Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Forward (+)

952623 .. 955837

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1015400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAAGCCATGCAATCTCTGGTGACGAACATCCAAGGGCTGTCGAGCTCCGGCGACATCTCGCACCTCCACGTCCTTCTGAAGCAAGCGCAGGAGTCGCTCTACGCCGAGTCGACTCGGTTGCTTCCCGTTCTCGACCAGCTCGACCCCGCCACGCACTCTCTCGGATACCTCTACATCCTGGAGGCATGCTCATCTGGTTCGATTTCAAAAGAGCAGGCGAGTGCGTTGGTCCTGCCCATTGCTAGATTTATCAACTCCTGTGTTGCGGAGCAGATTCGTTTGCAATCTGATAAATTCATATCTGTTTGCAAGAGGTTCAAAGATCATGTTATGCTTCTTGAAGCACCACTGCGGGGAGTGGCACCGATGCTGACAGCTATTCGGAAAATTCAGACCTCCTCAGAACATTTGACTTCTTTGCATCCAGAGTTTCTTCTGCTTTGTTTGTTGTCAAAATCCTATAAAGTTGGATATTCCGTTTTAGATGATGACATATTTGAGGTTGATCAGCCAAGGGATCTTTTTCTCTATTGCTATTACGGGGGGATGATATGCATCGGACAAAAGCGTTTTCGCAAAGCATTGGAGCTTCTTCACAATGTTGTAACATCACCAATGACTTCTTTTAATGCAATAGCTGTTGAAGCGTACAAAAAGCATATATTGGTTTCACTCATTCACAATTGGAATTTCTGCACCAGTCTCCCTAAATACACCTCCTCAGTATGTCAGAGGAATCTAAAAAACTATTGTCAGCCCTACATTGAATTGGCGCACTGCTATGTCAGCGGAAAAATTGTACATTTGGAGGCAATGGTTGACAGACACAAGGAAAAGTATGAAAATGACAACAATCTTGGACTGGTGAAGCAGGTATTATCTTCCCAGTATAAGCGAAACATTCAGAGACTGACTCAGACATACTTGACTCTTTCCCTTCAAGATATAGCCAACAGCGTTCAACTAAACAGCGCTAAGGAAGCAGAAATGCATGTGCTACAAATGATTGAAGATGGTCAAATATTCGCAACAATCAACCAGAAGGATGGAATGGTTAGATTTCTTGAGGATCCTGAGCAATATAAAACCTGTCACATGATTGAACACATTGACTCATCAATACAGAGGATAATGGCTCTGTCAAGGAAGCTGACTGCTATTGATGAAAACATCTCAACTGATCCTTTGTTCCTATCAAAGACTGGAAGAGAGCGGCAGAGATTTGACTTCGATGATTATGATGGCGTTCCTCAGAAGTTTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

424

Amino Acids

48.21

Weight (kDa)

