Rorug02G0579100

Histone-lysine n-methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0008681
Physical Location & Seq
Forward (+)
70248606 .. 70251893
3288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0579100.1

Sequence Viewer

Length: 1317 bp
ATGTTCAGCTCTGCAGAGTTCTTCATGATCTTTGATCAGGCACCATTGTACCATCCTCAATCAAAAATGGGAATGAAGTTAACAAAGGAAGAAGCCATGCCGGCGCCAGGAAAACTTGAAAGCCTAACCTTACAACACCAGCTGATTAATTGCCTAAGTAATAGCTTTTACATCCGTAACTTGGTGTCCAAGCAACGGAGGCGAATGCTTGTTGCTGGCTATGATCTTGACATGTCTTACATCACCGACCGCATATTGGCAATGTCGTTCCCCGCGGAGCGAATGCGTGCAATGTATCGAAATCCTCTCTGGCAGGTTAAGTCTGTGCTTGATATGAGGCATCCAGAACATTACAAGATCTATAACCTCTGCATTGAACAACATTATGATCCATCGCATTTCTATGGCCGAGTGGAGAGGTATCCTTTTGACGATAACCATGTTCCACCTCTTGAAATGGTCAAGCTTTTCTGCGAAAGCGTGCAATCATGGATCAAGAGTGACCCAGAAAACATAGCTGTTATACACTGCATGGCAGGCAAAGGTCGAACAGGCTTAATGGTATGCGCGTATCTAGTCTACTGTGGGATGTCAGGAGAAGAAGCACTTCAACTCTATGCTCATAGACGGACCACCAATAATGAAGGAGTCTCAATACCAAGCCAACGTCGTTACGTAGGGTACTGGGAAAATTGTCTCTCTTTCCCTTCGGATGTCGATGATGAACCTCCTGAAGTCAACTTACCTCAAATGTGTAGCAGAGAATTGCGAAGAATCCGATTCTATGACACTCTTAACATTGATAAGATCTTCTTTGTGGTCTCTGAGTTGCAAGAGATTCCGGGTCAGATTTATCGTCCATCAATAGAAGTTTCCAGGAGTTCTTGCAAACAAATCAAGAAAGGGTATTCGAGAACAAGCAGTCCGCGCTATTATATTTCTTTCATTGAAGGTGATGAAGAAGAGAAGAAATCAGATTCAGATGAACCTCGTGTTGTTGTTCAAATGGATACAGAAAGTTCCATACTATACCAGAAGGCCTGTCTTGAATATTACTTTGATAAGCCTGTAAAGGTAACCGGAGATGTGCGTGTCATATTCTATCAAAAAATGAATGGTGGGCGTCTCTTCTACGCTTGCTTCAACACCGCTTTCATTAAGAACAGCTTGCTACAGCTCACTGTTCGGGATTTGGATAAAATTGGGAAGAAAGGAAGATCAATATGTGGCCCTAACTTCTGCTTGGAGTTGCTATTTGGTCCTGCCAATGCGAAACACTCACCCTCAACTCCACATGACAATCATGATGTGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Rubis-subs-bind

Protein Analysis

438

Amino Acids

50.81

Weight (kDa)

7.53

Isoelectric Point (pI)

