCCAAGCACTCTCTCGGATACCTCTACATCCTAGAGGCATGCTCTTCTGGTTCGATTTCAAAGGAGCAAGGAAGTGCGTTGGTTTTGCCTATTGCCACATTTATTAATTCCTGTGATACGGAGCAGATTCGTTTGGCACCTGATAAATTCCTATCTGTTTGTAAGAGGTTCAAAGATCAAGTTACGGTTCTTGAAGAACCACTGCGGGGAGTCGCACCAATGTTGACAGCAATTCGGAAAATTCAGACCTCCTCAGAACATTTGACTTCCTTGCATCCAGAGTTTCTTCTTCTTTGTTTGTTGTCAAAATGCTATAAAGCTGGATTGTCCATTTTAGGTGATGACATTTTTGAGGTTGATCAGCCAAGGGATCTTTTTCTCTATTGCTATTACGGGGGGATGATATGCATCGGACAAAAGCGTTTTCAGAAAGCATTGGAGCTTCTACACAATGTTGTAACAGCTCCAATGACTGTTATTAATGCAATAGCTGTTGAAGCATACAAAAAGTACATATTGGCTTCACTCATTCACCATGGGCAGTTCTCTACCAGTCTCCCTAAATACACCTCATCAGTAGCTCAGAGGAATCTGAAGAACTTTTGTCAGCCCTACATTGAATTGGCAAATAGCTATAGCACTGGAAAAATTGAAGAATTGGAGACATGTGTGCAGAAGTACAAGGAAAAGTTTGAAAACGACAACAATCTTGGACTGGTGAAGCAGGTTATATCTTCCATGTATAAGCGAAACATTCAGAGATTGACTCAGACATACTTGACTCTCTCCCTCCAAGATATCGCCAACAGTGTTCAACTAAACAGCGCCAAGGAGGCAGAAATGCATGTGCTACAAATGATCCAAGATGGTGAGATATTTGCCACAATTAACCAGAAAGATGGAATGGTTAGATTTCTTGAGGATCCTGAACAGTATAAAACCTGTCAGATGATTGAACATATTGACTCATCAATACAGAGGATAATGGCACTGTCAAGGAAGCTGACTGCTATGGATGAAAACATCTCGTCTGATGCTTTGTTCTTAGGAAAGGTTGGAAGAGAACGACAGAGATTTGACTTCGATGATTTCGACACTGTTCCTCAGAAATTTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

424

Amino Acids

47.66

Weight (kDa)

