Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Forward (+)

803235 .. 806041

Gene Structure 2807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g01250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGAAGCCATACAATCTCTGGTGACGAATATCCAAGGGCTGTCGAGCTCCGGCGACATCTCCCACCTCCACGTCCTTCTGAAGCAAGCGCAGGAGTCGCTCTACGCCGAGTCGACTCGGTTGCTTCCCGTTCTCGACCAGCTCGACCCCGCCACGCACTCTCTCGGATACCTCTACATCCTGGAGGCATGCTCATCTGGTTCGATTTCAAAAGAGCAGGCGAGTGCGTTGGTCCTGCCCATTGCTAGATTTATCAATTCCTGTGTCACGGAGCAGATTCGTTTGCAACCTGATAAATTCATATCTGTTTGCAAGAGGTTCAAAGATCATGTTATGCTTCTTGAAGCACCACTGCGGGGAGTGGCACCGATGCTGACGGCTATTCGGAAAATTCAGACCTCCTCAGAACATTTGACTTCTTTGCATCCAGAGTTTCTTCTGCTTTGTTTGTTGTCAAAATCCTATAAAGTTGGATATTCCGTTTTAGATGATGACATATTTGAGGTTGATCCTGAGCCAAGGGATCTTTTTCTCTATTGCTATTACGGGGGGATGATATGCATCGGACAAAAGCGTTTTCGCAAAGCATTGGAGCTTCTTCACAATGTTGTAACATCACCAATGACTTCTTTTAATGCAATAGCTGTTGAAGCGTACAAAAAGCATATATTGGCTTCACTCATTCACAATTGGAATTTCTGCACCAGTCTCCCTAAATACACCTCCTCAGTATGTCAGAGGAATCTAAAAAATTATTGTCAGCCCTACATTGAATTGGCACATTGCTATGTCAGCGGAAAAATTGTACATTTGGAGGCAATGGTTGACAGACACAGGGAAAAGTATGAAAATGACAACAATCTTGGACTGGTGAAGCAGGTATTATCTTCCCAGTATAAGCGAAACATTCAGAGACTGACTCAGACATACTTGACTCTTTCCCTTCAAGATATAGCCAACAGCGTTCAACTAAACAGCGCTAAGGAAGCAGAAATGCATGTGCTACAAATGATTGAAGATGGTCAGATATTTGCAACAATCAACCAAAAGGATGGAATGGTTAGATTTCTTGAGGATCCTGAGCAATATAAAACCTGTCACATGATTGAACACATTGACTCATCAATACAGAGGATAATGGCTCTCTCAAGGAAGCTGACCGCTATTGATGAAAACATCTCAACTGATCCTTTGTTCCTATCAAAGACTGGAAGAGAGCGGCAGAGATTTGACTTCGATGATTATGATAGCGTTCCTCAGAAGTTTAACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

425

Amino Acids

48.36

Weight (kDa)