66.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTP-NADK PF22741 106 - 214 2.7e-07 DSP-PTPase phosphatase fused to NAD+ Kinase
Tc-R-P PF22785 138 - 196 9.6e-09 Polymorphic toxin system, DSP-PTPase phosphatase
PTP-SAK PF22784 141 - 204 7.4e-09 Swiss Army Knife protein, DSP-PTPase phosphatase domain
PTEN_C2 PF10409 338 - 420 1.6e-12 C2 domain of PTEN tumour-suppressor protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 304
AccB1I GGYRCC 2 cut(s) 40, 103
AccI GTMKAC 1 cut(s) 579
AccII CGCG 3 cut(s) 275, 569, 928
AciI CCGC 5 cut(s) 250, 273, 275, 926, 1149
AclWI GGATC 2 cut(s) 383, 500
AcoI YGGCCR 1 cut(s) 406
AcuI CTGAAG 1 cut(s) 753
AcyI GRCGYC 2 cut(s) 104, 1123
AfaI GTAC 2 cut(s) 50, 683
AfiI CCNNNNNNNGG 4 cut(s) 107, 181, 195, 256
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 8 cut(s) 119, 377, 455, 611, 950, 1004, 1049, 1144
AjnI CCWGG 2 cut(s) 106, 875
AloI GAACNNNNNNTCC 2 cut(s) 907, 939
AluBI AGCT 7 cut(s) 9, 142, 165, 466, 518, 1167, 1177
AluI AGCT 7 cut(s) 9, 142, 165, 466, 518, 1167, 1177
Alw26I GTCTC 4 cut(s) 655, 701, 826, 1130
AlwI GGATC 2 cut(s) 383, 500
AoxI GGCC 3 cut(s) 406, 1038, 1228
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 1 cut(s) 606
AspLEI GCGC 3 cut(s) 106, 569, 930
AspS9I GGNCC 3 cut(s) 630, 1229, 1259
AsuC2I CCSGG 1 cut(s) 843
AsuHPI GGTGA 3 cut(s) 235, 965, 1272
AvaII GGWCC 2 cut(s) 630, 1259
BaeI ACNNNNGTAYC 2 cut(s) 32, 65
BanI GGYRCC 2 cut(s) 40, 103
BarI GAAGNNNNNNTAC 2 cut(s) 726, 758
BauI CACGAG 1 cut(s) 990
BccI CCATC 3 cut(s) 60, 400, 868
BciT130I CCWGG 2 cut(s) 108, 877
BciVI GTATCC 2 cut(s) 432, 1003
BclI TGATCA 1 cut(s) 34
BcnI CCSGG 1 cut(s) 843
BcoDI GTCTC 4 cut(s) 655, 701, 826, 1130
BfaI CTAG 1 cut(s) 575
BfmI CTRYAG 2 cut(s) 12, 1172
BfoI RGCGCY 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 304
BfuI GTATCC 2 cut(s) 432, 1003
BglI GCCNNNNNGGC 1 cut(s) 101
BglII AGATCT 2 cut(s) 357, 807
Bme1390I CCNGG 3 cut(s) 108, 843, 877
Bme18I GGWCC 2 cut(s) 630, 1259
BmgT120I GGNCC 3 cut(s) 630, 1229, 1259
BmiI GGNNCC 2 cut(s) 42, 105
BmrFI CCNGG 3 cut(s) 108, 843, 877
BmrI ACTGGG 1 cut(s) 694
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 694
BpuMI CCSGG 1 cut(s) 843
BsaAI YACGTR 1 cut(s) 676
BsaHI GRCGYC 2 cut(s) 104, 1123
BsaI GGTCTC 1 cut(s) 826
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 1 cut(s) 1079
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 181, 195, 256
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 689
Bse3DI GCAATG 2 cut(s) 267, 297
BseBI CCWGG 2 cut(s) 108, 877
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 5 cut(s) 52, 171, 340, 594, 718
BseLI CCNNNNNNNGG 4 cut(s) 107, 181, 195, 256
BseMI GCAATG 2 cut(s) 267, 297
BseMII CTCAG 1 cut(s) 816