5.97

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
AccB1I	GGYRCC	2 cut(s)	88, 286
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	1 cut(s)	355
AclWI	GGATC	4 cut(s)	528, 1003, 1067, 1080
AcsI	RAATTY	3 cut(s)	296, 390, 1259
AcuI	CTGAAG	2 cut(s)	101, 764
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	2 cut(s)	662, 830
AfeI	AGCGCT	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	356
AflIII	ACRYGT	1 cut(s)	815
AgsI	TTSAA	9 cut(s)	210, 322, 344, 647, 770, 803, 845, 965, 1106
AluBI	AGCT	9 cut(s)	17, 142, 470, 592, 614, 641, 731, 783, 1153
AluI	AGCT	9 cut(s)	17, 142, 470, 592, 614, 641, 731, 783, 1153
Alw26I	GTCTC	2 cut(s)	710, 806
AlwI	GGATC	4 cut(s)	528, 1003, 1067, 1080
Aor51HI	AGCGCT	1 cut(s)	49
ApoI	RAATTY	3 cut(s)	296, 390, 1259
AseI	ATTAAT	2 cut(s)	255, 630
AspLEI	GCGC	3 cut(s)	50, 91, 977
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	4 cut(s)	500, 674, 880, 1031
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	1072
BanI	GGYRCC	2 cut(s)	88, 286
BccI	CCATC	2 cut(s)	1010, 1043
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	710, 806
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	784
BfoI	RGCGCY	3 cut(s)	51, 92, 978
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	161
BglI	GCCNNNNNGGC	1 cut(s)	983
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	3 cut(s)	90, 288, 1074
BmsI	GCATC	3 cut(s)	433, 567, 1174
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 901, 933
BpuEI	CTTGAG	1 cut(s)	1088
BsaBI	GATNNNNATC	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	4 cut(s)	34, 515, 685, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	3 cut(s)	702, 796, 870
Bse8I	GATNNNNATC	1 cut(s)	557
BseDI	CCNNGG	4 cut(s)	34, 515, 685, 978
BseGI	GGATG	4 cut(s)	177, 424, 555, 1171
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMII	CTCAG	4 cut(s)	417, 746, 932, 1268
BseNI	ACTGG	3 cut(s)	702, 796, 870
BseRI	GAGGAG	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	50
BsgI	GTGCAG	1 cut(s)	842
BshNI	GGYRCC	2 cut(s)	88, 286
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	710, 806
BsmFI	GGGAC	1 cut(s)	68
Bsp143I	GATC	5 cut(s)	325, 508, 520, 1008, 1072
Bsp19I	CCATGG	1 cut(s)	685
BspACI	CCGC	1 cut(s)	355
BspCNI	CTCAG	4 cut(s)	416, 745, 931, 1267
BspLI	GGNNCC	3 cut(s)	90, 288, 1074
BspMI	ACCTGC	1 cut(s)	865
BspPI	GGATC	4 cut(s)	528, 1003, 1067, 1080
BspQI	GCTCTTC	1 cut(s)	199
BspT107I	GGYRCC	2 cut(s)	88, 286
BsrI	ACTGG	3 cut(s)	702, 796, 870
BssECI	CCNNGG	4 cut(s)	34, 515, 685, 978
BssMI	GATC	5 cut(s)	325, 508, 520, 1008, 1072
BssNI	GRCGYC	1 cut(s)	89
BssT1I	CCWWGG	4 cut(s)	34, 515, 685, 978
Bst4CI	ACNGT	6 cut(s)	337, 625, 959, 1083, 1143, 1249
Bst6I	CTCTTC	2 cut(s)	199, 1204
BstACI	GRCGYC	1 cut(s)	89
BstC8I	GCNNGC	2 cut(s)	87, 190
BstDEI	CTNAG	5 cut(s)	403, 732, 918, 1195, 1254
BstDSI	CCRYGG	1 cut(s)	685
BstF5I	GGATG	4 cut(s)	177, 424, 555, 1171
BstH2I	RGCGCY	3 cut(s)	51, 92, 978
BstHHI	GCGC	3 cut(s)	50, 91, 977
BstKTI	GATC	5 cut(s)	328, 511, 523, 1011, 1075
BstMAI	GTCTC	2 cut(s)	710, 806
BstMBI	GATC	5 cut(s)	325, 508, 520, 1008, 1072
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 23, 97, 647, 983
BstNSI	RCATGY	3 cut(s)	192, 819, 998
BstSFI	CTRYAG	1 cut(s)	784
BstX2I	RGATCY	2 cut(s)	520, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	2 cut(s)	520, 1072
BsuI	GTATCC	1 cut(s)	161
BtgI	CCRYGG	1 cut(s)	685
BtsCI	GGATG	4 cut(s)	177, 424, 555, 1171
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	5 cut(s)	350, 789, 964, 1139, 1245
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	2 cut(s)	87, 190
CfoI	GCGC	3 cut(s)	50, 91, 977
Cfr13I	GGNCC	1 cut(s)	136
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	661, 829
CviAII	CATG	6 cut(s)	71, 189, 686, 816, 889, 995
CviQI	GTAC	2 cut(s)	661, 829
DdeI	CTNAG	5 cut(s)	403, 732, 918, 1195, 1254
DinI	GGCGCC	1 cut(s)	90
DpnI	GATC	5 cut(s)	327, 510, 522, 1010, 1074
DpnII	GATC	5 cut(s)	325, 508, 520, 1008, 1072
Eam1104I	CTCTTC	2 cut(s)	199, 1204
EarI	CTCTTC	2 cut(s)	199, 1204
Eco130I	CCWWGG	4 cut(s)	34, 515, 685, 978
Eco32I	GATATC	1 cut(s)	949
Eco47I	GGWCC	1 cut(s)	136
Eco47III	AGCGCT	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	101, 764
EcoRV	GATATC	1 cut(s)	949
EcoT14I	CCWWGG	4 cut(s)	34, 515, 685, 978
EcoT22I	ATGCAT	2 cut(s)	560, 996
EgeI	GGCGCC	1 cut(s)	90
EheI	GGCGCC	1 cut(s)	90
ErhI	CCWWGG	4 cut(s)	34, 515, 685, 978
FaeI	CATG	6 cut(s)	74, 192, 689, 819, 892, 998
