Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000313.1

Orthogroup ID

OG0008681

Physical Location & Seq

Genomic Coordinates Reverse (-)

24569 .. 25710

Gene Structure 1142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000313.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgttgacagctactgatgatgcagttcaactagtggttgatcggccatataaggcaggggaatctatttctgtttggtgtgggccacagcctaattcaaaattgcttataaattacggttttgttgacgaagataattcttatgaccgtttgatggttgaggcagctttgaatactgaggatccacaatatcaagataaaagaatggttgctcagagaaatggaaaattatcagtacaagcttttcaggtatatgtcgggaaggaaaaggaaactgtctcggatatgcttccctatctgcgactaggctatgtttcagatccttcggagatgcagtctgtcatctcttctcaaggtccaatttgtccagttagtccctgcatggaaagtgcagttttggaccaacttgctcaatattttagaagtcggctggctggctatccaactactctgattgaagatgagtctatgttggcggatcctaatttgaatccaaagaagcgagttgctacacagcttgttaggtcagaaaagaaaatactacatgcgtgcctgcaggtgactcttgattttataaatcagttacccgatctcagtgtaactccatgccctgccccttacgccccttcgttgagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00310 map00310

Pfam Domains

Protein Families

Rubis-subs-bind

Protein Analysis

212

Amino Acids

23.62

Weight (kDa)

4.87

Isoelectric Point (pI)

