Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021138.1

Orthogroup ID

OG0008681

Physical Location & Seq

Genomic Coordinates Forward (+)

41 .. 966

Gene Structure 926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021138.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atggaggtcattcctctacaccacagctgcacctggctccctattctctcccgcggctcatcgatttcacggcggaggagttattccagggtttcgcctggatccattcgccggagaaatgtgtgcctggcctccggctccgagaccttgatcgggtcacgtaaggaggaaggcaagcgtcgcaaggccgtgaacgagagagacgaggccgaggacttgaaatcgtggatgcacaagaatgggctgccgccgtgcaaggttgtgctcaaggaacgaccgtcgtatgatgagaagcacagcgctattcactacgtagctgctagtgaagatcttgaggttggtgatgttgcatttgcggtgccgaattcgctagttgtgactctgaagagagtgttggggaacgaaactatagcggaattgttaactacaaacaagttatccgaattggcatgcttggcactctatttgatgtatgagaagaaacaagggaagaagtcattttggtttccgtacatcagagaacttgatcgtcagcgaggaagaggtcagttagcggtggagtctcccctcttatggtcggagaccgagctggcttatcttaccggcagccccacaaaggtatcatttgctagtttatctttaacatttgcaaaatgccttcttactctttttctgtcaagtaagtttgtggaatacttgaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind

Protein Analysis

234

Amino Acids

26.48

Weight (kDa)

9.43

Isoelectric Point (pI)

