Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0008681

Physical Location & Seq

Genomic Coordinates Reverse (-)

807754 .. 810012

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01260.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

ATGGAGCTCACTCCTCCGCCCCACCGTTGCATTTGGTCCTCGCCGATTCGTTCGTCCTCCTCCTCGTACCGACCTCTCCTCGTTTCAATTTCGCCTCGGAAGACCAAGCTCCTCAGGTCCGTACCTTCTTTTGGATCGATTCGCCGGAGAAATCTGTGCTCCGCCTCCAGCTCCGAGACGTTGGTTGGGTCGCGGAAGGAGGACGGCGGCAAGCAGAGTCAGGCGGTGAGCAAGAAAGACGAGGAGGAAGACTTGAAATCTTGGATGCACAAGAACGGGCTGCCTCCTTGCAAGGTCGTGCTCAAAGACAAACCTTCCTACGACGAGAAGCTCCGGCCCATTCATTACGTAGCTGCCAGCGAAGATCTTGAGGTTGGTGATGTCGCATTTTCGGTGCCGGATTCTTTAGTTGTAACTCTCAAGAGAGTGTTGGGGAACGAAACAATTGCTGAATTATTAACTACGAACAAATTATCGGAATTGGCATGCTTGGCATTGTATCTGATGTACGAGAAGAAACAAGGAAAGAAGTCATTTTGGTATCCCTATATAAGAGAGCTCGATCGTCAGCGAGGGAGGGGTCAATTGGCGGTGGAATCACCCCTTTTATGGTCAGAAGCTGAACTGGCTCATCTTACAGGCAGCCCCACAAAGGCTGACGTTCGTGCAAGGGCCGAAGGAATTAAAAGAGAATATAATGAGCTTGACACTGTCTGGTTTATGGCTGGTTCCCTATTTCAGCAATACCCATATGATATTCCTACGGAGGCCTTCCCATTTGAGATATTCAAACAAGCTTTTGTTGCAGTTCAGTCTTGTGTAGTGCATTTGCAGAAAGTTAGTTTGGCTCAAAGATTTGCTTTGGTTCCTCTTGGGCCCCCATTGTTAGCTTACGGAAGCAACTGTAGAGCAATGTTGACGGCTGTTGATGGTGCTGTTCAGCTAGTGGTCGATCGGCCATATAAGGCAGGGGAGTCTATTGTTGTGTGGTGTGGACCGCAGCCTAATTCAAAGTTGCTTATAAACTATGGTTTTGTTGACGAAGATAATTCTTATGACCGTTTGGTGGTTGAGGCAGCTTTGAACACTGAGGATCCACAATATCAAGATAAAAGAATGGTTGCTCAAAGAAATGGAAAATTATCAGTACAAACTTTTCAGGTATATGTGGGAAAGGAAAAGGAAACGGTCTCCGATATGCTTCCCTATCTGCGACTGGGCTATGTTTCAGATCCTTCAGAGATGCAATCTGTTATCTCCTCTCAAGGTCCAATTTGTCCAAAGAGACTGGAACGTAGAACATTTGGGGACCTTGTTAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind

Protein Analysis

442

Amino Acids

49.51

Weight (kDa)