6.43

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	868
AccB1I	GGYRCC	1 cut(s)	364
AccBSI	CCGCTC	1 cut(s)	1219
AccI	GTMKAC	1 cut(s)	113
AciI	CCGC	5 cut(s)	150, 355, 795, 1161, 1219
AclWI	GGATC	5 cut(s)	503, 531, 1070, 1083, 1181
AcsI	RAATTY	3 cut(s)	296, 390, 694
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	2 cut(s)	656, 807
AfeI	AGCGCT	1 cut(s)	979
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	9 cut(s)	210, 322, 344, 650, 773, 947, 968, 1016, 1109
AjiI	CACGTC	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	5 cut(s)	48, 142, 595, 644, 1156
AluI	AGCT	5 cut(s)	48, 142, 595, 644, 1156
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	713, 907
AlwI	GGATC	5 cut(s)	503, 531, 1070, 1083, 1181
AlwNI	CAGNNNCTG	1 cut(s)	916
Aor51HI	AGCGCT	1 cut(s)	979
ApoI	RAATTY	3 cut(s)	296, 390, 694
AspLEI	GCGC	2 cut(s)	91, 980
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	34, 609, 883
AvaII	GGWCC	1 cut(s)	232
BamHI	GGATCC	1 cut(s)	1075
BanI	GGYRCC	1 cut(s)	364
BanII	GRGCYC	1 cut(s)	50
Bbv12I	GWGCWC	1 cut(s)	50
BccI	CCATC	2 cut(s)	1013, 1046
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BciT130I	CCWGG	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	713, 907
BfaI	CTAG	1 cut(s)	246
BfoI	RGCGCY	1 cut(s)	981
BfuAI	ACCTGC	1 cut(s)	868
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	1220
BlsI	GCNGC	1 cut(s)	1221
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	366, 1077
BmrFI	CCNGG	1 cut(s)	182
BmrI	ACTGGG	1 cut(s)	886
BmsI	GCATC	3 cut(s)	360, 433, 570
BmuI	ACTGGG	1 cut(s)	886
BplI	GAGNNNNNCTC	4 cut(s)	176, 208, 904, 936
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	3 cut(s)	513, 981, 1080
BpuEI	CTTGAG	2 cut(s)	1091, 1132
BsaBI	GATNNNNATC	1 cut(s)	560
BsaJI	CCNNGG	2 cut(s)	34, 518
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	4 cut(s)	705, 873, 892, 1213
Bse3DI	GCAATG	3 cut(s)	240, 781, 825
Bse8I	GATNNNNATC	1 cut(s)	560
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	2 cut(s)	34, 518
BseGI	GGATG	4 cut(s)	177, 424, 558, 1057
BseJI	GATNNNNATC	1 cut(s)	560
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	3 cut(s)	240, 781, 825
BseMII	CTCAG	6 cut(s)	417, 504, 741, 935, 1071, 1271
BseNI	ACTGG	4 cut(s)	705, 873, 892, 1213
BseRI	GAGGAG	2 cut(s)	391, 715
BsgI	GTGCAG	1 cut(s)	685
BshNI	GGYRCC	1 cut(s)	364
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	51
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	2 cut(s)	713, 907
Bsp1286I	GDGCHC	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	805
Bsp143I	GATC	5 cut(s)	325, 508, 523, 1075, 1186
BspACI	CCGC	5 cut(s)	150, 355, 795, 1161, 1219
BspCNI	CTCAG	6 cut(s)	416, 505, 740, 934, 1072, 1270
BspLI	GGNNCC	2 cut(s)	366, 1077
BspMI	ACCTGC	1 cut(s)	868
BspPI	GGATC	5 cut(s)	503, 531, 1070, 1083, 1181
BspT107I	GGYRCC	1 cut(s)	364
BsrBI	CCGCTC	1 cut(s)	1219
BsrDI	GCAATG	3 cut(s)	240, 781, 825
BsrGI	TGTACA	1 cut(s)	805
BsrI	ACTGG	4 cut(s)	705, 873, 892, 1213
BssECI	CCNNGG	2 cut(s)	34, 518
BssMI	GATC	5 cut(s)	325, 508, 523, 1075, 1186