65.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14260 AT5G14260 AT5G14260 AT5G14260
fragaria_vesca	FvH4_6g52980 FvH4_6g52980
malus_domestica	MD09G1015500.v1.1 MD17G1015800.v1.1
prunus_persica	Prupe.3G302300_v2.0.a1
pyrus_communis	pycom111g01260
rosa_chinensis	RchiOBHm_Chr2g0174721
rosa_laevigata	RLG00000022290
rosa_multiflora	Rmu_co8074946.1_g000001 Rmu_sc0021138.1_g000001 Rmu_sc0021139.1_g000001 Rmu_ssc0000313.1_g000005
rosa_roxburghii	Rroxscaffold_2G00077790
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660300 Rh2BG671100 Rh2CG634400 Rh2DG684700
rosa_wichuraiana	Rw2G054090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccII	CGCG	1 cut(s)	54
AciI	CCGC	7 cut(s)	52, 54, 73, 248, 356, 413, 554
AclWI	GGATC	2 cut(s)	96, 109
AcsI	RAATTY	1 cut(s)	364
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	512
AfeI	AGCGCT	1 cut(s)	301
AfiI	CCNNNNNNNGG	4 cut(s)	111, 153, 573, 616
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	4 cut(s)	32, 86, 97, 126
AjuI	GAANNNNNNNTTGG	2 cut(s)	377, 409
AluBI	AGCT	3 cut(s)	27, 317, 589
AluI	AGCT	3 cut(s)	27, 317, 589
Alw21I	GWGCWC	1 cut(s)	267
Alw26I	GTCTC	4 cut(s)	137, 195, 567, 575
AlwI	GGATC	2 cut(s)	96, 109
Aor51HI	AGCGCT	1 cut(s)	301
AoxI	GGCC	3 cut(s)	129, 186, 207
ApeKI	GCWGC	4 cut(s)	27, 244, 317, 606
ApoI	RAATTY	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	603, 636
BamHI	GGATCC	1 cut(s)	101
BanI	GGYRCC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	14, 231, 304, 618
BceAI	ACGGC	3 cut(s)	86, 173, 235
BciT130I	CCWGG	4 cut(s)	34, 88, 99, 128
BcoDI	GTCTC	4 cut(s)	137, 195, 567, 575
BfaI	CTAG	3 cut(s)	321, 371, 630
BfmI	CTRYAG	1 cut(s)	408
BfoI	RGCGCY	1 cut(s)	303
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	6 cut(s)	28, 55, 245, 248, 318, 607
BlsI	GCNGC	6 cut(s)	29, 56, 246, 249, 319, 608
Bme1390I	CCNGG	4 cut(s)	34, 88, 99, 128
BmiI	GGNNCC	4 cut(s)	38, 103, 139, 360
BmrFI	CCNGG	4 cut(s)	34, 88, 99, 128
BmsI	GCATC	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	251, 353
Bsa29I	ATCGAT	1 cut(s)	62
BsaAI	YACGTR	2 cut(s)	161, 313
BsaI	GGTCTC	2 cut(s)	137, 575
BsaJI	CCNNGG	3 cut(s)	52, 87, 210
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 153, 573, 616
Bse118I	RCCGGY	1 cut(s)	602
BseBI	CCWGG	4 cut(s)	34, 88, 99, 128
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	3 cut(s)	52, 87, 210
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	4 cut(s)	111, 153, 573, 616
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	4 cut(s)	14, 231, 304, 618
BsgI	GTGCAG	1 cut(s)	13
Bsh1236I	CGCG	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	131, 188, 209
BshNI	GGYRCC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	278
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	112, 135, 603
BslI	CCNNNNNNNGG	4 cut(s)	111, 153, 573, 616
BsmAI	GTCTC	4 cut(s)	137, 195, 567, 575
BsmBI	CGTCTC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	131, 188, 209
Bso31I	GGTCTC	2 cut(s)	137, 575
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	4 cut(s)	101, 150, 328, 526
BspACI	CCGC	7 cut(s)	52, 54, 73, 248, 356, 413, 554
BspANI	GGCC	3 cut(s)	131, 188, 209
BspDI	ATCGAT	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	54
BspLI	GGNNCC	4 cut(s)	38, 103, 139, 360
BspPI	GGATC	2 cut(s)	96, 109
BspT107I	GGYRCC	1 cut(s)	358
BspTNI	GGTCTC	2 cut(s)	137, 575
BsrFI	RCCGGY	1 cut(s)	602
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	3 cut(s)	52, 87, 210
BssMI	GATC	4 cut(s)	101, 150, 328, 526
Bst2UI	CCWGG	4 cut(s)	34, 88, 99, 128
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	380, 535
BstBAI	YACGTR	2 cut(s)	161, 313
BstC8I	GCNNGC	3 cut(s)	176, 451, 591
BstDSI	CCRYGG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	234
BstFNI	CGCG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	104, 153, 331, 529
BstMAI	GTCTC	4 cut(s)	137, 195, 567, 575
BstMBI	GATC	4 cut(s)	101, 150, 328, 526
BstMCI	CGRYCG	1 cut(s)	278
BstMWI	GCNNNNNNNGC	3 cut(s)	180, 367, 455
BstNI	CCWGG	4 cut(s)	34, 88, 99, 128
BstNSI	RCATGY	1 cut(s)	453
BstSCI	CCNGG	4 cut(s)	32, 86, 97, 126
BstSFI	CTRYAG	1 cut(s)	408
BstSNI	TACGTA	1 cut(s)	313
BstUI	CGCG	1 cut(s)	54
BstV1I	GCAGC	4 cut(s)	14, 231, 304, 618
BstX2I	RGATCY	2 cut(s)	101, 328
BstYI	RGATCY	2 cut(s)	101, 328
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	131, 188, 209
BsuTUI	ATCGAT	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	52
BtsCI	GGATG	1 cut(s)	234
Cac8I	GCNNGC	3 cut(s)	176, 451, 591
CfoI	GCGC	1 cut(s)	302