8.71

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14260 AT5G14260 AT5G14260 AT5G14260
fragaria_vesca	FvH4_6g52980 FvH4_6g52980
malus_domestica	MD09G1015500.v1.1 MD17G1015800.v1.1
prunus_persica	Prupe.3G302300_v2.0.a1
pyrus_communis	pycom111g01260
rosa_chinensis	RchiOBHm_Chr2g0174721
rosa_laevigata	RLG00000022290
rosa_multiflora	Rmu_co8074946.1_g000001 Rmu_sc0021138.1_g000001 Rmu_sc0021139.1_g000001 Rmu_ssc0000313.1_g000005
rosa_roxburghii	Rroxscaffold_2G00077790
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660300 Rh2BG671100 Rh2CG634400 Rh2DG684700
rosa_wichuraiana	Rw2G054090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	1 cut(s)	193
AciI	CCGC	7 cut(s)	17, 162, 193, 207, 224, 590, 998
AclWI	GGATC	4 cut(s)	142, 1088, 1101, 1226
AcoI	YGGCCR	1 cut(s)	956
AcuI	CTGAAG	1 cut(s)	1221
AfaI	GTAC	4 cut(s)	68, 123, 509, 1149
AfiI	CCNNNNNNNGG	5 cut(s)	131, 609, 652, 1066, 1318
AgsI	TTSAA	5 cut(s)	87, 256, 790, 1011, 1084
AjuI	GAANNNNNNNTTGG	2 cut(s)	827, 859
Alw21I	GWGCWC	4 cut(s)	9, 161, 303, 561
Alw26I	GTCTC	3 cut(s)	170, 1195, 1279
AlwI	GGATC	4 cut(s)	142, 1088, 1101, 1226
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	5 cut(s)	335, 672, 768, 875, 956
ApaI	GGGCCC	1 cut(s)	879
ApeKI	GCWGC	5 cut(s)	280, 353, 642, 1000, 1076
AspS9I	GGNCC	9 cut(s)	36, 117, 336, 672, 875, 876, 995, 1268, 1309
AsuHPI	GGTGA	3 cut(s)	238, 389, 591
AvaII	GGWCC	5 cut(s)	36, 117, 995, 1268, 1309
AxyI	CCTNAGG	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	879
BamHI	GGATCC	1 cut(s)	1093
BanI	GGYRCC	1 cut(s)	394
BanII	GRGCYC	3 cut(s)	9, 561, 879
BbsI	GAAGAC	2 cut(s)	107, 255
Bbv12I	GWGCWC	4 cut(s)	9, 161, 303, 561
BbvI	GCAGC	5 cut(s)	267, 340, 654, 1012, 1088
BccI	CCATC	1 cut(s)	923
BceAI	ACGGC	2 cut(s)	220, 936
BcgI	CGANNNNNNTGC	2 cut(s)	428, 462
BciVI	GTATCC	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	170, 1195, 1279
BfaI	CTAG	1 cut(s)	944
BfmI	CTRYAG	1 cut(s)	904
BfuI	GTATCC	1 cut(s)	552
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	6 cut(s)	208, 281, 354, 643, 1001, 1077
BlsI	GCNGC	6 cut(s)	209, 282, 355, 644, 1002, 1078
Bme18I	GGWCC	5 cut(s)	36, 117, 995, 1268, 1309
BmgT120I	GGNCC	9 cut(s)	36, 117, 336, 672, 875, 876, 995, 1268, 1309
BmiI	GGNNCC	7 cut(s)	396, 730, 867, 877, 878, 1095, 1310
BmrI	ACTGGG	1 cut(s)	1226
BmsI	GCATC	2 cut(s)	255, 1233
BmuI	ACTGGG	1 cut(s)	1226
BpiI	GAAGAC	2 cut(s)	107, 255
BpmI	CTGGAG	1 cut(s)	151
BpuEI	CTTGAG	3 cut(s)	389, 404, 1248
Bsa29I	ATCGAT	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	349
BsaI	GGTCTC	1 cut(s)	1195
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	5 cut(s)	131, 609, 652, 1066, 1318
Bse1I	ACTGG	3 cut(s)	630, 1221, 1293
