Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011229

Physical Location & Seq

Genomic Coordinates Forward (+)

19190865 .. 19191552

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g21030.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGTATTGTTCAAACTTGCAGTTCTGTACTAGTCTCCCTAAATACAACTCCTCAGTATGTCAGAGGAATCTAAAGAACTATTGTCACCCCTACATTGAATTGGCGCACTGCTATGTCAACGAAAAAATTGTGCATTTGGAGGCAATGGTTGATAGACACAGGAAAAAGTATGACAATGTGAGTTCTTATTATGTTTTCATCCCGTTGTTTTTCCTTTATTCGTATGTCGTATCCATGGTGTCAAAGGAAAAGTGGATGCAACATGATTTCTCTGTAACCTACGATTCTCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000338 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007346 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010389 GO:0010564 GO:0010971 GO:0019538 GO:0019941 GO:0030163 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045787 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0065007 GO:0070646 GO:0070647 GO:0071704 GO:0090068 GO:1901564 GO:1901565 GO:1901575 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902749 GO:1902751

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

99

Amino Acids

11.8

Weight (kDa)

8.25

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0011229)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14250 AT5G14250
fragaria_vesca	FvH4_6g52990 FvH4_6g52990
malus_domestica	MD09G1015400.v1.1 MD17G1015500.v1.1
prunus_persica	Prupe.3G302400_v2.0.a1
pyrus_communis	pycom111g01250 pycom16g21030 pycom17g01270
rosa_chinensis	RchiOBHm_Chr2g0174731
rosa_laevigata	RLG00000022291
rosa_multiflora	Rmu_ssc0000313.1_g000004
rosa_roxburghii	Rroxscaffold_2G00077780
rosa_rugosa	Rorug02G0579100
rosa_samantha	Rh2AG660400 Rh2BG671200 Rh2CG634500 Rh2DG684800
rosa_wichuraiana	Rw2G054100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	2 cut(s)	12, 98
AhlI	ACTAGT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	38
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	241
BmsI	GCATC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	198, 261
BseMI	GCAATG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	38
Bsp19I	CCATGG	1 cut(s)	234
BspCNI	CTCAG	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	234
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	2 cut(s)	198, 261
BstHHI	GCGC	1 cut(s)	106
BstMAI	GTCTC	1 cut(s)	38
BsuI	GTATCC	1 cut(s)	241
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	198, 261
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	106
CfoI	GCGC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	2 cut(s)	235, 263
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	234
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	2 cut(s)	238, 266
FaiI	YATR	7 cut(s)	58, 114, 171, 192, 225, 236, 264
FatI	CATG	2 cut(s)	234, 262
FokI	GGATG	2 cut(s)	185, 268
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	238, 266
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	67, 284
HphI	GGTGA	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	2 cut(s)	63, 291
Hpy8I	GTNNAC	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	19, 133, 259
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	238, 266
HspAI	GCGC	1 cut(s)	104
LpnPI	CCDG	1 cut(s)	145
LweI	GCATC	1 cut(s)	246
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	83, 274
MluCI	AATT	2 cut(s)	98, 126
MnlI	CCTC	3 cut(s)	57, 61, 133
MslI	CAYNNNNRTG	1 cut(s)	111
NcoI	CCATGG	1 cut(s)	234
NlaIII	CATG	2 cut(s)	238, 266
NmuCI	GTSAC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	67, 284
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
RseI	CAYNNNNRTG	1 cut(s)	111
SetI	ASST	1 cut(s)	281
SfaNI	GCATC	1 cut(s)	246
SgeI	CNNG	6 cut(s)	28, 42, 172, 214, 247, 275
SmiMI	CAYNNNNRTG	1 cut(s)	111
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	2 cut(s)	98, 126
SspMI	CTAG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	234
TasI	AATT	2 cut(s)	98, 126
TatI	WGTACW	1 cut(s)	26
TfiI	GAWTC	2 cut(s)	67, 284
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	113
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.