Cfr10I	RCCGGY	1 cut(s)	602
Cfr42I	CCGCGG	1 cut(s)	55
ClaI	ATCGAT	1 cut(s)	62
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	511
CviAII	CATG	1 cut(s)	450
CviQI	GTAC	1 cut(s)	511
DpnI	GATC	4 cut(s)	103, 152, 330, 528
DpnII	GATC	4 cut(s)	101, 150, 328, 526
Eam1104I	CTCTTC	2 cut(s)	380, 535
EarI	CTCTTC	2 cut(s)	380, 535
EciI	GGCGGA	1 cut(s)	88
Eco105I	TACGTA	1 cut(s)	313
Eco31I	GGTCTC	2 cut(s)	137, 575
Eco47III	AGCGCT	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	4 cut(s)	32, 86, 97, 126
Esp3I	CGTCTC	1 cut(s)	195
FaeI	CATG	1 cut(s)	453
FaiI	YATR	5 cut(s)	285, 410, 451, 474, 574
FatI	CATG	1 cut(s)	449
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	6 cut(s)	28, 55, 245, 248, 318, 607
FokI	GGATG	1 cut(s)	241
Fsp4HI	GCNGC	6 cut(s)	28, 55, 245, 248, 318, 607
FspBI	CTAG	3 cut(s)	321, 371, 630
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	6 cut(s)	28, 55, 245, 248, 318, 607
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	3 cut(s)	131, 188, 209
HapII	CCGG	3 cut(s)	112, 135, 603
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	1 cut(s)	453
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	379, 560
HpaI	GTTAAC	1 cut(s)	423
HpaII	CCGG	3 cut(s)	112, 135, 603
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	2 cut(s)	193, 423
Hpy188I	TCNGA	5 cut(s)	142, 384, 442, 518, 580
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	2 cut(s)	193, 423
Hpy99I	CGWCG	2 cut(s)	183, 283
HpyAV	CCTTC	2 cut(s)	164, 668
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	2 cut(s)	160, 312
HpyCH4V	TGCA	5 cut(s)	30, 232, 255, 350, 650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	180, 367, 455
HpySE526I	ACGT	2 cut(s)	160, 312
Hsp92II	CATG	1 cut(s)	453
HspAI	GCGC	1 cut(s)	300
KspAI	GTTAAC	1 cut(s)	423
KspI	CCGCGG	1 cut(s)	55
Kzo9I	GATC	4 cut(s)	101, 150, 328, 526
LmnI	GCTCC	2 cut(s)	42, 143
Lsp1109I	GCAGC	4 cut(s)	14, 231, 304, 618
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	321, 371, 630
MaeII	ACGT	2 cut(s)	160, 312
MaeIII	GTNAC	2 cut(s)	156, 376
MalI	GATC	4 cut(s)	103, 152, 330, 528
MboI	GATC	4 cut(s)	101, 150, 328, 526
MboII	GAAGA	5 cut(s)	338, 397, 490, 502, 552
MflI	RGATCY	2 cut(s)	101, 328
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	3 cut(s)	364, 416, 443
MlyI	GAGTC	2 cut(s)	373, 569
MmeI	TCCRAC	1 cut(s)	558
MseI	TTAA	2 cut(s)	422, 641
MslI	CAYNNNNRTG	1 cut(s)	237
MspA1I	CMGCKG	2 cut(s)	27, 54
MspI	CCGG	3 cut(s)	112, 135, 603
MspR9I	CCNGG	4 cut(s)	34, 88, 99, 128
MvaI	CCWGG	4 cut(s)	34, 88, 99, 128
MvnI	CGCG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	180, 367, 455
NdeII	GATC	4 cut(s)	101, 150, 328, 526
NlaIII	CATG	1 cut(s)	453
NlaIV	GGNNCC	4 cut(s)	38, 103, 139, 360
NmeAIII	GCCGAG	1 cut(s)	235
NmuCI	GTSAC	2 cut(s)	156, 376
NspI	RCATGY	1 cut(s)	453
PaeI	GCATGC	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PkrI	GCNGC	6 cut(s)	29, 56, 246, 249, 319, 608
PleI	GAGTC	2 cut(s)	373, 568
PpsI	GAGTC	2 cut(s)	373, 568
Ppu21I	YACGTR	2 cut(s)	161, 313
Psp6I	CCWGG	4 cut(s)	32, 86, 97, 126
PspGI	CCWGG	4 cut(s)	32, 86, 97, 126
PspN4I	GGNNCC	4 cut(s)	38, 103, 139, 360
PsuI	RGATCY	2 cut(s)	101, 328
PvuII	CAGCTG	1 cut(s)	27
RsaI	GTAC	1 cut(s)	512
RsaNI	GTAC	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	237
SacII	CCGCGG	1 cut(s)	55
SaqAI	TTAA	2 cut(s)	422, 641
SatI	GCNGC	6 cut(s)	28, 55, 245, 248, 318, 607
Sau3AI	GATC	4 cut(s)	101, 150, 328, 526
SchI	GAGTC	2 cut(s)	373, 569
ScrFI	CCNGG	4 cut(s)	34, 88, 99, 128
SduI	GDGCHC	1 cut(s)	267
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	408
Sfr303I	CCGCGG	1 cut(s)	55
SgrBI	CCGCGG	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	3 cut(s)	266, 332, 697
SmoI	CTYRAG	3 cut(s)	266, 332, 697
SnaBI	TACGTA	1 cut(s)	313
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	3 cut(s)	364, 416, 443
SsiI	CCGC	7 cut(s)	52, 54, 73, 248, 356, 413, 554
SspMI	CTAG	3 cut(s)	321, 371, 630
StyD4I	CCNGG	4 cut(s)	32, 86, 97, 126
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	2 cut(s)	163, 315
TaqI	TCGA	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	599
TasI	AATT	3 cut(s)	364, 416, 443
TauI	GCSGC	2 cut(s)	57, 250
Tru1I	TTAA	2 cut(s)	422, 641
Tru9I	TTAA	2 cut(s)	422, 641
TseFI	GTSAC	2 cut(s)	156, 376
TseI	GCWGC	4 cut(s)	27, 244, 317, 606
Tsp45I	GTSAC	2 cut(s)	156, 376
TspGWI	ACGGA	1 cut(s)	498
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	453
XspI	CTAG	3 cut(s)	321, 371, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.