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	6 cut(s)	70, 188, 685, 815, 888, 994
FauI	CCCGC	1 cut(s)	348
FauNDI	CATATG	1 cut(s)	1268
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	113
FokI	GGATG	4 cut(s)	164, 411, 562, 1178
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	3 cut(s)	49, 90, 976
GsaI	CCCAGC	1 cut(s)	54
HaeII	RGCGCY	3 cut(s)	51, 92, 978
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	14
HhaI	GCGC	3 cut(s)	50, 91, 977
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	74, 192, 689, 819, 892, 998
Hin6I	GCGC	3 cut(s)	48, 89, 975
HinP1I	GCGC	3 cut(s)	48, 89, 975
HincII	GTYRAC	2 cut(s)	114, 375
HindII	GTYRAC	2 cut(s)	114, 375
HinfI	GANTC	9 cut(s)	95, 110, 115, 277, 360, 739, 916, 931, 1115
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	4 cut(s)	500, 674, 880, 1031
Hpy166II	GTNNAC	2 cut(s)	114, 375
Hpy188III	TCNNGA	5 cut(s)	134, 341, 428, 1067, 1076
Hpy8I	GTNNAC	2 cut(s)	114, 375
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	6 cut(s)	337, 625, 959, 1083, 1143, 1249
HpyCH4V	TGCA	5 cut(s)	424, 558, 635, 823, 994
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 23, 97, 647, 983
HpyF3I	CTNAG	5 cut(s)	403, 732, 918, 1195, 1254
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	6 cut(s)	74, 192, 689, 819, 892, 998
HspAI	GCGC	3 cut(s)	48, 89, 975
KasI	GGCGCC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	325, 508, 520, 1008, 1072
LguI	GCTCTTC	1 cut(s)	199
LmnI	GCTCC	4 cut(s)	214, 271, 589, 619
LweI	GCATC	3 cut(s)	433, 567, 1174
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	331, 607
MalI	GATC	5 cut(s)	327, 510, 522, 1010, 1074
MboI	GATC	5 cut(s)	325, 508, 520, 1008, 1072
MboII	GAAGA	8 cut(s)	186, 356, 428, 431, 757, 815, 876, 1221
MflI	RGATCY	2 cut(s)	520, 1072
MluCI	AATT	9 cut(s)	256, 296, 381, 390, 770, 798, 806, 1035, 1259
Mly113I	GGCGCC	1 cut(s)	89
MlyI	GAGTC	7 cut(s)	89, 109, 119, 369, 910, 925, 1109
MmeI	TCCRAC	1 cut(s)	1186
Mph1103I	ATGCAT	2 cut(s)	560, 996
MseI	TTAA	4 cut(s)	255, 630, 1038, 1263
MslI	CAYNNNNRTG	1 cut(s)	69
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	5 cut(s)	14, 23, 97, 647, 983
NarI	GGCGCC	1 cut(s)	89
NcoI	CCATGG	1 cut(s)	685
NdeI	CATATG	1 cut(s)	1268
NdeII	GATC	5 cut(s)	325, 508, 520, 1008, 1072
NlaIII	CATG	6 cut(s)	74, 192, 689, 819, 892, 998
NlaIV	GGNNCC	3 cut(s)	90, 288, 1074
NmeAIII	GCCGAG	1 cut(s)	133
NsiI	ATGCAT	2 cut(s)	560, 996
NspI	RCATGY	3 cut(s)	192, 819, 998
PaeI	GCATGC	1 cut(s)	192
PciI	ACATGT	1 cut(s)	815
PciSI	GCTCTTC	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	1 cut(s)	1239
PfeI	GAWTC	2 cut(s)	277, 739
PleI	GAGTC	7 cut(s)	89, 109, 118, 368, 910, 925, 1109
PluTI	GGCGCC	1 cut(s)	92
PpsI	GAGTC	7 cut(s)	89, 109, 118, 368, 910, 925, 1109
PscI	ACATGT	1 cut(s)	815
PshBI	ATTAAT	2 cut(s)	255, 630
PspFI	CCCAGC	1 cut(s)	50
PspN4I	GGNNCC	3 cut(s)	90, 288, 1074
PspPI	GGNCC	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	520, 1072
RsaI	GTAC	2 cut(s)	662, 830
RsaNI	GTAC	2 cut(s)	661, 829
RseI	CAYNNNNRTG	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	112
SapI	GCTCTTC	1 cut(s)	199
SaqAI	TTAA	4 cut(s)	255, 630, 1038, 1263
Sau3AI	GATC	5 cut(s)	325, 508, 520, 1008, 1072
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	7 cut(s)	89, 109, 119, 369, 910, 925, 1109
SfaNI	GCATC	3 cut(s)	433, 567, 1174
SfcI	CTRYAG	1 cut(s)	784
SfoI	GGCGCC	1 cut(s)	90
SinI	GGWCC	1 cut(s)	136
SmiMI	CAYNNNNRTG	1 cut(s)	69
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	9 cut(s)	256, 296, 381, 390, 770, 798, 806, 1035, 1259
SsiI	CCGC	1 cut(s)	355
SspDI	GGCGCC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	182
StyI	CCWWGG	4 cut(s)	34, 515, 685, 978
TaaI	ACNGT	6 cut(s)	337, 625, 959, 1083, 1143, 1249
TaqI	TCGA	6 cut(s)	44, 113, 118, 203, 1233, 1242
TasI	AATT	9 cut(s)	256, 296, 381, 390, 770, 798, 806, 1035, 1259
TatI	WGTACW	2 cut(s)	660, 828
TfiI	GAWTC	2 cut(s)	277, 739
Tru1I	TTAA	4 cut(s)	255, 630, 1038, 1263
Tru9I	TTAA	4 cut(s)	255, 630, 1038, 1263
TscAI	CASTG	5 cut(s)	357, 796, 964, 1146, 1252
TspDTI	ATGAA	2 cut(s)	59, 1182
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	5 cut(s)	357, 796, 964, 1146, 1252
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	2 cut(s)	255, 630
XapI	RAATTY	3 cut(s)	296, 390, 1259
XceI	RCATGY	3 cut(s)	192, 819, 998
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	182
Zsp2I	ATGCAT	2 cut(s)	560, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.