BssT1I	CCWWGG	2 cut(s)	34, 518
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	1 cut(s)	1207
BstAUI	TGTACA	1 cut(s)	805
BstC8I	GCNNGC	3 cut(s)	87, 190, 219
BstDEI	CTNAG	7 cut(s)	403, 513, 727, 921, 981, 1080, 1257
BstF5I	GGATG	4 cut(s)	177, 424, 558, 1057
BstH2I	RGCGCY	1 cut(s)	981
BstHHI	GCGC	2 cut(s)	91, 980
BstKTI	GATC	5 cut(s)	328, 511, 526, 1078, 1189
BstMAI	GTCTC	2 cut(s)	713, 907
BstMBI	GATC	5 cut(s)	325, 508, 523, 1075, 1186
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 650, 792, 986
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	2 cut(s)	192, 1001
BstSCI	CCNGG	1 cut(s)	180
BstX2I	RGATCY	2 cut(s)	523, 1075
BstXI	CCANNNNNNTGG	1 cut(s)	1052
BstYI	RGATCY	2 cut(s)	523, 1075
BsuI	GTATCC	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	73
BtsCI	GGATG	4 cut(s)	177, 424, 558, 1057
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	1 cut(s)	350
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	3 cut(s)	87, 190, 219
CaiI	CAGNNNCTG	1 cut(s)	916
CfoI	GCGC	2 cut(s)	91, 980
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	2 cut(s)	655, 806
CviAII	CATG	4 cut(s)	189, 329, 998, 1102
CviQI	GTAC	2 cut(s)	655, 806
DdeI	CTNAG	7 cut(s)	403, 513, 727, 921, 981, 1080, 1257
DpnI	GATC	5 cut(s)	327, 510, 525, 1077, 1188
DpnII	GATC	5 cut(s)	325, 508, 523, 1075, 1186
Eam1104I	CTCTTC	1 cut(s)	1207
EarI	CTCTTC	1 cut(s)	1207
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	34, 518
Eco24I	GRGCYC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	232
Eco47III	AGCGCT	1 cut(s)	979
Eco53kI	GAGCTC	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	34, 518
EcoT22I	ATGCAT	2 cut(s)	563, 999
EcoT38I	GRGCYC	1 cut(s)	50
ErhI	CCWWGG	2 cut(s)	34, 518
FaeI	CATG	4 cut(s)	192, 332, 1001, 1105
FatI	CATG	4 cut(s)	188, 328, 997, 1101
FauI	CCCGC	2 cut(s)	157, 348
FauNDI	CATATG	1 cut(s)	1271
FblI	GTMKAC	1 cut(s)	113
Fnu4HI	GCNGC	1 cut(s)	1220
FokI	GGATG	4 cut(s)	164, 411, 565, 1064
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	1 cut(s)	1220
FspBI	CTAG	1 cut(s)	246
GlaI	GCGC	2 cut(s)	90, 979
GluI	GCNGC	1 cut(s)	1220
GsuI	CTGGAG	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	981
HapII	CCGG	1 cut(s)	51
HhaI	GCGC	2 cut(s)	91, 980
Hin1II	CATG	4 cut(s)	192, 332, 1001, 1105
Hin6I	GCGC	2 cut(s)	89, 978
HinP1I	GCGC	2 cut(s)	89, 978
HincII	GTYRAC	2 cut(s)	114, 826
HindII	GTYRAC	2 cut(s)	114, 826
HinfI	GANTC	8 cut(s)	95, 110, 115, 277, 742, 919, 934, 1118
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	3 cut(s)	34, 609, 883
Hpy166II	GTNNAC	2 cut(s)	114, 826
Hpy188III	TCNNGA	7 cut(s)	134, 341, 428, 512, 947, 1070, 1079
Hpy8I	GTNNAC	2 cut(s)	114, 826
HpyAV	CCTTC	2 cut(s)	86, 953
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	8 cut(s)	286, 312, 424, 561, 638, 702, 997, 1034
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 650, 792, 986
HpyF3I	CTNAG	7 cut(s)	403, 513, 727, 921, 981, 1080, 1257
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	192, 332, 1001, 1105
HspAI	GCGC	2 cut(s)	89, 978
Kzo9I	GATC	5 cut(s)	325, 508, 523, 1075, 1186