6.57

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COP9_hel_rpt	PF22788	18 - 243	5.4e-63	COP9 signalosome complex subunit 3, N-terminal helical repeats
PCI	PF01399	277 - 355	9.1e-15	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
AccB1I	GGYRCC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	1216
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	5 cut(s)	150, 269, 355, 792, 1216
AclWI	GGATC	4 cut(s)	528, 1067, 1080, 1178
AcsI	RAATTY	3 cut(s)	296, 390, 691
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	653, 804
AfeI	AGCGCT	1 cut(s)	976
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	9 cut(s)	210, 322, 344, 647, 770, 944, 965, 1013, 1106
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	6 cut(s)	48, 142, 380, 592, 641, 1153
AluI	AGCT	6 cut(s)	48, 142, 380, 592, 641, 1153
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	710, 904
AlwI	GGATC	4 cut(s)	528, 1067, 1080, 1178
AlwNI	CAGNNNCTG	1 cut(s)	913
Aor51HI	AGCGCT	1 cut(s)	976
ApoI	RAATTY	3 cut(s)	296, 390, 691
AspLEI	GCGC	3 cut(s)	91, 778, 977
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	34, 606, 880
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	1072
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	50
BccI	CCATC	3 cut(s)	1010, 1043, 1238
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	710, 904
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	978
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	1217
BlsI	GCNGC	1 cut(s)	1218
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	366, 1074
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	3 cut(s)	360, 433, 567
BmuI	ACTGGG	1 cut(s)	883
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 901, 933
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	2 cut(s)	978, 1077
BpuEI	CTTGAG	1 cut(s)	1088
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	2 cut(s)	34, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	4 cut(s)	702, 870, 889, 1210
Bse3DI	GCAATG	2 cut(s)	240, 822
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	34, 515
BseGI	GGATG	5 cut(s)	30, 177, 424, 555, 1054
BseJI	GATNNNNATC	1 cut(s)	557
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	2 cut(s)	240, 822
BseMII	CTCAG	5 cut(s)	417, 738, 932, 1068, 1268
BseNI	ACTGG	4 cut(s)	702, 870, 889, 1210
BseRI	GAGGAG	2 cut(s)	391, 712
BsgI	GTGCAG	1 cut(s)	682
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	710, 904
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	802
Bsp143I	GATC	5 cut(s)	325, 508, 520, 1072, 1183
BspACI	CCGC	5 cut(s)	150, 269, 355, 792, 1216
BspCNI	CTCAG	5 cut(s)	416, 737, 931, 1069, 1267
BspLI	GGNNCC	2 cut(s)	366, 1074
BspMI	ACCTGC	1 cut(s)	865
BspPI	GGATC	4 cut(s)	528, 1067, 1080, 1178
BspT107I	GGYRCC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	1216
BsrDI	GCAATG	2 cut(s)	240, 822
BsrGI	TGTACA	1 cut(s)	802
BsrI	ACTGG	4 cut(s)	702, 870, 889, 1210
BssECI	CCNNGG	2 cut(s)	34, 515
BssMI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
BssT1I	CCWWGG	2 cut(s)	34, 515
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	1204
BstAUI	TGTACA	1 cut(s)	802
BstC8I	GCNNGC	3 cut(s)	87, 190, 219
BstDEI	CTNAG	6 cut(s)	403, 724, 918, 978, 1077, 1254
BstF5I	GGATG	5 cut(s)	30, 177, 424, 555, 1054
BstH2I	RGCGCY	1 cut(s)	978
BstHHI	GCGC	3 cut(s)	91, 778, 977
BstKTI	GATC	5 cut(s)	328, 511, 523, 1075, 1186
BstMAI	GTCTC	2 cut(s)	710, 904
BstMBI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 647, 789, 983
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	2 cut(s)	192, 998
BstSCI	CCNGG	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	520, 1072
BstXI	CCANNNNNNTGG	1 cut(s)	1049
BstYI	RGATCY	2 cut(s)	520, 1072
BsuI	GTATCC	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	5 cut(s)	30, 177, 424, 555, 1054
BtsI	GCAGTG	2 cut(s)	350, 778
BtsIMutI	CAGTG	2 cut(s)	350, 778
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	3 cut(s)	87, 190, 219
CaiI	CAGNNNCTG	1 cut(s)	913
CfoI	GCGC	3 cut(s)	91, 778, 977
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	652, 803
CviAII	CATG	5 cut(s)	10, 189, 329, 995, 1099
CviQI	GTAC	2 cut(s)	652, 803
DdeI	CTNAG	6 cut(s)	403, 724, 918, 978, 1077, 1254
DpnI	GATC	5 cut(s)	327, 510, 522, 1074, 1185
DpnII	GATC	5 cut(s)	325, 508, 520, 1072, 1183
Eam1104I	CTCTTC	1 cut(s)	1204
EarI	CTCTTC	1 cut(s)	1204
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	34, 515
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	976