46.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14260 AT5G14260 AT5G14260 AT5G14260
fragaria_vesca	FvH4_6g52980 FvH4_6g52980
malus_domestica	MD09G1015500.v1.1 MD17G1015800.v1.1
prunus_persica	Prupe.3G302300_v2.0.a1
pyrus_communis	pycom111g01260
rosa_chinensis	RchiOBHm_Chr2g0174721
rosa_laevigata	RLG00000022290
rosa_multiflora	Rmu_co8074946.1_g000001 Rmu_sc0021138.1_g000001 Rmu_sc0021139.1_g000001 Rmu_ssc0000313.1_g000005
rosa_roxburghii	Rroxscaffold_2G00077790
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660300 Rh2BG671100 Rh2CG634400 Rh2DG684700
rosa_wichuraiana	Rw2G054090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	110, 575
AarI	CACCTGC	1 cut(s)	547
Acc36I	ACCTGC	1 cut(s)	547
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	5 cut(s)	176, 189, 314, 473, 486
AcoI	YGGCCR	1 cut(s)	44
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	29, 99, 172, 458, 490
AhlI	ACTAGT	1 cut(s)	31
AluBI	AGCT	4 cut(s)	11, 167, 242, 517
AluI	AGCT	4 cut(s)	11, 167, 242, 517
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	5 cut(s)	176, 189, 314, 473, 486
AlwNI	CAGNNNCTG	1 cut(s)	14
AoxI	GGCC	2 cut(s)	44, 83
ApeKI	GCWGC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	83, 356, 400
AsuHPI	GGTGA	1 cut(s)	571
AvaII	GGWCC	2 cut(s)	356, 400
BamHI	GGATCC	2 cut(s)	181, 478
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	283
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	2 cut(s)	32, 305
BfmI	CTRYAG	1 cut(s)	554
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme18I	GGWCC	2 cut(s)	356, 400
BmgT120I	GGNCC	3 cut(s)	83, 356, 400
BmiI	GGNNCC	2 cut(s)	183, 480
BmsI	GCATC	2 cut(s)	10, 321
BpuEI	CTTGAG	1 cut(s)	336
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	154
Bse1I	ACTGG	1 cut(s)	368
BseLI	CCNNNNNNNGG	1 cut(s)	154
BseMII	CTCAG	3 cut(s)	168, 227, 607
BseNI	ACTGG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	411
BshFI	GGCC	2 cut(s)	46, 85
BslFI	GGGAC	1 cut(s)	360
BslI	CCNNNNNNNGG	1 cut(s)	154
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	360
BsnI	GGCC	2 cut(s)	46, 85
Bsp143I	GATC	5 cut(s)	40, 181, 319, 478, 589
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	2 cut(s)	46, 85
BspCNI	CTCAG	3 cut(s)	169, 226, 606
BspLI	GGNNCC	2 cut(s)	183, 480
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	5 cut(s)	176, 189, 314, 473, 486
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	5 cut(s)	40, 181, 319, 478, 589
Bst4CI	ACNGT	3 cut(s)	119, 149, 277
Bst6I	CTCTTC	1 cut(s)	352
BstC8I	GCNNGC	4 cut(s)	432, 436, 550, 554
BstDEI	CTNAG	3 cut(s)	177, 213, 593
BstKTI	GATC	5 cut(s)	43, 184, 322, 481, 592
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	5 cut(s)	40, 181, 319, 478, 589
BstMWI	GCNNNNNNNGC	1 cut(s)	620
BstNSI	RCATGY	1 cut(s)	548
BstSFI	CTRYAG	1 cut(s)	554
BstV1I	GCAGC	1 cut(s)	176
BstX2I	RGATCY	3 cut(s)	181, 319, 478
BstYI	RGATCY	3 cut(s)	181, 319, 478
BsuRI	GGCC	2 cut(s)	46, 85
BtsIMutI	CAGTG	1 cut(s)	601
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	4 cut(s)	432, 436, 550, 554
CaiI	CAGNNNCTG	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	83, 356, 400
Csp6I	GTAC	1 cut(s)	236
CviAII	CATG	3 cut(s)	382, 545, 606
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	3 cut(s)	177, 213, 593
DpnI	GATC	5 cut(s)	42, 183, 321, 480, 591
DpnII	GATC	5 cut(s)	40, 181, 319, 478, 589
EaeI	YGGCCR	1 cut(s)	44
Eam1104I	CTCTTC	1 cut(s)	352
EarI	CTCTTC	1 cut(s)	352
EciI	GGCGGA	1 cut(s)	491
Eco47I	GGWCC	2 cut(s)	356, 400
FaeI	CATG	3 cut(s)	385, 548, 609
FaqI	GGGAC	1 cut(s)	360
FatI	CATG	3 cut(s)	381, 544, 605
Fnu4HI	GCNGC	1 cut(s)	165
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	32, 305
GluI	GCNGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	46, 85
Hin1II	CATG	3 cut(s)	385, 548, 609
HincII	GTYRAC	2 cut(s)	6, 127
HindII	GTYRAC	2 cut(s)	6, 127
HindIII	AAGCTT	1 cut(s)	240
HinfI	GANTC	4 cut(s)	62, 464, 490, 562
HphI	GGTGA	1 cut(s)	571
Hpy166II	GTNNAC	2 cut(s)	6, 127
Hpy188I	TCNGA	6 cut(s)	216, 283, 319, 328, 453, 529
Hpy188III	TCNNGA	3 cut(s)	194, 259, 566
Hpy8I	GTNNAC	2 cut(s)	6, 127
HpyAV	CCTTC	3 cut(s)	256, 333, 636
HpyCH4III	ACNGT	3 cut(s)	119, 149, 277
HpyCH4V	TGCA	5 cut(s)	23, 334, 381, 392, 556
HpyF10VI	GCNNNNNNNGC	1 cut(s)	620
HpyF3I	CTNAG	3 cut(s)	177, 213, 593
Hsp92II	CATG	3 cut(s)	385, 548, 609
Kzo9I	GATC	5 cut(s)	40, 181, 319, 478, 589
LpnPI	CCDG	9 cut(s)	42, 233, 381, 391, 416, 420, 542, 566, 624
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	2 cut(s)	10, 321
MaeI	CTAG	2 cut(s)	32, 305
MaeIII	GTNAC	3 cut(s)	559, 582, 598
MalI	GATC	5 cut(s)	42, 183, 321, 480, 591
MboI	GATC	5 cut(s)	40, 181, 319, 478, 589
MboII	GAAGA	3 cut(s)	143, 339, 470
MflI	RGATCY	3 cut(s)	181, 319, 478
MluCI	AATT	7 cut(s)	94, 101, 112, 136, 227, 360, 484
MlyI	GAGTC	2 cut(s)	473, 556
MmeI	TCCRAC	1 cut(s)	467
MnlI	CCTC	2 cut(s)	154, 172
MwoI	GCNNNNNNNGC	1 cut(s)	620
NdeII	GATC	5 cut(s)	40, 181, 319, 478, 589
NlaIII	CATG	3 cut(s)	385, 548, 609
NlaIV	GGNNCC	2 cut(s)	183, 480
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	548
PaqCI	CACCTGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	62, 490
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	2 cut(s)	472, 556
PpsI	GAGTC	2 cut(s)	472, 556
PsiI	TTATAA	2 cut(s)	110, 575
PspN4I	GGNNCC	2 cut(s)	183, 480
PspPI	GGNCC	3 cut(s)	83, 356, 400
PstI	CTGCAG	1 cut(s)	558
PstNI	CAGNNNCTG	1 cut(s)	14
PsuI	RGATCY	3 cut(s)	181, 319, 478
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	5 cut(s)	40, 181, 319, 478, 589
Sau96I	GGNCC	3 cut(s)	83, 356, 400
SbfI	CCTGCAGG	1 cut(s)	558
SchI	GAGTC	2 cut(s)	473, 556
SdaI	CCTGCAGG	1 cut(s)	558
SetI	ASST	8 cut(s)	13, 169, 244, 252, 358, 519, 527, 561
SfaNI	GCATC	2 cut(s)	10, 321
SfcI	CTRYAG	1 cut(s)	554
SinI	GGWCC	2 cut(s)	356, 400
SmlI	CTYRAG	1 cut(s)	351
SmoI	CTYRAG	1 cut(s)	351
SpeI	ACTAGT	1 cut(s)	31
Sse8387I	CCTGCAGG	1 cut(s)	558
Sse9I	AATT	7 cut(s)	94, 101, 112, 136, 227, 360, 484
SsiI	CCGC	1 cut(s)	476
SspI	AATATT	1 cut(s)	416
SspMI	CTAG	2 cut(s)	32, 305
TaaI	ACNGT	3 cut(s)	119, 149, 277
TasI	AATT	7 cut(s)	94, 101, 112, 136, 227, 360, 484
TatI	WGTACW	1 cut(s)	235
TfiI	GAWTC	2 cut(s)	62, 490
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	559
TspRI	CASTG	1 cut(s)	601
VpaK11BI	GGWCC	2 cut(s)	356, 400
XceI	RCATGY	1 cut(s)	548
XspI	CTAG	2 cut(s)	32, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.