Bse21I	CCTNAGG	1 cut(s)	113
Bse3DI	GCAATG	1 cut(s)	918
BseCI	ATCGAT	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	270
BseLI	CCNNNNNNNGG	5 cut(s)	131, 609, 652, 1066, 1318
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	2 cut(s)	127, 1080
BseNI	ACTGG	3 cut(s)	630, 1221, 1293
BseRI	GAGGAG	6 cut(s)	49, 52, 68, 101, 257, 1249
BseSI	GKGCMC	1 cut(s)	879
BseXI	GCAGC	5 cut(s)	267, 340, 654, 1012, 1088
Bsh1236I	CGCG	1 cut(s)	193
Bsh1285I	CGRYCG	2 cut(s)	565, 955
BshFI	GGCC	5 cut(s)	337, 674, 770, 877, 958
BshNI	GGYRCC	1 cut(s)	394
BshVI	ATCGAT	1 cut(s)	137
BsiEI	CGRYCG	2 cut(s)	565, 955
BsiHKAI	GWGCWC	4 cut(s)	9, 161, 303, 561
BsiSI	CCGG	3 cut(s)	145, 334, 398
BslFI	GGGAC	1 cut(s)	1322
BslI	CCNNNNNNNGG	5 cut(s)	131, 609, 652, 1066, 1318
BsmAI	GTCTC	3 cut(s)	170, 1195, 1279
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	1322
BsnI	GGCC	5 cut(s)	337, 674, 770, 877, 958
Bso31I	GGTCTC	1 cut(s)	1195
Bsp120I	GGGCCC	1 cut(s)	875
Bsp1286I	GDGCHC	5 cut(s)	9, 161, 303, 561, 879
Bsp143I	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
BspACI	CCGC	7 cut(s)	17, 162, 193, 207, 224, 590, 998
BspANI	GGCC	5 cut(s)	337, 674, 770, 877, 958
BspCNI	CTCAG	2 cut(s)	126, 1081
BspDI	ATCGAT	1 cut(s)	137
BspFNI	CGCG	1 cut(s)	193
BspLI	GGNNCC	7 cut(s)	396, 730, 867, 877, 878, 1095, 1310
BspPI	GGATC	4 cut(s)	142, 1088, 1101, 1226
BspT107I	GGYRCC	1 cut(s)	394
BspTNI	GGTCTC	1 cut(s)	1195
BsrDI	GCAATG	1 cut(s)	918
BsrI	ACTGG	3 cut(s)	630, 1221, 1293
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
Bst4CI	ACNGT	5 cut(s)	26, 712, 905, 1061, 1189
BstBAI	YACGTR	1 cut(s)	349
BstC8I	GCNNGC	3 cut(s)	212, 358, 487
BstDEI	CTNAG	2 cut(s)	113, 1089
BstENI	CCTNNNNNAGG	1 cut(s)	1316
BstF5I	GGATG	1 cut(s)	270
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	6 cut(s)	137, 367, 565, 955, 1096, 1234
BstMAI	GTCTC	3 cut(s)	170, 1195, 1279
BstMBI	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
BstMCI	CGRYCG	2 cut(s)	565, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	491, 626, 803
BstNSI	RCATGY	1 cut(s)	489
BstSFI	CTRYAG	1 cut(s)	904
BstSLI	GKGCMC	1 cut(s)	879
BstSNI	TACGTA	1 cut(s)	349
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	5 cut(s)	267, 340, 654, 1012, 1088
BstV2I	GAAGAC	2 cut(s)	107, 255
BstX2I	RGATCY	3 cut(s)	364, 1093, 1231
BstYI	RGATCY	3 cut(s)	364, 1093, 1231
Bsu15I	ATCGAT	1 cut(s)	137
Bsu36I	CCTNAGG	1 cut(s)	113
BsuI	GTATCC	1 cut(s)	552
BsuRI	GGCC	5 cut(s)	337, 674, 770, 877, 958
BsuTUI	ATCGAT	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	270
BtsIMutI	CAGTG	2 cut(s)	708, 1086
Cac8I	GCNNGC	3 cut(s)	212, 358, 487