LmnI	GCTCC	3 cut(s)	53, 271, 592
LweI	GCATC	3 cut(s)	360, 433, 570
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	4 cut(s)	22, 265, 610, 1097
MalI	GATC	5 cut(s)	327, 510, 525, 1077, 1188
MbiI	CCGCTC	1 cut(s)	1219
MboI	GATC	5 cut(s)	325, 508, 523, 1075, 1186
MboII	GAAGA	5 cut(s)	428, 590, 879, 1028, 1224
MfeI	CAATTG	1 cut(s)	688
MflI	RGATCY	2 cut(s)	523, 1075
MhlI	GDGCHC	1 cut(s)	50
MluCI	AATT	8 cut(s)	256, 296, 390, 688, 694, 751, 773, 801
MlyI	GAGTC	6 cut(s)	104, 109, 119, 913, 928, 1112
MmeI	TCCRAC	1 cut(s)	451
Mph1103I	ATGCAT	2 cut(s)	563, 999
MseI	TTAA	2 cut(s)	633, 1266
MslI	CAYNNNNRTG	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	795
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	688
MvaI	CCWGG	1 cut(s)	182
MwoI	GCNNNNNNNGC	4 cut(s)	97, 650, 792, 986
NdeI	CATATG	1 cut(s)	1271
NdeII	GATC	5 cut(s)	325, 508, 523, 1075, 1186
NlaIII	CATG	4 cut(s)	192, 332, 1001, 1105
NlaIV	GGNNCC	2 cut(s)	366, 1077
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	3 cut(s)	22, 265, 1097
NsiI	ATGCAT	2 cut(s)	563, 999
NspI	RCATGY	2 cut(s)	192, 1001
PaeI	GCATGC	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	2 cut(s)	277, 742
PfoI	TCCNGGA	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	1221
PleI	GAGTC	6 cut(s)	103, 109, 118, 913, 928, 1112
PpsI	GAGTC	6 cut(s)	103, 109, 118, 913, 928, 1112
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	366, 1077
PspPI	GGNCC	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	916
PsuI	RGATCY	2 cut(s)	523, 1075
RsaI	GTAC	2 cut(s)	656, 807
RsaNI	GTAC	2 cut(s)	655, 806
RseI	CAYNNNNRTG	1 cut(s)	786
SacI	GAGCTC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	633, 1266
SatI	GCNGC	1 cut(s)	1220
Sau3AI	GATC	5 cut(s)	325, 508, 523, 1075, 1186
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	6 cut(s)	104, 109, 119, 913, 928, 1112
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	50
SfaNI	GCATC	3 cut(s)	360, 433, 570
SinI	GGWCC	1 cut(s)	232
SmiMI	CAYNNNNRTG	1 cut(s)	786
SmlI	CTYRAG	2 cut(s)	1070, 1147
SmoI	CTYRAG	2 cut(s)	1070, 1147
SphI	GCATGC	1 cut(s)	192
Sse9I	AATT	8 cut(s)	256, 296, 390, 688, 694, 751, 773, 801
SsiI	CCGC	5 cut(s)	150, 355, 795, 1161, 1219
SspMI	CTAG	1 cut(s)	246
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	2 cut(s)	34, 518
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	6 cut(s)	44, 113, 135, 144, 203, 1236
TasI	AATT	8 cut(s)	256, 296, 390, 688, 694, 751, 773, 801
TatI	WGTACW	1 cut(s)	805
TauI	GCSGC	1 cut(s)	1222
TfiI	GAWTC	2 cut(s)	277, 742
Tru1I	TTAA	2 cut(s)	633, 1266
Tru9I	TTAA	2 cut(s)	633, 1266
TscAI	CASTG	1 cut(s)	357
TseFI	GTSAC	3 cut(s)	22, 265, 1097
Tsp45I	GTSAC	3 cut(s)	22, 265, 1097
TspDTI	ATGAA	3 cut(s)	289, 861, 1185
TspGWI	ACGGA	2 cut(s)	284, 469
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	3 cut(s)	296, 390, 694
XceI	RCATGY	2 cut(s)	192, 1001
XcmI	CCANNNNNNNNNTGG	1 cut(s)	16
XmiI	GTMKAC	1 cut(s)	113
XspI	CTAG	1 cut(s)	246
Zsp2I	ATGCAT	2 cut(s)	563, 999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.