BseNI ACTGG 1 cut(s) 689
Bsh1236I CGCG 3 cut(s) 275, 569, 928
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 3 cut(s) 408, 1040, 1230
BshNI GGYRCC 2 cut(s) 40, 103
BsiEI CGRYCG 1 cut(s) 250
BsiSI CCGG 3 cut(s) 101, 842, 1080
BslI CCNNNNNNNGG 4 cut(s) 107, 181, 195, 256
BsmAI GTCTC 4 cut(s) 655, 701, 826, 1130
BsmBI CGTCTC 1 cut(s) 1130
BsmI GAATGC 2 cut(s) 210, 288
BsnI GGCC 3 cut(s) 408, 1040, 1230
Bso31I GGTCTC 1 cut(s) 826
Bsp143I GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
BspACI CCGC 5 cut(s) 250, 273, 275, 926, 1149
BspANI GGCC 3 cut(s) 408, 1040, 1230
BspCNI CTCAG 1 cut(s) 817
BspFNI CGCG 3 cut(s) 275, 569, 928
BspHI TCATGA 2 cut(s) 24, 1303
BspLI GGNNCC 2 cut(s) 42, 105
BspMAI CTGCAG 1 cut(s) 16
BspMI ACCTGC 1 cut(s) 304
BspPI GGATC 2 cut(s) 383, 500
BspT107I GGYRCC 2 cut(s) 40, 103
BspTNI GGTCTC 1 cut(s) 826
BsrDI GCAATG 2 cut(s) 267, 297
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 689
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
BssNI GRCGYC 2 cut(s) 104, 1123
BssSI CACGAG 1 cut(s) 990
Bst2BI CACGAG 1 cut(s) 990
Bst2UI CCWGG 2 cut(s) 108, 877
Bst4CI ACNGT 2 cut(s) 584, 1183
Bst6I CTCTTC 2 cut(s) 957, 1133
BstACI GRCGYC 2 cut(s) 104, 1123
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 7 cut(s) 102, 217, 288, 482, 538, 1138, 1169
BstDEI CTNAG 2 cut(s) 155, 825
BstDSI CCRYGG 1 cut(s) 273
BstEII GGTNACC 1 cut(s) 1075
BstF5I GGATG 5 cut(s) 52, 171, 340, 594, 718
BstFNI CGCG 3 cut(s) 275, 569, 928
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 106, 569, 930
BstKTI GATC 8 cut(s) 30, 37, 226, 360, 391, 495, 810, 1220
BstMAI GTCTC 4 cut(s) 655, 701, 826, 1130
BstMBI GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 101, 199, 537, 927
BstNI CCWGG 2 cut(s) 108, 877
BstNSI RCATGY 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 1075
BstSCI CCNGG 3 cut(s) 106, 841, 875
BstSFI CTRYAG 2 cut(s) 12, 1172
BstSNI TACGTA 1 cut(s) 676
BstUI CGCG 3 cut(s) 275, 569, 928
BstX2I RGATCY 2 cut(s) 357, 807
BstYI RGATCY 2 cut(s) 357, 807
BsuI GTATCC 2 cut(s) 432, 1003
BsuRI GGCC 3 cut(s) 408, 1040, 1230
BtgI CCRYGG 1 cut(s) 273
BtgZI GCGATG 1 cut(s) 378
BtsCI GGATG 5 cut(s) 52, 171, 340, 594, 718
BtsI GCAGTG 1 cut(s) 526
BtsIMutI CAGTG 2 cut(s) 526, 1179
BveI ACCTGC 1 cut(s) 304
Cac8I GCNNGC 7 cut(s) 102, 217, 288, 482, 538, 1138, 1169
CciI TCATGA 2 cut(s) 24, 1303
CfoI GCGC 3 cut(s) 106, 569, 930
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 3 cut(s) 630, 1229, 1259
Cfr42I CCGCGG 1 cut(s) 276
CseI GACGC 1 cut(s) 1112
Csp6I GTAC 2 cut(s) 49, 682
CviAII CATG 8 cut(s) 25, 97, 232, 440, 489, 532, 1295, 1304
CviQI GTAC 2 cut(s) 49, 682
DdeI CTNAG 2 cut(s) 155, 825
DinI GGCGCC 1 cut(s) 105