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr13I	GGNCC	9 cut(s)	36, 117, 336, 672, 875, 876, 995, 1268, 1309
ClaI	ATCGAT	1 cut(s)	137
Csp6I	GTAC	4 cut(s)	67, 122, 508, 1148
CviAII	CATG	1 cut(s)	486
CviQI	GTAC	4 cut(s)	67, 122, 508, 1148
DdeI	CTNAG	2 cut(s)	113, 1089
DpnI	GATC	6 cut(s)	136, 366, 564, 954, 1095, 1233
DpnII	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
EaeI	YGGCCR	1 cut(s)	956
EciI	GGCGGA	2 cut(s)	6, 151
Ecl136II	GAGCTC	2 cut(s)	7, 559
Eco105I	TACGTA	1 cut(s)	349
Eco147I	AGGCCT	1 cut(s)	770
Eco24I	GRGCYC	3 cut(s)	9, 561, 879
Eco31I	GGTCTC	1 cut(s)	1195
Eco47I	GGWCC	5 cut(s)	36, 117, 995, 1268, 1309
Eco53kI	GAGCTC	2 cut(s)	7, 559
Eco57I	CTGAAG	1 cut(s)	1221
Eco81I	CCTNAGG	1 cut(s)	113
EcoICRI	GAGCTC	2 cut(s)	7, 559
EcoNI	CCTNNNNNAGG	1 cut(s)	1316
EcoO109I	RGGNCCY	2 cut(s)	876, 1309
EcoT38I	GRGCYC	3 cut(s)	9, 561, 879
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	1 cut(s)	489
FalI	AAGNNNNNCTT	2 cut(s)	844, 876
FaqI	GGGAC	1 cut(s)	1322
FatI	CATG	1 cut(s)	485
FauNDI	CATATG	1 cut(s)	751
Fnu4HI	GCNGC	6 cut(s)	208, 281, 354, 643, 1001, 1077
FokI	GGATG	1 cut(s)	277
FriOI	GRGCYC	3 cut(s)	9, 561, 879
Fsp4HI	GCNGC	6 cut(s)	208, 281, 354, 643, 1001, 1077
FspBI	CTAG	1 cut(s)	944
GluI	GCNGC	6 cut(s)	208, 281, 354, 643, 1001, 1077
GsuI	CTGGAG	1 cut(s)	151
HaeIII	GGCC	5 cut(s)	337, 674, 770, 877, 958
HapII	CCGG	3 cut(s)	145, 334, 398
Hin1II	CATG	1 cut(s)	489
HincII	GTYRAC	2 cut(s)	918, 1039
HindII	GTYRAC	2 cut(s)	918, 1039
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	6 cut(s)	46, 139, 217, 401, 596, 974
HpaII	CCGG	3 cut(s)	145, 334, 398
HphI	GGTGA	3 cut(s)	238, 389, 591
Hpy166II	GTNNAC	3 cut(s)	918, 995, 1039
Hpy188I	TCNGA	8 cut(s)	99, 175, 478, 504, 616, 1195, 1231, 1240
Hpy188III	TCNNGA	3 cut(s)	368, 421, 1106
Hpy8I	GTNNAC	3 cut(s)	918, 995, 1039
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	6 cut(s)	135, 190, 324, 671, 781, 1245
HpyCH4III	ACNGT	5 cut(s)	26, 712, 905, 1061, 1189
HpyCH4IV	ACGT	4 cut(s)	179, 348, 660, 1294
HpyCH4V	TGCA	8 cut(s)	30, 268, 291, 668, 806, 826, 832, 1246
HpyF10VI	GCNNNNNNNGC	3 cut(s)	491, 626, 803
HpyF3I	CTNAG	2 cut(s)	113, 1089
HpySE526I	ACGT	4 cut(s)	179, 348, 660, 1294
Hsp92II	CATG	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
LmnI	GCTCC	5 cut(s)	4, 114, 164, 176, 336
Lsp1109I	GCAGC	5 cut(s)	267, 340, 654, 1012, 1088
LweI	GCATC	2 cut(s)	255, 1233
MaeI	CTAG	1 cut(s)	944
MaeII	ACGT	4 cut(s)	179, 348, 660, 1294
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	6 cut(s)	136, 366, 564, 954, 1095, 1233
MboI	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
MboII	GAAGA	5 cut(s)	112, 260, 374, 526, 1055
MfeI	CAATTG	2 cut(s)	444, 584
MflI	RGATCY	3 cut(s)	364, 1093, 1231