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	34, 515
EcoT22I	ATGCAT	2 cut(s)	560, 996
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	34, 515
FaeI	CATG	5 cut(s)	13, 192, 332, 998, 1102
FatI	CATG	5 cut(s)	9, 188, 328, 994, 1098
FauI	CCCGC	2 cut(s)	157, 348
FauNDI	CATATG	1 cut(s)	1268
FbaI	TGATCA	1 cut(s)	508
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	1217
FokI	GGATG	5 cut(s)	17, 164, 411, 562, 1061
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	1217
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	3 cut(s)	90, 777, 976
GluI	GCNGC	1 cut(s)	1217
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	978
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	3 cut(s)	91, 778, 977
Hin1II	CATG	5 cut(s)	13, 192, 332, 998, 1102
Hin6I	GCGC	3 cut(s)	89, 776, 975
HinP1I	GCGC	3 cut(s)	89, 776, 975
HincII	GTYRAC	2 cut(s)	114, 823
HindII	GTYRAC	2 cut(s)	114, 823
HinfI	GANTC	8 cut(s)	95, 110, 115, 277, 739, 916, 931, 1115
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	34, 606, 880
Hpy166II	GTNNAC	2 cut(s)	114, 823
Hpy188III	TCNNGA	6 cut(s)	134, 341, 428, 944, 1067, 1076
Hpy8I	GTNNAC	2 cut(s)	114, 823
HpyAV	CCTTC	3 cut(s)	86, 950, 1039
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	8 cut(s)	13, 286, 312, 424, 558, 635, 699, 994
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 647, 789, 983
HpyF3I	CTNAG	6 cut(s)	403, 724, 918, 978, 1077, 1254
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	13, 192, 332, 998, 1102
HspAI	GCGC	3 cut(s)	89, 776, 975
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	5 cut(s)	325, 508, 520, 1072, 1183
LmnI	GCTCC	3 cut(s)	53, 271, 589
LweI	GCATC	3 cut(s)	360, 433, 567
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	22, 607, 1094
MalI	GATC	5 cut(s)	327, 510, 522, 1074, 1185
MbiI	CCGCTC	1 cut(s)	1216
MboI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
MboII	GAAGA	5 cut(s)	428, 587, 876, 1025, 1221
MfeI	CAATTG	1 cut(s)	685
MflI	RGATCY	2 cut(s)	520, 1072
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	6 cut(s)	296, 390, 685, 691, 770, 798
MlyI	GAGTC	6 cut(s)	104, 109, 119, 910, 925, 1109
MmeI	TCCRAC	1 cut(s)	451
Mph1103I	ATGCAT	2 cut(s)	560, 996
MseI	TTAA	2 cut(s)	630, 1263
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	792
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	685
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	97, 647, 789, 983
NdeI	CATATG	1 cut(s)	1268
NdeII	GATC	5 cut(s)	325, 508, 520, 1072, 1183
NlaIII	CATG	5 cut(s)	13, 192, 332, 998, 1102
NlaIV	GGNNCC	2 cut(s)	366, 1074
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	22, 1094
NsiI	ATGCAT	2 cut(s)	560, 996
NspI	RCATGY	2 cut(s)	192, 998
PaeI	GCATGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	277, 739
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	1218
PleI	GAGTC	6 cut(s)	103, 109, 118, 910, 925, 1109
PpsI	GAGTC	6 cut(s)	103, 109, 118, 910, 925, 1109
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	366, 1074
PspPI	GGNCC	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	2 cut(s)	520, 1072
RsaI	GTAC	2 cut(s)	653, 804
RsaNI	GTAC	2 cut(s)	652, 803
RseI	CAYNNNNRTG	1 cut(s)	783
SacI	GAGCTC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	630, 1263
SatI	GCNGC	1 cut(s)	1217
Sau3AI	GATC	5 cut(s)	325, 508, 520, 1072, 1183
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	6 cut(s)	104, 109, 119, 910, 925, 1109
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	360, 433, 567
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	6 cut(s)	296, 390, 685, 691, 770, 798
SsiI	CCGC	5 cut(s)	150, 269, 355, 792, 1216
SspI	AATATT	1 cut(s)	1026
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	2 cut(s)	34, 515
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	6 cut(s)	44, 113, 135, 144, 203, 1233
TasI	AATT	6 cut(s)	296, 390, 685, 691, 770, 798
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	1 cut(s)	1219
TfiI	GAWTC	2 cut(s)	277, 739
Tru1I	TTAA	2 cut(s)	630, 1263
Tru9I	TTAA	2 cut(s)	630, 1263
TscAI	CASTG	2 cut(s)	357, 785
TseFI	GTSAC	2 cut(s)	22, 1094
Tsp45I	GTSAC	2 cut(s)	22, 1094
TspDTI	ATGAA	3 cut(s)	289, 858, 1182
TspGWI	ACGGA	1 cut(s)	469
TspRI	CASTG	2 cut(s)	357, 785
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	3 cut(s)	296, 390, 691
XceI	RCATGY	2 cut(s)	192, 998
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	246
Zsp2I	ATGCAT	2 cut(s)	560, 996

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.