DpnI GATC 8 cut(s) 29, 36, 225, 359, 390, 494, 809, 1219
DpnII GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
EaeI YGGCCR 1 cut(s) 406
Eam1104I CTCTTC 2 cut(s) 957, 1133
EarI CTCTTC 2 cut(s) 957, 1133
Eco105I TACGTA 1 cut(s) 676
Eco147I AGGCCT 1 cut(s) 1040
Eco31I GGTCTC 1 cut(s) 826
Eco47I GGWCC 2 cut(s) 630, 1259
Eco57I CTGAAG 1 cut(s) 753
Eco91I GGTNACC 1 cut(s) 1075
EcoO65I GGTNACC 1 cut(s) 1075
EcoRII CCWGG 2 cut(s) 106, 875
EgeI GGCGCC 1 cut(s) 105
EheI GGCGCC 1 cut(s) 105
Esp3I CGTCTC 1 cut(s) 1130
FaeI CATG 8 cut(s) 28, 100, 235, 443, 492, 535, 1298, 1307
FalI AAGNNNNNCTT 6 cut(s) 591, 623, 797, 829, 1151, 1183
FatI CATG 8 cut(s) 24, 96, 231, 439, 488, 531, 1294, 1303
FauI CCCGC 1 cut(s) 280
FbaI TGATCA 1 cut(s) 34
FblI GTMKAC 1 cut(s) 579
FokI GGATG 5 cut(s) 39, 158, 327, 601, 725
FspBI CTAG 1 cut(s) 575
GlaI GCGC 3 cut(s) 105, 568, 929
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 3 cut(s) 408, 1040, 1230
HapII CCGG 3 cut(s) 101, 842, 1080
HgaI GACGC 1 cut(s) 1112
HhaI GCGC 3 cut(s) 106, 569, 930
Hin1I GRCGYC 2 cut(s) 104, 1123
Hin1II CATG 8 cut(s) 28, 100, 235, 443, 492, 535, 1298, 1307
Hin6I GCGC 3 cut(s) 104, 567, 928
HinP1I GCGC 3 cut(s) 104, 567, 928
HincII GTYRAC 2 cut(s) 81, 739
HindII GTYRAC 2 cut(s) 81, 739
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 5 cut(s) 648, 774, 780, 838, 977
HpaI GTTAAC 1 cut(s) 81
HpaII CCGG 3 cut(s) 101, 842, 1080
HphI GGTGA 3 cut(s) 235, 965, 1272
Hpy166II GTNNAC 3 cut(s) 81, 580, 739
Hpy188I TCNGA 6 cut(s) 712, 779, 826, 849, 976, 982
Hpy8I GTNNAC 3 cut(s) 81, 580, 739
Hpy99I CGWCG 1 cut(s) 672
HpyAV CCTTC 4 cut(s) 638, 717, 944, 1030
HpyCH4III ACNGT 2 cut(s) 584, 1183
HpyCH4IV ACGT 2 cut(s) 667, 675
HpyCH4V TGCA 7 cut(s) 14, 290, 372, 484, 531, 832, 888
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 199, 537, 927
HpyF3I CTNAG 2 cut(s) 155, 825
HpySE526I ACGT 2 cut(s) 667, 675
Hsp92I GRCGYC 2 cut(s) 104, 1123
Hsp92II CATG 8 cut(s) 28, 100, 235, 443, 492, 535, 1298, 1307
HspAI GCGC 3 cut(s) 104, 567, 928
KasI GGCGCC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 34
KspAI GTTAAC 1 cut(s) 81
KspI CCGCGG 1 cut(s) 276
Kzo9I GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
LmnI GCTCC 1 cut(s) 277
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 575
MaeII ACGT 2 cut(s) 667, 675
MaeIII GTNAC 4 cut(s) 176, 500, 671, 1075
MalI GATC 8 cut(s) 29, 36, 225, 359, 390, 494, 809, 1219
MboI GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
MflI RGATCY 2 cut(s) 357, 807
MluCI AATT 4 cut(s) 148, 691, 764, 1200
Mly113I GGCGCC 1 cut(s) 104
MlyI GAGTC 1 cut(s) 657
MroNI GCCGGC 1 cut(s) 100
MroXI GAANNNNTTC 1 cut(s) 606
MseI TTAA 6 cut(s) 80, 147, 318, 557, 795, 1158
MslI CAYNNNNRTG 1 cut(s) 402