MhlI	GDGCHC	5 cut(s)	9, 161, 303, 561, 879
MlyI	GAGTC	2 cut(s)	226, 983
MseI	TTAA	4 cut(s)	458, 684, 1317, 1324
MspI	CCGG	3 cut(s)	145, 334, 398
MunI	CAATTG	2 cut(s)	444, 584
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	3 cut(s)	491, 626, 803
NdeI	CATATG	1 cut(s)	751
NdeII	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
NlaIII	CATG	1 cut(s)	489
NlaIV	GGNNCC	7 cut(s)	396, 730, 867, 877, 878, 1095, 1310
NspI	RCATGY	1 cut(s)	489
PaeI	GCATGC	1 cut(s)	489
PceI	AGGCCT	1 cut(s)	770
PfeI	GAWTC	4 cut(s)	46, 139, 401, 596
PflFI	GACNNNGTC	1 cut(s)	710
PkrI	GCNGC	6 cut(s)	209, 282, 355, 644, 1002, 1078
Ple19I	CGATCG	2 cut(s)	565, 955
PleI	GAGTC	2 cut(s)	225, 982
PpsI	GAGTC	2 cut(s)	225, 982
Ppu21I	YACGTR	1 cut(s)	349
PpuMI	RGGWCCY	1 cut(s)	1309
PsiI	TTATAA	1 cut(s)	1022
Psp124BI	GAGCTC	2 cut(s)	9, 561
Psp5II	RGGWCCY	1 cut(s)	1309
PspN4I	GGNNCC	7 cut(s)	396, 730, 867, 877, 878, 1095, 1310
PspOMI	GGGCCC	1 cut(s)	875
PspPI	GGNCC	9 cut(s)	36, 117, 336, 672, 875, 876, 995, 1268, 1309
PspPPI	RGGWCCY	1 cut(s)	1309
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	3 cut(s)	364, 1093, 1231
PsyI	GACNNNGTC	1 cut(s)	710
PvuI	CGATCG	2 cut(s)	565, 955
RsaI	GTAC	4 cut(s)	68, 123, 509, 1149
RsaNI	GTAC	4 cut(s)	67, 122, 508, 1148
SacI	GAGCTC	2 cut(s)	9, 561
SaqAI	TTAA	4 cut(s)	458, 684, 1317, 1324
SatI	GCNGC	6 cut(s)	208, 281, 354, 643, 1001, 1077
Sau3AI	GATC	6 cut(s)	134, 364, 562, 952, 1093, 1231
Sau96I	GGNCC	9 cut(s)	36, 117, 336, 672, 875, 876, 995, 1268, 1309
SchI	GAGTC	2 cut(s)	226, 983
SduI	GDGCHC	5 cut(s)	9, 161, 303, 561, 879
SfaNI	GCATC	2 cut(s)	255, 1233
SfcI	CTRYAG	1 cut(s)	904
SinI	GGWCC	5 cut(s)	36, 117, 995, 1268, 1309
SmlI	CTYRAG	3 cut(s)	368, 419, 1263
SmoI	CTYRAG	3 cut(s)	368, 419, 1263
SnaBI	TACGTA	1 cut(s)	349
SphI	GCATGC	1 cut(s)	489
SseBI	AGGCCT	1 cut(s)	770
SsiI	CCGC	7 cut(s)	17, 162, 193, 207, 224, 590, 998
SspMI	CTAG	1 cut(s)	944
SstI	GAGCTC	2 cut(s)	9, 561
StuI	AGGCCT	1 cut(s)	770
TaaI	ACNGT	5 cut(s)	26, 712, 905, 1061, 1189
TaiI	ACGT	4 cut(s)	182, 351, 663, 1297
TaqI	TCGA	3 cut(s)	137, 561, 951
TatI	WGTACW	1 cut(s)	1147
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	4 cut(s)	46, 139, 401, 596
Tru1I	TTAA	4 cut(s)	458, 684, 1317, 1324
Tru9I	TTAA	4 cut(s)	458, 684, 1317, 1324
TscAI	CASTG	2 cut(s)	715, 1093
TseI	GCWGC	5 cut(s)	280, 353, 642, 1000, 1076
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	3 cut(s)	109, 779, 909
TspRI	CASTG	2 cut(s)	715, 1093
Tth111I	GACNNNGTC	1 cut(s)	710
VpaK11BI	GGWCC	5 cut(s)	36, 117, 995, 1268, 1309
XagI	CCTNNNNNAGG	1 cut(s)	1316
XceI	RCATGY	1 cut(s)	489
XspI	CTAG	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.