MspA1I CMGCKG 2 cut(s) 142, 275
MspI CCGG 3 cut(s) 101, 842, 1080
MspR9I CCNGG 3 cut(s) 108, 843, 877
Mva1269I GAATGC 2 cut(s) 210, 288
MvaI CCWGG 2 cut(s) 108, 877
MvnI CGCG 3 cut(s) 275, 569, 928
MwoI GCNNNNNNNGC 4 cut(s) 101, 199, 537, 927
NaeI GCCGGC 1 cut(s) 102
NarI GGCGCC 1 cut(s) 104
NciI CCSGG 1 cut(s) 843
NdeII GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 8 cut(s) 28, 100, 235, 443, 492, 535, 1298, 1307
NlaIV GGNNCC 2 cut(s) 42, 105
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 235
PagI TCATGA 2 cut(s) 24, 1303
PceI AGGCCT 1 cut(s) 1040
PciI ACATGT 1 cut(s) 231
PctI GAATGC 2 cut(s) 210, 288
PdiI GCCGGC 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 606
PfeI GAWTC 4 cut(s) 774, 780, 838, 977
PfoI TCCNGGA 1 cut(s) 875
PleI GAGTC 1 cut(s) 656
PluTI GGCGCC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 656
Ppu21I YACGTR 1 cut(s) 676
PscI ACATGT 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 2 cut(s) 106, 875
PspEI GGTNACC 1 cut(s) 1075
PspGI CCWGG 2 cut(s) 106, 875
PspN4I GGNNCC 2 cut(s) 42, 105
PspPI GGNCC 3 cut(s) 630, 1229, 1259
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 357, 807
PvuII CAGCTG 1 cut(s) 142
RsaI GTAC 2 cut(s) 50, 683
RsaNI GTAC 2 cut(s) 49, 682
RseI CAYNNNNRTG 1 cut(s) 402
SacII CCGCGG 1 cut(s) 276
SaqAI TTAA 6 cut(s) 80, 147, 318, 557, 795, 1158
Sau3AI GATC 8 cut(s) 27, 34, 223, 357, 388, 492, 807, 1217
Sau96I GGNCC 3 cut(s) 630, 1229, 1259
SchI GAGTC 1 cut(s) 657
ScrFI CCNGG 3 cut(s) 108, 843, 877
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 2 cut(s) 12, 1172
SfoI GGCGCC 1 cut(s) 105
Sfr303I CCGCGG 1 cut(s) 276
SgrBI CCGCGG 1 cut(s) 276
SinI GGWCC 2 cut(s) 630, 1259
SmiMI CAYNNNNRTG 1 cut(s) 402
SnaBI TACGTA 1 cut(s) 676
Sse9I AATT 4 cut(s) 148, 691, 764, 1200
SseBI AGGCCT 1 cut(s) 1040
SsiI CCGC 5 cut(s) 250, 273, 275, 926, 1149
SspDI GGCGCC 1 cut(s) 103
SspI AATATT 1 cut(s) 1052
SspMI CTAG 1 cut(s) 575
StuI AGGCCT 1 cut(s) 1040
StyD4I CCNGG 3 cut(s) 106, 841, 875
TaaI ACNGT 2 cut(s) 584, 1183
TaiI ACGT 2 cut(s) 670, 678
TaqI TCGA 4 cut(s) 298, 547, 717, 911
TasI AATT 4 cut(s) 148, 691, 764, 1200
TfiI GAWTC 4 cut(s) 774, 780, 838, 977
Tru1I TTAA 6 cut(s) 80, 147, 318, 557, 795, 1158
Tru9I TTAA 6 cut(s) 80, 147, 318, 557, 795, 1158
TscAI CASTG 2 cut(s) 533, 1186
TseFI GTSAC 1 cut(s) 500
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 9 cut(s) 13, 89, 657, 738, 934, 972, 999, 1127, 1144
TspGWI ACGGA 3 cut(s) 164, 211, 643
TspRI CASTG 2 cut(s) 533, 1186
VpaK11BI GGWCC 2 cut(s) 630, 1259
VspI ATTAAT 1 cut(s) 147
XceI RCATGY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 579
XmnI GAANNNNTTC 1 cut(s) 606
XspI CTAG 1 cut(s) 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.